mRNA_C-linearis_contig80.15852.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15852.1
Unique NamemRNA_C-linearis_contig80.15852.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 790 bits (2040), Expect = 1.170e-274
Identity = 436/621 (70.21%), Postives = 484/621 (77.94%), Query Frame = 1 
Query:  226 MGPTAVAIHLTNLLALTSALAVGYAVGRLVGRGNKEVTLTR--STRGAKRRARIKRSEDNSVARAAGLASPPSSAEAKPSRR-----SRHRAKNLAPRCLALDSWARVARPYMKGIGAGDYESLLLLPRACFVVAGKFAPFAECRHQLVSLGQARAATAGVDQLRLLYVISSWANAGGDGGTGWAVRDFETTREFLQRNPDLGYVYIGPSCVAGSS--TGIAASTQLTHVIPALLRSDALLVLPPQA------EGN------YTDFRL---GSWSRMVLAVAAVGQAKIFVAFRAEPLPESVLELELGKGNVRVIAARAAGELRDAAKSKKNAATE-VVGAASENWLGAELNPLLALEEARAVVAAALKSDDSKVLESIRCMRPAQTPELMASTFASLGEERVEGERELALSMLLFTVLCSQPKERATYTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHEEQRDFLPKFSVGATLVHTATG 2013
            MGPT VA+   N+LAL+SAL VGYAVGR  G G K+ T     S RGAKRRARIK+SEDNS ARAAGLAS                 +R R K LAPRCLALD+W RVAR Y+K IG GDYESLLLLPR CF+VAG+F P+AECR QLVSLGQARAATAGV+QLR+LYV  SWA+AGG  GTGWAV+DFETTR +LQRNPDL +VY+G SCV GSS  TG   STQL HV PALLRSDA+LVLP  A      EG+      YTDF     GS SRMVLA+AAVGQAK+FVAFRA   PESV+ELELGK NVR  A +A   LR AA  +   +T  VV  A ENWLGA+LNPL ALE+ARAVV  A +SDD + LE+I+ MRPA  P   A+  A+LG+E +  ERELALSMLLF VLCSQ KERATYT+ FVED  KMEISY P+AVVRSPYRERFGTPRQPQVTASV  G AQEGQ+VF +G GYEEAL+DLSGFDMIWV++HMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRV R+D + GVI+V GLDLLDGTPVLDIKPYI YCDAFP++KAGWLDALGSDHE Q DFLPKFSVGATLVHT  G
Sbjct:    1 MGPT-VAVVAANILALSSALVVGYAVGRFEGGGGKKETQQHPCSVRGAKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXXTRSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAAKRPQKSTAAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRPA--PSFAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHERQGDFLPKFSVGATLVHTDAG 618
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.420e-62
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 1 
Query: 1489 IAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHEEQRDFLP 1971
            I VVRSPY+ERFGTPRQ  VTA V  G+AQ GQLVF +G  +E AL+DL GFD +WVIS+MHLN+GWNPKV+PPR P  ++GLFSTRSPHRPN+IALS++++  +D     + V+GLDLLDGTP+LDIKPY+ YCDAFP  K GWL+ L S  E   D+LP
Sbjct:    6 IGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSSIDEV--DYLP 164
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 202 bits (515), Expect = 1.820e-55
Identity = 97/172 (56.40%), Postives = 125/172 (72.67%), Query Frame = 1 
Query: 1420 KERATYTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDA 1932
            K +  YT++F    +   +S   IAVVRSPY+ERFGTPRQP VT    GG AQ G++VF K   +E AL+DL GF+  W+I++ HLNKGWNPKV+PPR   + K GLF+TRSPHRPN I LS+ ++  +D  +GV+ V GLDLLDGTPVLD+KPY+ Y DAFP  +AGWL++
Sbjct:   55 KPQQFYTEQFTTPES---VSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWLNS 223
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 198 bits (503), Expect = 1.310e-53
Identity = 101/189 (53.44%), Postives = 126/189 (66.67%), Query Frame = 1 
Query: 1447 FVEDAAKME-ISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVR--PPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHEEQRDF----LPKFSVGAT 1992
            + EDA   E I   PI VVRSPY+ERFGTPRQP VT    GG  Q   +   +GHGYE  L+D+ GF+ +W+I++MHLN+GW  KVR  P +LP  R GLF+TR+PHRPN +ALS++ V  +DV  G +H+ GLDLLDGTPVLDIKPY+ Y DAFP   AGWLD    + +  RD     LP +  G T
Sbjct:   77 YAEDADVPEAIEMHPIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYVPYADAFPDSAAGWLDQYDREQQMGRDEFGHELPPWCAGDT 264
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A2V3J262_9FLOR (tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J262_9FLOR)

HSP 1 Score: 194 bits (494), Expect = 2.780e-52
Identity = 91/170 (53.53%), Postives = 120/170 (70.59%), Query Frame = 1 
Query: 1435 YTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSD 1944
            YTD F       ++S   I VVRS Y+ERFGTPRQP VT +  G + Q   +  ++   Y+ AL+ L+ F+  WVIS+ HLN+G+NP V PPR P +++G+F+TRSPHRPN+I LS +R+  +D  KG+IHV G+DLLDGTPVLD+KPY+ YCD+FP  KAGWLD L  D
Sbjct:   55 YTDDF---ETPTQVSLNTIGVVRSLYKERFGTPRQPNVTKNTLGNQMQPATIQLYESCKYDLALRGLAQFEYCWVISYFHLNQGFNPLVTPPRGPRKKQGVFATRSPHRPNSIGLSCIRITGVDEKKGLIHVLGVDLLDGTPVLDVKPYVPYCDSFPKAKAGWLDTLRED 221
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 192 bits (487), Expect = 4.470e-52
Identity = 87/174 (50.00%), Postives = 124/174 (71.26%), Query Frame = 1 
Query: 1435 YTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEAL--KDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHE 1950
            +TD F      ++++ R I VVRSPY+ERFG PRQP ++  V GG AQEG + F      + AL  KDL GF+ IW++ ++HLN+GW+P+V PPR   +++GLF+TRSPHRPN I+LS+ ++  +D     + V GLDLLDGTPVLD+KPY+ YCD++PS +AGW+D +  +H+
Sbjct:   31 HTDAF---PTPLQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGEHD 201
[Close]
BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: UPI001AD54E4C (tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD54E4C)

HSP 1 Score: 187 bits (476), Expect = 4.300e-51
Identity = 91/167 (54.49%), Postives = 119/167 (71.26%), Query Frame = 1 
Query: 1459 AAKME-ISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHEEQ 1956
            AA++E +    I  V SPY+ERFGTPRQP VT       AQE  +    G  +E+ALKDL GF+ IWV++ +HLN+GWNP+V PPR P+ ++GLF+TR+PHRPN+I LS+L++  ID     + V G+DLLDGTPVLDIKPYI Y DAFP  +AGWL+ L SD  ++
Sbjct:   14 AARVERVECEIIGYVHSPYKERFGTPRQPPVTEQTLDDRAQEAMIELVPGRNFEQALKDLEGFEYIWVLAWLHLNEGWNPQVIPPRGPKVKRGLFATRAPHRPNSIGLSALKLVGIDGR--TLKVSGIDLLDGTPVLDIKPYIPYSDAFPKARAGWLEGLKSDEPDR 178
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BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 192 bits (487), Expect = 4.830e-51
Identity = 93/173 (53.76%), Postives = 121/173 (69.94%), Query Frame = 1 
Query: 1435 YTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDALGSDHE 1950
            YTD F + AA   ++  PI V+RSPY+ERFGTPRQP VT  V+GG AQ G +      G +  L+ L+GFD  W I+ MHLN GW P VRPPR P   K G+F+TR+PHRPN IALS+L+V  +D +   + V+GLDLLDGTPVLD+KPY+ Y D+FP  KAGW+D + ++ +
Sbjct:   32 YTDAFADHAAA-PVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRAEED 203
[Close]
BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A7S3A0C0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A0C0_9RHOD)

HSP 1 Score: 188 bits (478), Expect = 1.420e-50
Identity = 86/152 (56.58%), Postives = 108/152 (71.05%), Query Frame = 1 
Query: 1474 ISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLD 1929
            +S + I VVRSPY+ERFGTPRQ  V     G   Q+G++       YE AL+ L GFD  WVI  MHLN GWNP V PPR P  ++G+F+TR+PHRPN I+LS+L++ R+D    ++HV GLDLLDGTP+LDIKPY+ Y DAFP+  AGWLD
Sbjct:   48 MSVQAIGVVRSPYKERFGTPRQATVWEQSIGNAPQDGEIHLIGDPRYEHALRGLDGFDYCWVICWMHLNTGWNPLVTPPRGPRTKQGIFATRAPHRPNPISLSALKITRVDYKNRIVHVKGLDLLDGTPILDIKPYVPYADAFPNAAAGWLD 199
[Close]
BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Match: A0A7S2IIV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IIV7_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 3.100e-50
Identity = 96/206 (46.60%), Postives = 134/206 (65.05%), Query Frame = 1 
Query: 1318 LMASTFASLGEERVEGERELALSMLLFTVLCSQPKERATYTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGEAQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDIKPYIAYCDAFPSMKAGWLDAL 1935
            L+ S+ A  G  R+     L +S          P E   YT+ F E +A ++++  PI  V SPY+ERFGTPRQP V+A  AGG   +G +V        +AL DL GF  +W++S++HLN+GW  +V+PPR P++R+GLF+TR+PHRPN + +S++ +  +D   G +HV GLDLLD TPVLD+KPYI YCD+ P  KAGW+DAL
Sbjct:   31 LLVSSVAWFGASRMTSS-SLVMSSAADPRSMRPPLE---YTEAFRE-SAHLDVNLSPIGFVESPYKERFGTPRQPVVSALTAGGAMLDGCVVLRPD--LADALVDLEGFSHMWIVSYLHLNRGWKLRVKPPRGPKQRRGLFATRAPHRPNQLGMSAVEITAVDHIGGRVHVRGLDLLDHTPVLDLKPYIPYCDSIPDAKAGWVDAL 229
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBB4_9PHAE1.170e-27470.21TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNQ9_9STRA1.420e-6263.98TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XP01_HETAK1.820e-5556.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4F040_VITBC1.310e-5353.44TsaA-like domain-containing protein n=2 Tax=Vitrel... [more]
A0A2V3J262_9FLOR2.780e-5253.53tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gr... [more]
A0A7S1WEL1_ALECA4.470e-5250.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
UPI001AD54E4C4.300e-5154.49tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Pl... [more]
R1DL83_EMIHU4.830e-5153.76TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
A0A7S3A0C0_9RHOD1.420e-5056.58Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2IIV7_9EUKA3.100e-5046.60Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:242784..246848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score795.4
Seed ortholog evalue1.9e-227
Seed eggNOG ortholog2880.D7FI01
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
Ec32 ortholog descriptionTsaA-like domain
Ec32 orthologEc-12_006540.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size3104
Cds size1875
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15852.1prot_C-linearis_contig80.15852.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 243791..246626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.5219388-UTR-C-linearis_contig80:242783..2437901622930583.5219388-UTR-C-linearis_contig80:242783..243790Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 242784..243790 -
1690881145.1824272-UTR-C-linearis_contig80:242783..2437901690881145.1824272-UTR-C-linearis_contig80:242783..243790Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 242784..243790 -
1622930583.592222-UTR-C-linearis_contig80:246626..2468481622930583.592222-UTR-C-linearis_contig80:246626..246848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 246627..246848 -
1690881145.2728317-UTR-C-linearis_contig80:246626..2468481690881145.2728317-UTR-C-linearis_contig80:246626..246848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 246627..246848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.5360134-CDS-C-linearis_contig80:243790..2440351622930583.5360134-CDS-C-linearis_contig80:243790..244035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 243791..244035 -
1690881145.2060602-CDS-C-linearis_contig80:243790..2440351690881145.2060602-CDS-C-linearis_contig80:243790..244035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 243791..244035 -
1622930583.548396-CDS-C-linearis_contig80:244489..2447261622930583.548396-CDS-C-linearis_contig80:244489..244726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 244490..244726 -
1690881145.2251213-CDS-C-linearis_contig80:244489..2447261690881145.2251213-CDS-C-linearis_contig80:244489..244726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 244490..244726 -
1622930583.5623243-CDS-C-linearis_contig80:244997..2450921622930583.5623243-CDS-C-linearis_contig80:244997..245092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 244998..245092 -
1690881145.24108-CDS-C-linearis_contig80:244997..2450921690881145.24108-CDS-C-linearis_contig80:244997..245092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 244998..245092 -
1622930583.5760567-CDS-C-linearis_contig80:245328..2466261622930583.5760567-CDS-C-linearis_contig80:245328..246626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 245329..246626 -
1690881145.2554162-CDS-C-linearis_contig80:245328..2466261690881145.2554162-CDS-C-linearis_contig80:245328..246626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 245329..246626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15852.1

>prot_C-linearis_contig80.15852.1 ID=prot_C-linearis_contig80.15852.1|Name=mRNA_C-linearis_contig80.15852.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=625bp
MMGPTAVAIHLTNLLALTSALAVGYAVGRLVGRGNKEVTLTRSTRGAKRR
ARIKRSEDNSVARAAGLASPPSSAEAKPSRRSRHRAKNLAPRCLALDSWA
RVARPYMKGIGAGDYESLLLLPRACFVVAGKFAPFAECRHQLVSLGQARA
ATAGVDQLRLLYVISSWANAGGDGGTGWAVRDFETTREFLQRNPDLGYVY
IGPSCVAGSSTGIAASTQLTHVIPALLRSDALLVLPPQAEGNYTDFRLGS
WSRMVLAVAAVGQAKIFVAFRAEPLPESVLELELGKGNVRVIAARAAGEL
RDAAKSKKNAATEVVGAASENWLGAELNPLLALEEARAVVAAALKSDDSK
VLESIRCMRPAQTPELMASTFASLGEERVEGERELALSMLLFTVLCSQPK
ERATYTDKFVEDAAKMEISYRPIAVVRSPYRERFGTPRQPQVTASVAGGE
AQEGQLVFFKGHGYEEALKDLSGFDMIWVISHMHLNKGWNPKVRPPRLPE
ERKGLFSTRSPHRPNAIALSSLRVDRIDVSKGVIHVDGLDLLDGTPVLDI
KPYIAYCDAFPSMKAGWLDALGSDHEEQRDFLPKFSVGATLVHTATGPNC
IPGSPTTPPDLGKQLTEEVPKEAS*
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mRNA from alignment at C-linearis_contig80:242784..246848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15852.1 ID=mRNA_C-linearis_contig80.15852.1|Name=mRNA_C-linearis_contig80.15852.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4065bp|location=Sequence derived from alignment at C-linearis_contig80:242784..246848- (Chordaria linearis ClinC8C monoicous)
GGTATATGGACAATTTAGGTCCTAAACTATCCATATTTGCCGTGGAGTTG
ACCGCGTGTTGCGAGTTGTGGGTGGCGATCAGCACTGCTGGTTGGTGTGT
TCAACGTCGATCGAAATCTGCACGCAATCCCATCACTGCTCTGTTGTTCA
ACAAATAGTCTATCGTGGATCGACTTTCTGATCTTCGTATGACAGAGGAT
AACATACATCCAAGTCACCCACATGATGGGTCCAACCGCCGTCGCGATCC
ATCTCACCAACTTGCTGGCCCTGACTTCTGCCTTAGCGGTTGGATACGCG
GTGGGAAGGTTGGTGGGCAGGGGTAACAAGGAGGTGACATTGACGCGGAG
CACCAGAGGGGCCAAGCGTCGAGCCCGAATCAAGAGGAGCGAGGATAACT
CCGTCGCGAGAGCGGCCGGCCTCGCGTCCCCTCCGTCCTCGGCAGAGGCC
AAGCCATCGCGAAGGTCCAGGCATCGAGCCAAGAATCTTGCGCCTCGATG
CCTGGCACTCGATTCCTGGGCACGTGTAGCCCGACCCTACATGAAGGGCA
TCGGGGCCGGAGACTACGAGTCGCTGCTCCTGCTGCCGAGGGCGTGCTTT
GTCGTCGCCGGGAAGTTCGCCCCTTTTGCGGAGTGCCGCCACCAGCTTGT
TTCTCTTGGCCAGGCAAGAGCGGCCACTGCCGGCGTCGATCAGCTCCGTT
TGCTCTACGTGATTTCCTCGTGGGCAAATGCTGGAGGGGACGGGGGCACA
GGCTGGGCGGTCCGGGACTTCGAGACAACTCGCGAATTTCTCCAGCGTAA
CCCGGACCTCGGGTACGTATACATCGGTCCGTCGTGCGTCGCGGGGAGCT
CCACCGGGATCGCGGCATCGACGCAGCTGACGCATGTCATTCCAGCTCTC
CTTCGATCAGATGCCTTGCTTGTGCTCCCACCCCAGGCAGAGGGCAACTA
CACCGACTTCAGGCTGGGCTCGTGGTCTCGAATGGTGCTTGCTGTGGCCG
CCGTCGGGCAGGCGAAGATTTTCGTCGCTTTCCGGGCCGAGCCGCTTCCT
GAATCCGTGTTGGAGCTTGAGCTAGGGAAGGGAAATGTCAGAGTGATTGC
AGCAAGGGCGGCGGGCGAGCTGAGAGATGCAGCAAAGTCAAAGAAGAACG
CGGCGACGGAGGTGGTAGGGGCCGCAAGCGAGAACTGGCTCGGGGCAGAG
CTGAACCCTCTTTTGGCGCTCGAGGAGGCCAGGGCGGTTGTGGCAGCGGC
GCTGAAATCGGACGACAGCAAAGTTCTGGAGAGCATCCGGTGCATGCGGC
CAGCTCAAACGCCCGAGTTGATGGCGAGCACATTTGCGTCTCTAGGGGAG
GAGCGCGTTGAAGGCGAGCGGGAGCTTGCGTTGTCGATGTTGCTTTTCAC
GGTGCTCTGTTCGCAACCCAAGGAGCGCGCCACCTACACGGACAAATTCG
TGGAAGACGCTGCCAAGATGGAGATATCCTACCGTCCTATTGCGGTGGTG
AGGAGTCCCTATCGGGAAAGGCAAGTCTTCCGTACCTTCAAGATTGTACC
CGGCTTGCATCTTCGAGTATACGCCCCGAGAGTTCAACCTTGCGTTTTGT
CTTAAGGGGACAGAGTAGTCCAAGCAGGAAGCCAGTCAAACACAGAACCC
TCCCCAGCTTTTTGTCAGGAGCTTGTTCTTCGTGCCACCCACAAGGTACC
ACTTGACTCCCCTCGGCCGCCTTTGCTTGTGGCCGTATCCTTTTCTTTGG
GGACAGATTTGGGACCCCACGGCAACCTCAGGTCACCGCCTCGGTTGCAG
GAGGGGAAGCGCAGGAGGGGCAGCTTGTCTTTTTCAAGGGGCATGGCTAT
GGCAAGTTGCGAATCGGAGAAGGTTGTCCTTGCTCTCTCACAACTGTATT
GACCTTTGGACTTGCAGGAACGTGTATAGTGCACTTCGTTGTCGTTCGTC
ACGCTTGAACAGGCCGTCGGATCTCGCATATACATACCTCCGCGAGATGG
CAGCCTCGCTTTACGTGGAGAGACTTCCCTAGACCCTGATGTCGACTTGT
ACCGCCATGTTTGGTTGTGCGTCATTTCTGACGTCGTTATATTTTCTGCA
TCCTCCGTGCTTCGTCGCCTAGAGGAAGCCCTGAAAGATTTGAGCGGGTT
CGACATGATCTGGGTGATCTCCCACATGCACCTCAACAAAGGATGGAATC
CCAAGGTTCGCCCCCCTCGGTTACCGGAGGAGCGCAAGGGCCTGTTTTCC
ACAAGGAGCCCACACAGGCCAAACGCCATCGCCCTGTCGTCGTTGCGCGT
GGACCGCATAGATGTTTCCAAAGGAGTGATTCATGTAGACGGCCTCGATC
TTCTCGACGGTGAGGGGGGAAAAAAAAACAATACTTGAATCGAGTGAAAA
CCTTGAGTCTTGGGAGTATGAATTGATGTAGTTGACACTGCTTGATTTTC
GCGCAGGTTTTTGTTGATTTCATATGCATCCAAGGTTACAAACCAACACG
TTGGTTTCAATTTGAGTTGGACCATCACCTGCAGGAGAGCTAGGTTTTCG
AGGTTCAGTAGTTACAGCAGGAGCGAGTTTTGTGCCCGATATTCTGCACA
ACAAGGGATTTCAATGGAATGTGCTCTGAGGCTTCCGCGTGTTTGTCGAG
AGGACCGCACCAGACGATGAACCCCCATTGGTTCGAGAATACTGCACGGC
CTCTCATAGCTGACCCTGTGCCTCTTTGATTTGATTTGGTCTTGTTGCTT
CTGCCACCTGTATCTTTTTCGGTGCTCTCTTCTGTCGCCTCTGGCGCGAA
ACGTGCGTGACAGGCACGCCTGTCCTAGACATCAAACCGTATATCGCTTA
CTGCGACGCGTTCCCCAGCATGAAGGCTGGCTGGCTGGATGCTCTTGGGT
CTGACCATGAGGAGCAGCGAGACTTCCTGCCCAAGTTTAGCGTTGGCGCC
ACGCTGGTGCACACCGCGACTGGTCCCAACTGCATCCCAGGCTCTCCTAC
CACCCCTCCTGACTTGGGGAAACAGCTGACTGAAGAAGTTCCCAAAGAGG
CTTCGTAGACCTTAGTCCTCCATGCGATACCGTGGTGGTACTCAGGTTGT
TAGAGAATTGCTACGCAGTGGGCAGCTGAGCAGCGAGACTTGGCAACGAC
ATACATTAAAGTACAAGGGGCCTAAAGCGCGGAGCTATAGAGCGGCGGTT
ACCATTTGGTTTAGGTGGAGATTTGCCAATGTAGATATGCCTTCGTAGAG
CGTGAGAAATATTTACCTCGTAACAGAGCAGGAAAGGTGGCAAAATACTT
CAAAGGTGTACTACTCGCCTAAAATTACCTGTATACGAAGTATTTTTCCA
TTTTTGCTTTCAGCTCATGTACCGTAAGTGTTCGAGAGTTGGCACACCTG
TGCGATCGATTTTTAAATCATTTGAAACTGGCTTTTTTAGCGCACAGGTG
TGCCAACTCTCGGACCCTGTGCGATCTCTCGGACCCTGTGCGGAATTTCA
ATTAAATGTTTTGGGTCTGCTCGTGTAGCGCACACCCCTGTGCGATCTCT
CCGACATGTGCGATGCTGAATCAACGATATTGATGGAACGGGTGCTTTCA
ACGCATACCCCTGTGCGATCTCTCCGATATGTGCGATCTCTCCGATAGAA
AAGGCAGCAGGAAGTTCGTGCCTTGGATTGTTATGGTGTGCGGTAGGTAA
AATTCGAGTTCGTTCTTAGGGTGCAGATGCCGAAGATCGGCGCGGTTGCT
CGCTGAAAGGTATTCTATATTTCTAGTCTGTTGGCACCAGCTTTGTTGTT
GTGTCCGTCGGTGTTGTTTTCTAGAGTCCGTCAGTACTACAGAGGCTGCG
GCCTGAAGTACCCTCTACCGCAGTACAAAATGGTACCTAACAAAGAAGTT
GCATACTTCGTATTTTTTATAAACACACCCGCCACACCGGACGGAGCACG
CACAACACAGAGCCTCGATGACTTTAATACTACTGCTGTGAAAAAAAATG
GTACAGATACAGGCCGTTGCAGCTCGCGGGTGTGCCCCTGGATGCAGTTC
AGGGGAAAAGGGTCC
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Coding sequence (CDS) from alignment at C-linearis_contig80:242784..246848-

>mRNA_C-linearis_contig80.15852.1 ID=mRNA_C-linearis_contig80.15852.1|Name=mRNA_C-linearis_contig80.15852.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3750bp|location=Sequence derived from alignment at C-linearis_contig80:242784..246848- (Chordaria linearis ClinC8C monoicous)
ATGATGGGTCCAACCGCCGTCGCGATCCATCTCACCAACTTGCTGGCCCT
GACTTCTGCCTTAGCGGTTGGATACGCGGTGGGAAGGTTGGTGGGCAGGG
GTAACAAGGAGGTGACATTGACGCGGAGCACCAGAGGGGCCAAGCGTCGA
GCCCGAATCAAGAGGAGCGAGGATAACTCCGTCGCGAGAGCGGCCGGCCT
CGCGTCCCCTCCGTCCTCGGCAGAGGCCAAGCCATCGCGAAGGTCCAGGC
ATCGAGCCAAGAATCTTGCGCCTCGATGCCTGGCACTCGATTCCTGGGCA
CGTGTAGCCCGACCCTACATGAAGGGCATCGGGGCCGGAGACTACGAGTC
GCTGCTCCTGCTGCCGAGGGCGTGCTTTGTCGTCGCCGGGAAGTTCGCCC
CTTTTGCGGAGTGCCGCCACCAGCTTGTTTCTCTTGGCCAGGCAAGAGCG
GCCACTGCCGGCGTCGATCAGCTCCGTTTGCTCTACGTGATTTCCTCGTG
GGCAAATGCTGGAGGGGACGGGGGCACAGGCTGGGCGGTCCGGGACTTCG
AGACAACTCGCGAATTTCTCCAGCGTAACCCGGACCTCGGGTACGTATAC
ATCGGTCCGTCGTGCGTCGCGGGGAGCTCCACCGGGATCGCGGCATCGAC
GCAGCTGACGCATGTCATTCCAGCTCTCCTTCGATCAGATGCCTTGCTTG
TGCTCCCACCCCAGGCAGAGGGCAACTACACCGACTTCAGGCTGGGCTCG
TGGTCTCGAATGGTGCTTGCTGTGGCCGCCGTCGGGCAGGCGAAGATTTT
CGTCGCTTTCCGGGCCGAGCCGCTTCCTGAATCCGTGTTGGAGCTTGAGC
TAGGGAAGGGAAATGTCAGAGTGATTGCAGCAAGGGCGGCGGGCGAGCTG
AGAGATGCAGCAAAGTCAAAGAAGAACGCGGCGACGGAGGTGGTAGGGGC
CGCAAGCGAGAACTGGCTCGGGGCAGAGCTGAACCCTCTTTTGGCGCTCG
AGGAGGCCAGGGCGGTTGTGGCAGCGGCGCTGAAATCGGACGACAGCAAA
GTTCTGGAGAGCATCCGGTGCATGCGGCCAGCTCAAACGCCCGAGTTGAT
GGCGAGCACATTTGCGTCTCTAGGGGAGGAGCGCGTTGAAGGCGAGCGGG
AGCTTGCGTTGTCGATGTTGCTTTTCACGGTGCTCTGTTCGCAACCCAAG
GAGCGCGCCACCTACACGGACAAATTCGTGGAAGACGCTGCCAAGATGGA
GATATCCTACCGTCCTATTGCGGTGGTGAGGAGTCCCTATCGGGAAAGAT
GATGGGTCCAACCGCCGTCGCGATCCATCTCACCAACTTGCTGGCCCTGA
CTTCTGCCTTAGCGGTTGGATACGCGGTGGGAAGGTTGGTGGGCAGGGGT
AACAAGGAGGTGACATTGACGCGGAGCACCAGAGGGGCCAAGCGTCGAGC
CCGAATCAAGAGGAGCGAGGATAACTCCGTCGCGAGAGCGGCCGGCCTCG
CGTCCCCTCCGTCCTCGGCAGAGGCCAAGCCATCGCGAAGGTCCAGGCAT
CGAGCCAAGAATCTTGCGCCTCGATGCCTGGCACTCGATTCCTGGGCACG
TGTAGCCCGACCCTACATGAAGGGCATCGGGGCCGGAGACTACGAGTCGC
TGCTCCTGCTGCCGAGGGCGTGCTTTGTCGTCGCCGGGAAGTTCGCCCCT
TTTGCGGAGTGCCGCCACCAGCTTGTTTCTCTTGGCCAGGCAAGAGCGGC
CACTGCCGGCGTCGATCAGCTCCGTTTGCTCTACGTGATTTCCTCGTGGG
CAAATGCTGGAGGGGACGGGGGCACAGGCTGGGCGGTCCGGGACTTCGAG
ACAACTCGCGAATTTCTCCAGCGTAACCCGGACCTCGGGTACGTATACAT
CGGTCCGTCGTGCGTCGCGGGGAGCTCCACCGGGATCGCGGCATCGACGC
AGCTGACGCATGTCATTCCAGCTCTCCTTCGATCAGATGCCTTGCTTGTG
CTCCCACCCCAGGCAGAGGGCAACTACACCGACTTCAGGCTGGGCTCGTG
GTCTCGAATGGTGCTTGCTGTGGCCGCCGTCGGGCAGGCGAAGATTTTCG
TCGCTTTCCGGGCCGAGCCGCTTCCTGAATCCGTGTTGGAGCTTGAGCTA
GGGAAGGGAAATGTCAGAGTGATTGCAGCAAGGGCGGCGGGCGAGCTGAG
AGATGCAGCAAAGTCAAAGAAGAACGCGGCGACGGAGGTGGTAGGGGCCG
CAAGCGAGAACTGGCTCGGGGCAGAGCTGAACCCTCTTTTGGCGCTCGAG
GAGGCCAGGGCGGTTGTGGCAGCGGCGCTGAAATCGGACGACAGCAAAGT
TCTGGAGAGCATCCGGTGCATGCGGCCAGCTCAAACGCCCGAGTTGATGG
CGAGCACATTTGCGTCTCTAGGGGAGGAGCGCGTTGAAGGCGAGCGGGAG
CTTGCGTTGTCGATGTTGCTTTTCACGGTGCTCTGTTCGCAACCCAAGGA
GCGCGCCACCTACACGGACAAATTCGTGGAAGACGCTGCCAAGATGGAGA
TATCCTACCGTCCTATTGCGGTGGTGAGGAGTCCCTATCGGGAAAGATTT
GGGACCCCACGGCAACCTCAGGTCACCGCCTCGGTTGCAGGAGGGGAAGC
GCAGGAGGGGCAGCTTGTCTTTTTCAAGGGGCATGGCTATGATTTGGGAC
CCCACGGCAACCTCAGGTCACCGCCTCGGTTGCAGGAGGGGAAGCGCAGG
AGGGGCAGCTTGTCTTTTTCAAGGGGCATGGCTATGAGGAAGCCCTGAAA
GATTTGAGCGGGTTCGACATGATCTGGGTGATCTCCCACATGCACCTCAA
CAAAGGATGGAATCCCAAGGTTCGCCCCCCTCGGTTACCGGAGGAGCGCA
AGGGCCTGTTTTCCACAAGGAGCCCACACAGGCCAAACGCCATCGCCCTG
TCGTCGTTGCGCGTGGACCGCATAGATGTTTCCAAAGGAGTGATTCATGT
AGACGGCCTCGATCTTCTCGACGAGGAAGCCCTGAAAGATTTGAGCGGGT
TCGACATGATCTGGGTGATCTCCCACATGCACCTCAACAAAGGATGGAAT
CCCAAGGTTCGCCCCCCTCGGTTACCGGAGGAGCGCAAGGGCCTGTTTTC
CACAAGGAGCCCACACAGGCCAAACGCCATCGCCCTGTCGTCGTTGCGCG
TGGACCGCATAGATGTTTCCAAAGGAGTGATTCATGTAGACGGCCTCGAT
CTTCTCGACGGCACGCCTGTCCTAGACATCAAACCGTATATCGCTTACTG
CGACGCGTTCCCCAGCATGAAGGCTGGCTGGCTGGATGCTCTTGGGTCTG
ACCATGAGGAGCAGCGAGACTTCCTGCCCAAGTTTAGCGTTGGCGCCACG
CTGGTGCACACCGCGACTGGTCCCAACTGCATCCCAGGCTCTCCTACCAC
CCCTCCTGACTTGGGGAAACAGCTGACTGAAGAAGTTCCCAAAGAGGCTT
CGTAGGCACGCCTGTCCTAGACATCAAACCGTATATCGCTTACTGCGACG
CGTTCCCCAGCATGAAGGCTGGCTGGCTGGATGCTCTTGGGTCTGACCAT
GAGGAGCAGCGAGACTTCCTGCCCAAGTTTAGCGTTGGCGCCACGCTGGT
GCACACCGCGACTGGTCCCAACTGCATCCCAGGCTCTCCTACCACCCCTC
CTGACTTGGGGAAACAGCTGACTGAAGAAGTTCCCAAAGAGGCTTCGTAG
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