mRNA_C-linearis_contig80.15866.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15866.1
Unique NamemRNA_C-linearis_contig80.15866.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15866.1 vs. uniprot
Match: D7FS07_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS07_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 5.430e-91
Identity = 219/431 (50.81%), Postives = 247/431 (57.31%), Query Frame = 1 
Query:    1 MNLVYGSFCPLHEGNDRCPCRTLTTNASIWTAAELGDAERVKMVVRVKGRSPDSLDPHGYTPLHLAAQNGRLAVVQYLLEAGASPDGVPADAGGCGAXXXXXXXXXXXXXXXXXXXXXXXKHSAADISFLDMKTPLQKAAGQGHRDTCIALMEAGADPNTRDAAGNCALDVLDLSSPALSDVALLSAPQTNGGGGGTEACS----STVVLSRGGKQDWSGVREALERYGGCRNLREANGARDNDGDGRSYDGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASASIEAIETDAGFGVDVEGSE-EALAGPASCCTQARGAPSEVDAIAAPAPVSSKGQ-----------------VADTPRSGHGSRSAGIPCGECLLPKMVMVRASCCGGLLCKPCVREICARRCSCRRCRDSG 1227
            MNLV+GSFCPLHEGNDRCPCRTLTTNASIWTAAELGD  RV++ V VKGR PDSLDPHGY PLHLAAQNGRL+VV YLLEAGASPDGVPADAGGCGA XXXXXXXXXXXXXXXXXXXXXX  +AAD SF DM+T                            AAGN ALDVL LS P L +     +P + G  G          S VVLS G   +W GVREALER+GG R +R    AR  +G G +  GG G                                          +  S E +   AG  + V   E  AL G  + C++ R   S VDA A  A   S+GQ                 V  +PRSG G    G+PCGECLLPK+VMVR +CCGGL+CKPC R++CARR SCRRCR  G
Sbjct:    1 MNLVFGSFCPLHEGNDRCPCRTLTTNASIWTAAELGDVARVRVSVGVKGRRPDSLDPHGYCPLHLAAQNGRLSVVLYLLEAGASPDGVPADAGGCGATXXXXXXXXXXXXXXXXXXXXXXXTNAADTSFADMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNSALDVLCLSVPILPEAMPARSPHSEGSSGAXXXXXXXXCSIVVLSSGAGNNWGGVREALERHGGLRRMR----ARV-EGLGNAGSGGGGDHQGEAGSGCIDPGARSSECEKESA-----------------SVLSAEPVVQTAGAELGVREPEVAALPGQETSCSKKR---SGVDA-AELASTPSQGQLGAVSVAGTERVVLERAVGKSPRSG-GXXXXGVPCGECLLPKVVMVRTTCCGGLICKPCARDVCARRQSCRRCRYRG 404
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BLAST of mRNA_C-linearis_contig80.15866.1 vs. uniprot
Match: D7FTM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 5.010e-5
Identity = 42/142 (29.58%), Postives = 64/142 (45.07%), Query Frame = 1 
Query:   82 SIWTAAELGDAERVKMVVRVKGRSPDSLDPH-GYTPLHLAAQNGRLAVVQYLLEAGASPDGVPADAGGCGAXXXXXXXXXXXXXXXXXXXXXXXKHSAADISFLDMKTPLQKAAGQGHRDTCIALMEAGADPNTRDAAGNCA 504
            S+W+AA+ G+ +R+  ++ +   + D+ DP  G+T LH A++ G+LA V+ L+E  A   G  A  G                                       +TPL  AAG G  + C AL++AGAD   RD+ G  A
Sbjct:   19 SVWSAAKSGEDKRLSYMLSLPRANVDARDPDSGWTALHFASRQGKLATVRVLIENQAFV-GARAPGG---------------------------------------RTPLHLAAGWGTYEVCFALLQAGADKTARDSKGETA 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS07_ECTSI5.430e-9150.81Chain A, Crystal Structure Of A Designed Full Cons... [more]
D7FTM3_ECTSI5.010e-529.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:322015..324531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue9.9e-76
Seed eggNOG ortholog2880.D7FS07
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-12_006950.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons4
Model size1236
Cds size1236
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15866.1prot_C-linearis_contig80.15866.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 322015..324531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.9831216-CDS-C-linearis_contig80:322014..3220761622930585.9831216-CDS-C-linearis_contig80:322014..322076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322015..322076 +
1690881146.4010673-CDS-C-linearis_contig80:322014..3220761690881146.4010673-CDS-C-linearis_contig80:322014..322076Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322015..322076 +
1622930586.0003483-CDS-C-linearis_contig80:322518..3226611622930586.0003483-CDS-C-linearis_contig80:322518..322661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322519..322661 +
1690881146.412266-CDS-C-linearis_contig80:322518..3226611690881146.412266-CDS-C-linearis_contig80:322518..322661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322519..322661 +
1622930586.0155811-CDS-C-linearis_contig80:322966..3230661622930586.0155811-CDS-C-linearis_contig80:322966..323066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322967..323066 +
1690881146.4219015-CDS-C-linearis_contig80:322966..3230661690881146.4219015-CDS-C-linearis_contig80:322966..323066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 322967..323066 +
1622930586.0392358-CDS-C-linearis_contig80:323600..3245311622930586.0392358-CDS-C-linearis_contig80:323600..324531Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 323601..324531 +
1690881146.4325821-CDS-C-linearis_contig80:323600..3245311690881146.4325821-CDS-C-linearis_contig80:323600..324531Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 323601..324531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15866.1

>prot_C-linearis_contig80.15866.1 ID=prot_C-linearis_contig80.15866.1|Name=mRNA_C-linearis_contig80.15866.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=412bp
MNLVYGSFCPLHEGNDRCPCRTLTTNASIWTAAELGDAERVKMVVRVKGR
SPDSLDPHGYTPLHLAAQNGRLAVVQYLLEAGASPDGVPADAGGCGATPL
HRAAFAGQLPCVQALLAAGAKHSAADISFLDMKTPLQKAAGQGHRDTCIA
LMEAGADPNTRDAAGNCALDVLDLSSPALSDVALLSAPQTNGGGGGTEAC
SSTVVLSRGGKQDWSGVREALERYGGCRNLREANGARDNDGDGRSYDGGD
GGGVSSASRNRGASGGALAGAGPEQESTTVPPPPPPPPPPPPIASASIEA
IETDAGFGVDVEGSEEALAGPASCCTQARGAPSEVDAIAAPAPVSSKGQV
ADTPRSGHGSRSAGIPCGECLLPKMVMVRASCCGGLLCKPCVREICARRC
SCRRCRDSGGA*
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mRNA from alignment at C-linearis_contig80:322015..324531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15866.1 ID=mRNA_C-linearis_contig80.15866.1|Name=mRNA_C-linearis_contig80.15866.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2517bp|location=Sequence derived from alignment at C-linearis_contig80:322015..324531+ (Chordaria linearis ClinC8C monoicous)
ATGAATCTCGTGTACGGTTCTTTCTGCCCCCTGCACGAGGGAAACGATCG
ATGCCCGTGCCGGTGAGAAACCTTTTCTTGTGCTCAAGAAATGCGAACAT
GTAGCATATCATTTGATGGTAGGAAGGTACCTTGGTACCTCTGTACCACG
GAGACCGCTTGTCCGCCGCGTGCGCCAGTGCCGTGATGTTGAGGCGGTCG
GCCATCCACATACAGGTACTACCTAATGAGTGACGTCTGTGTTCATCACA
TACATGCGATCAATCTCGCAATGGCCTCTTACCACTCACTAACTGCTGTT
TGCCCTCTTTTTGAATTTATTTGTTGCCAACGAGACTAGACTTGTAGTCT
ACACAAGTATGCTAGTCTAGCTGGACTTTTAGGCCCGTAGTTCCTCGCAG
GTTGAGCAGTTTTTAACACGTCGTCACCTCATCGTCTCTGGCAATTTTGA
CACGTTTCGCTGCCTGCGCACAAACGCCACCCGTCCATCGAACCAACGTA
ACAGGACCTTGACCACCAATGCTAGCATCTGGACGGCGGCAGAGCTGGGA
GATGCTGAGAGGGTGAAGATGGTAGTGAGGGTCAAAGGACGATCGCCGGA
CTCTCTCGACCCGCACGGTTACACCCCCCTACACCTCGCGGCGCAGAGTG
AGAATCGGTGTAGTTAGTTCAGCAGGAGCGGTTTACAAGGATTTTCAAGT
GTTACTGGTGTTGCTGGTGTTGCACGGGGAACACGTTCTTGTGGCGCCGC
ATGCTTGGAGATCTGAGTTGAAGATGCATGTTCTGGCACAACCACCTCGA
GGGCAAACAGCTGACTTTGCTTTCCCGGCGCAAGCAAGCACATCGTACGC
ACGACGCACTTGTATTTCGACGGGCGCAGCTCGAAATGCTGTTGTATGAT
TTTGCCCTCCTTGTTGGGTTTTGGCTTTGTCGTTCGTTGCTGCACCCCGC
AGATGGGAGGCTTGCTGTAGTGCAGTACCTCCTCGAAGCCGGCGCCAGCC
CCGACGGCGTACCTGCAGACGCGGGCGGTTGCGGAGCCACTCCTCTCCAT
AGGTGAGGCACCTCGCAAGTCACAAGCAGATGGAACCCATTCCCCTCGCG
GTTTTATTCCATCCTTGCATCGGTGACATGCCAGTCCACGACACGAGAAG
AATATTATGATAGCTTTCGTAGACTGTCCGTCTGCTTCTTTGATGGCTTG
TGGCAAAGCATTACGCCGACCGGCTCTGACTGTAACCGCGTCTAAAAGGT
GTGCGCGTTTTCTGTCTCGTGGTGCGCCCGCGTTATGCGTACTTTTTTGC
TTCGTGTGACCGTAGACCTGACCGAACGTGTAGGTTTTCTCTGTATACTA
TACGAGGCAGATGCTGCTGTTTATTGGAAGAAAACATTCCCCGCCACCCT
CGTGTAGACGACACCGGTGCGACGCACTTCTTCGCGCAGTTCATTCAAGC
CTCCCGCCAAGAACTTTACCAGCAGCCCTCTCTCTTTTCGCTGAAACATC
GCATCATACCACATTCATCACCCAAAAGTGCTGTCCAAATCCTCAACTAC
TGCTGCTGCTGCTGCTGCTGCTGCTCCCACGCTCAGGGCTGCTTTTGCCG
GACAACTTCCTTGTGTGCAGGCCCTTCTCGCCGCGGGCGCGAAGCACTCC
GCCGCCGACATCTCGTTTCTCGACATGAAAACCCCTCTCCAGAAGGCCGC
CGGGCAGGGGCACAGGGACACCTGCATCGCGCTCATGGAAGCCGGAGCAG
ACCCAAATACACGCGACGCCGCTGGCAACTGCGCGTTGGACGTACTGGAC
CTATCGTCGCCGGCTCTCTCGGACGTTGCGCTCCTGTCGGCCCCCCAGAC
CAACGGCGGCGGCGGCGGCACCGAGGCGTGCAGCAGCACTGTGGTCCTGT
CGAGGGGGGGCAAGCAGGACTGGAGCGGCGTGAGAGAGGCGTTGGAGCGA
TACGGCGGTTGTCGCAATCTCCGCGAGGCGAACGGAGCAAGAGACAATGA
CGGTGACGGCCGTAGCTACGACGGTGGTGATGGCGGTGGTGTTAGCAGTG
CAAGCAGGAATCGCGGCGCCAGCGGCGGTGCGCTCGCGGGAGCAGGACCC
GAGCAGGAGAGCACGACTGTGCCCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCGATAGCCTCTGCTTCAATAGAAGCGATTGAAACCGATGCGGGTT
TTGGTGTTGATGTTGAGGGATCCGAGGAAGCGTTGGCGGGACCAGCAAGT
TGTTGCACCCAGGCGCGTGGTGCACCAAGTGAGGTCGATGCTATTGCCGC
GCCCGCTCCGGTGTCGTCGAAGGGGCAGGTGGCAGACACCCCTCGATCCG
GCCATGGCAGCAGGAGTGCCGGCATACCCTGCGGCGAGTGCCTGCTTCCC
AAGATGGTGATGGTACGCGCGTCGTGCTGCGGGGGACTGCTGTGCAAGCC
TTGTGTGCGGGAGATCTGCGCGCGGCGCTGTAGTTGCCGCCGGTGTCGTG
ATTCTGGAGGGGCCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig80:322015..324531+

>mRNA_C-linearis_contig80.15866.1 ID=mRNA_C-linearis_contig80.15866.1|Name=mRNA_C-linearis_contig80.15866.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at C-linearis_contig80:322015..324531+ (Chordaria linearis ClinC8C monoicous)
ATGAATCTCGTGTACGGTTCTTTCTGCCCCCTGCACGAGGGAAACGATCG
ATGCCCGTGCCGATGAATCTCGTGTACGGTTCTTTCTGCCCCCTGCACGA
GGGAAACGATCGATGCCCGTGCCGGACCTTGACCACCAATGCTAGCATCT
GGACGGCGGCAGAGCTGGGAGATGCTGAGAGGGTGAAGATGGTAGTGAGG
GTCAAAGGACGATCGCCGGACTCTCTCGACCCGCACGGTTACACCCCCCT
ACACCTCGCGGCGCAGAGACCTTGACCACCAATGCTAGCATCTGGACGGC
GGCAGAGCTGGGAGATGCTGAGAGGGTGAAGATGGTAGTGAGGGTCAAAG
GACGATCGCCGGACTCTCTCGACCCGCACGGTTACACCCCCCTACACCTC
GCGGCGCAGAATGGGAGGCTTGCTGTAGTGCAGTACCTCCTCGAAGCCGG
CGCCAGCCCCGACGGCGTACCTGCAGACGCGGGCGGTTGCGGAGCCACTC
CTCTCCATAGATGGGAGGCTTGCTGTAGTGCAGTACCTCCTCGAAGCCGG
CGCCAGCCCCGACGGCGTACCTGCAGACGCGGGCGGTTGCGGAGCCACTC
CTCTCCATAGGGCTGCTTTTGCCGGACAACTTCCTTGTGTGCAGGCCCTT
CTCGCCGCGGGCGCGAAGCACTCCGCCGCCGACATCTCGTTTCTCGACAT
GAAAACCCCTCTCCAGAAGGCCGCCGGGCAGGGGCACAGGGACACCTGCA
TCGCGCTCATGGAAGCCGGAGCAGACCCAAATACACGCGACGCCGCTGGC
AACTGCGCGTTGGACGTACTGGACCTATCGTCGCCGGCTCTCTCGGACGT
TGCGCTCCTGTCGGCCCCCCAGACCAACGGCGGCGGCGGCGGCACCGAGG
CGTGCAGCAGCACTGTGGTCCTGTCGAGGGGGGGCAAGCAGGACTGGAGC
GGCGTGAGAGAGGCGTTGGAGCGATACGGCGGTTGTCGCAATCTCCGCGA
GGCGAACGGAGCAAGAGACAATGACGGTGACGGCCGTAGCTACGACGGTG
GTGATGGCGGTGGTGTTAGCAGTGCAAGCAGGAATCGCGGCGCCAGCGGC
GGTGCGCTCGCGGGAGCAGGACCCGAGCAGGAGAGCACGACTGTGCCCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGATAGCCTCTGCTTCAATAG
AAGCGATTGAAACCGATGCGGGTTTTGGTGTTGATGTTGAGGGATCCGAG
GAAGCGTTGGCGGGACCAGCAAGTTGTTGCACCCAGGCGCGTGGTGCACC
AAGTGAGGTCGATGCTATTGCCGCGCCCGCTCCGGTGTCGTCGAAGGGGC
AGGTGGCAGACACCCCTCGATCCGGCCATGGCAGCAGGAGTGCCGGCATA
CCCTGCGGCGAGTGCCTGCTTCCCAAGATGGTGATGGTACGCGCGTCGTG
CTGCGGGGGACTGCTGTGCAAGCCTTGTGTGCGGGAGATCTGCGCGCGGC
GCTGTAGTTGCCGCCGGTGTCGTGATTCTGGAGGGGCCTGAGGCTGCTTT
TGCCGGACAACTTCCTTGTGTGCAGGCCCTTCTCGCCGCGGGCGCGAAGC
ACTCCGCCGCCGACATCTCGTTTCTCGACATGAAAACCCCTCTCCAGAAG
GCCGCCGGGCAGGGGCACAGGGACACCTGCATCGCGCTCATGGAAGCCGG
AGCAGACCCAAATACACGCGACGCCGCTGGCAACTGCGCGTTGGACGTAC
TGGACCTATCGTCGCCGGCTCTCTCGGACGTTGCGCTCCTGTCGGCCCCC
CAGACCAACGGCGGCGGCGGCGGCACCGAGGCGTGCAGCAGCACTGTGGT
CCTGTCGAGGGGGGGCAAGCAGGACTGGAGCGGCGTGAGAGAGGCGTTGG
AGCGATACGGCGGTTGTCGCAATCTCCGCGAGGCGAACGGAGCAAGAGAC
AATGACGGTGACGGCCGTAGCTACGACGGTGGTGATGGCGGTGGTGTTAG
CAGTGCAAGCAGGAATCGCGGCGCCAGCGGCGGTGCGCTCGCGGGAGCAG
GACCCGAGCAGGAGAGCACGACTGTGCCCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCGATAGCCTCTGCTTCAATAGAAGCGATTGAAACCGATGC
GGGTTTTGGTGTTGATGTTGAGGGATCCGAGGAAGCGTTGGCGGGACCAG
CAAGTTGTTGCACCCAGGCGCGTGGTGCACCAAGTGAGGTCGATGCTATT
GCCGCGCCCGCTCCGGTGTCGTCGAAGGGGCAGGTGGCAGACACCCCTCG
ATCCGGCCATGGCAGCAGGAGTGCCGGCATACCCTGCGGCGAGTGCCTGC
TTCCCAAGATGGTGATGGTACGCGCGTCGTGCTGCGGGGGACTGCTGTGC
AAGCCTTGTGTGCGGGAGATCTGCGCGCGGCGCTGTAGTTGCCGCCGGTG
TCGTGATTCTGGAGGGGCCTGA
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