mRNA_C-linearis_contig80.15850.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15850.1
Unique NamemRNA_C-linearis_contig80.15850.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:160702..162973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size799
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15850.1prot_C-linearis_contig80.15850.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 161393..162949 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.3314016-UTR-C-linearis_contig80:160701..1608921622930581.3314016-UTR-C-linearis_contig80:160701..160892Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 160702..160892 -
1690881143.8935728-UTR-C-linearis_contig80:160701..1608921690881143.8935728-UTR-C-linearis_contig80:160701..160892Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 160702..160892 -
1622930581.3479033-UTR-C-linearis_contig80:161363..1613921622930581.3479033-UTR-C-linearis_contig80:161363..161392Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 161364..161392 -
1690881143.9043539-UTR-C-linearis_contig80:161363..1613921690881143.9043539-UTR-C-linearis_contig80:161363..161392Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 161364..161392 -
1622930581.4056218-UTR-C-linearis_contig80:162949..1629731622930581.4056218-UTR-C-linearis_contig80:162949..162973Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 162950..162973 -
1690881143.9383283-UTR-C-linearis_contig80:162949..1629731690881143.9383283-UTR-C-linearis_contig80:162949..162973Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 162950..162973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.3647707-CDS-C-linearis_contig80:161392..1617581622930581.3647707-CDS-C-linearis_contig80:161392..161758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 161393..161758 -
1690881143.9139917-CDS-C-linearis_contig80:161392..1617581690881143.9139917-CDS-C-linearis_contig80:161392..161758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 161393..161758 -
1622930581.3827708-CDS-C-linearis_contig80:162760..1629491622930581.3827708-CDS-C-linearis_contig80:162760..162949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 162761..162949 -
1690881143.9283807-CDS-C-linearis_contig80:162760..1629491690881143.9283807-CDS-C-linearis_contig80:162760..162949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 162761..162949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15850.1

>prot_C-linearis_contig80.15850.1 ID=prot_C-linearis_contig80.15850.1|Name=mRNA_C-linearis_contig80.15850.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=185bp
MIAEPRGGGSEGGMPRQPRQVGAGSRSCGLTPSRRSWHWPTSGRQCLLLS
GGNGSEDSCLREEGVRTLQECAGSCLGPIFAPDTINSIADSHRLLRRYVF
TPYPESVDDASSDDDQDMNTGAGGDASTRTTRTGPWGMEASHGDERRKEY
DGFLDYGSPPSRKRGKLHYFRAGGDDVFHLSDSE*
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mRNA from alignment at C-linearis_contig80:160702..162973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15850.1 ID=mRNA_C-linearis_contig80.15850.1|Name=mRNA_C-linearis_contig80.15850.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2272bp|location=Sequence derived from alignment at C-linearis_contig80:160702..162973- (Chordaria linearis ClinC8C monoicous)
GGTGGTTCGCGCGTGTCCGTAGTCATGATCGCCGAGCCTCGTGGAGGGGG
CTCAGAGGGAGGCATGCCCAGACAACCGCGACAGGTCGGAGCTGGATCTC
GATCGTGTGGTTTAACTCCGTCAAGGCGCTCTTGGCACTGGCCGACGAGT
GGTAGACAGTGTCTCCTGTTAAGCGGCGGCAACGGGAGTGAAGACTCTTG
TCTTCGCGAAGAGGTGGGTGCCACTTCCGTAAGTTTATGCGTTTGTTCTT
CACGGGACAAGGACTTTTTTCTTGGACAACAATTCCTTGTCCTAAGGTCC
AAACCAAAACGTGCTTCGCGCTCGCCATGGCTAGAGAAGACATTAACCCT
TTCGTGACTAGACCCCACTCTAGCTCCGGTCATAGCTCCGATCGTATTCC
GAGCCTTTTTTACCAGTCAACGCTATATACATTGCCCCGCGCGTTTACGC
TGGTGCTGGTGTGTGTGTCGGTGGTTCTGCGTGTGCTGTTATCTACCAAT
GCATCAATCCCAGTCAAAAGCCAGACACCTATCGTGAAATCGCACCACTT
TTATTTCCGATGATCGGAGTTGTGATCGGAGCTGTAGTCCCCCGGCACTG
TTTTCTAGTACAACTCGCCCTCCATCTAGCTCTCCCCTTGGTTCTTTTTT
AAAATGGGCGGCGAAGTTTTCCAAAGAATGAGATTAAAAACGGAGCCACA
GCAGTTTTACACACACGTGCGTTGCTAACCCCGCTGAGATTAGGTCTTGT
TCAGCAGGTAGAGAATGAGGATGAGGGGAAAATATGTATAAACAGACGGG
CAGAGACAGAGAGTGACGGGAGAGAGGAGAGAGCGCGCCACGACGGCTGC
GTTGCTGTGTTGCGGGCGTGTGTGGGTGTGCGCGTGTACAACATACAGAA
GTAGCAGAATAATTTTCTTTGAAAATTGAAAAAATAGACAATTGTCAATA
GGATTCAACCAGTCGTGGTGGTGCTATGGCCCCTTTTGACGGGTGTGCTA
CATACGTACGCATATTGCACCTGGTTGCTGGTATTTCTAGTACAGCCGGC
GTCCCATTATTGTCGGATTTTTTCGGGCAAAGGCCGTGGGTTGTCTGTTG
TTGAAACCACGCAAGAAATGCCAAGAACGTTCCCGCAATTCGACACCTTT
TTAATCCAAAGCAACCCCGGATCCCGCGTATTTTCACTTGTTCGCGACCG
GTTACGTTCCCACAGGGTGTGAGAACGCTGCAAGAGTGCGCTGGGAGCTG
CCTCGGGCCCATCTTCGCCCCGGACACGATTAACTCCATCGCGGACTCCC
ACAGGCTGCTCAGGCGCTACGTCTTTACACCTTACCCCGAAAGCGTCGAC
GACGCCAGCAGCGACGACGACCAAGATATGAACACCGGTGCTGGCGGCGA
CGCGAGTACTCGGACGACGAGGACGGGCCCGTGGGGAATGGAGGCAAGTC
ACGGCGACGAGCGCAGGAAGGAGTATGACGGGTTCTTGGACTACGGTTCC
CCGCCCTCCCGCAAGCGCGGGAAGCTGCACTACTTTCGGGCTGGCGGCGA
CGATGTATTTCATCTCTCGGACTCCGAGTAGTCTGCCTTTCGCGGCACCG
GAGCTTGCGGGTGAGCTTTTGGAAATCGCTAACTTTTGTACTGCAATAGT
CCAATCGGGGAATCTCCAGTTCAACTACTTCCGTCTCTCGACTTGTAGGC
GATCAGTCTCTTTTCTCGTTGTCATAGTAAAGTTAGCCCCCGTAGACAGT
TGCCATCGGAACGCAAACACCTGTCCGCCATGCGGGCACGGGTTCCCTGC
TTATTTTGTTGCGCATATCGAAAGGCGTGTTGTCTAGCAGTTCCGACATT
CGCCAGAACCCACCTTTTACTGCTCGTGCACGCTTTTGCGCGTGTGGCAT
GGCGCATGTCGAGGAGCACAGATTCTCTTAGCCATCGTGCAAGGCGACTT
TGTAATATGTCGGAGCCGTTGGTGACACAGTAATCCTACCCCAATTATTT
TCCTGGTCTAAGTTCATCTCTTCCTCTACACCATTTTCTCGCTAAACCGT
CCATCATAATGTGCGGCCTTTCTTGTGCAAGGTCAGATGCTGTCGTGAAG
ACATCGAAGGTGCGCGCCGTATCGTATCAGCGTTGCGATTCGCTGAACCA
ATTGTCTTCAAACTCTGAAGTATTCGATGCTGGAGCGCGGTGTGCTCGTT
GGGTTATTTTGTTTCTTGCGCTGGGTGCGGTGGGGGTTGCTGCTCTTCTT
TCTTGGGACGATTCCACAAGTA
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Coding sequence (CDS) from alignment at C-linearis_contig80:160702..162973-

>mRNA_C-linearis_contig80.15850.1 ID=mRNA_C-linearis_contig80.15850.1|Name=mRNA_C-linearis_contig80.15850.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at C-linearis_contig80:160702..162973- (Chordaria linearis ClinC8C monoicous)
ATGATCGCCGAGCCTCGTGGAGGGGGCTCAGAGGGAGGCATGCCCAGACA
ACCGCGACAGGTCGGAGCTGGATCTCGATCGTGTGGTTTAACTCCGTCAA
GGCGCTCTTGGCACTGGCCGACGAGTGGTAGACAGTGTCTCCTGTTAAGC
GGCGGCAACGGGAGTGAAGACTCTTGTCTTCGCGAAGAGATGATCGCCGA
GCCTCGTGGAGGGGGCTCAGAGGGAGGCATGCCCAGACAACCGCGACAGG
TCGGAGCTGGATCTCGATCGTGTGGTTTAACTCCGTCAAGGCGCTCTTGG
CACTGGCCGACGAGTGGTAGACAGTGTCTCCTGTTAAGCGGCGGCAACGG
GAGTGAAGACTCTTGTCTTCGCGAAGAGGGTGTGAGAACGCTGCAAGAGT
GCGCTGGGAGCTGCCTCGGGCCCATCTTCGCCCCGGACACGATTAACTCC
ATCGCGGACTCCCACAGGCTGCTCAGGCGCTACGTCTTTACACCTTACCC
CGAAAGCGTCGACGACGCCAGCAGCGACGACGACCAAGATATGAACACCG
GTGCTGGCGGCGACGCGAGTACTCGGACGACGAGGACGGGCCCGTGGGGA
ATGGAGGCAAGTCACGGCGACGAGCGCAGGAAGGAGTATGACGGGTTCTT
GGACTACGGTTCCCCGCCCTCCCGCAAGCGCGGGAAGCTGCACTACTTTC
GGGCTGGCGGCGACGATGTATTTCATCTCTCGGACTCCGAGTAGGGTGTG
AGAACGCTGCAAGAGTGCGCTGGGAGCTGCCTCGGGCCCATCTTCGCCCC
GGACACGATTAACTCCATCGCGGACTCCCACAGGCTGCTCAGGCGCTACG
TCTTTACACCTTACCCCGAAAGCGTCGACGACGCCAGCAGCGACGACGAC
CAAGATATGAACACCGGTGCTGGCGGCGACGCGAGTACTCGGACGACGAG
GACGGGCCCGTGGGGAATGGAGGCAAGTCACGGCGACGAGCGCAGGAAGG
AGTATGACGGGTTCTTGGACTACGGTTCCCCGCCCTCCCGCAAGCGCGGG
AAGCTGCACTACTTTCGGGCTGGCGGCGACGATGTATTTCATCTCTCGGA
CTCCGAGTAG
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