mRNA_C-linearis_contig8.15804.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15804.1
Unique NamemRNA_C-linearis_contig8.15804.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 4.390e-139
Identity = 232/261 (88.89%), Postives = 239/261 (91.57%), Query Frame = 2
Query:  227 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYL +T P+KLD LMPEFVRDNAGKAFEFMVEKVDEDRKAAGL TI+E FAAKSE KEML XXXXXXXXXXXXXXXX RAP GGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALT AGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGK+P NCIAVEDSGSGVGSASNAGVG +   +G S  P  + D H
Sbjct:    1 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLPDTTPDKLDGLMPEFVRDNAGKAFEFMVEKVDEDRKAAGLSTISEAFAAKSEPKEMLDXXXXXXXXXXXXXXXXLRAPDGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKKDTH 261          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA)

HSP 1 Score: 372 bits (956), Expect = 3.280e-123
Identity = 197/261 (75.48%), Postives = 210/261 (80.46%), Query Frame = 2
Query:  227 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            ME+A A   +SILFDFDGTIGDTETPAMEVAFWELAPYL +T P+KLD LMPEFVRDNAGKAFEFMVE VDE+RKAAG+ ++ EMFAAKSE + ML                  RAP GGE   LLIQQKTETVDALSKIAQPCNGV EVLAALT A V FCISTTSPKPRVPASITAC LDEYFP DKVHSGESDFDPPRFKPNPSVYLKAAETEGK+PVNCIAVEDSGSGVGSASNAGVG +   +G S  P  + D H
Sbjct:    1 MEQATANKDISILFDFDGTIGDTETPAMEVAFWELAPYLPDTTPDKLDNLMPEFVRDNAGKAFEFMVETVDEERKAAGMDSVEEMFAAKSEPQNMLDAVDPHRKKFGLKSFAELRAPEGGEAATLLIQQKTETVDALSKIAQPCNGVREVLAALTAATVPFCISTTSPKPRVPASITACGLDEYFPPDKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPVNCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKDTH 261          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA)

HSP 1 Score: 274 bits (701), Expect = 6.340e-85
Identity = 146/252 (57.94%), Postives = 172/252 (68.25%), Query Frame = 2
Query:  254 MSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            +++LFDFDGT+GDTETPAMEVAFWE APYL N  P  L   +PE++R+NAGKAFEFM+E  DEDRK AGL T  EM  AK E    +                  +         LL QQK ETV+ALSK+AQPC G+PE L  L   G+ FCISTTSPKPRVP SI++C LD +FPADKVHSGESDF PP+FKP P VYLKAA++EGK P +C+AVEDSGSGVGSA+NAGVG     +G S     + D H
Sbjct:   10 IAVLFDFDGTVGDTETPAMEVAFWEAAPYLPNIAPSDLITQLPEYIRNNAGKAFEFMMEATDEDRKKAGLDTAEEMRQAKREDPAAVEVIDGYRKKFGLPPLRECKYA------TLLEQQKLETVEALSKVAQPCPGIPETLDELVKMGIPFCISTTSPKPRVPVSISSCGLDHHFPADKVHSGESDFTPPKFKPAPDVYLKAAKSEGKPPHDCVAVEDSGSGVGSAANAGVGMIVGYVGASHIREDKKDSH 255          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 1.020e-78
Identity = 139/196 (70.92%), Postives = 146/196 (74.49%), Query Frame = 2
Query:  422 MVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            M++ VD  RK  GL T AE+                             RAP GGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALT AGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGK+P NCIAVEDSGSGVGSASNAGVG +   +G S  P  + D H
Sbjct:    1 MLDAVDPHRKKFGLKTFAEL-----------------------------RAPDGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKMDTH 167          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: C1MV72_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MV72_MICPC)

HSP 1 Score: 250 bits (639), Expect = 4.820e-75
Identity = 136/242 (56.20%), Postives = 162/242 (66.94%), Query Frame = 2
Query:  242 AFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEK-----LDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVG 952
            A D  ++LFDFDGT+GDTETPAMEVAFWELAPY              D+   +++RDNAGKAFEFMV+ V+EDRKAAGL +I E  A+  E    L                  R  G    +++L  QK ETVDALS  A PC+ VP VLA+L   G+ FCISTTS KPRVP S+ +C   EYFP +K+HSGESDFDPPRFKP+PSVYL AA++E  DP NC+AVEDS SGVGSA+NA VG
Sbjct:   48 ASDHTAVLFDFDGTLGDTETPAMEVAFWELAPYFPEAAKPDGASYLTDKTCADYIRDNAGKAFEFMVDVVEEDRKAAGLSSIEEARASAGEAPATLAVVDAGRAKFGLPPLAETRGLG----KDILTLQKDETVDALSVAAHPCDNVPGVLASLKAKGIPFCISTTSGKPRVPVSVVSCGYTEYFPPEKIHSGESDFDPPRFKPDPSVYLLAAKSEDADPKNCVAVEDSTSGVGSAANANVG 285          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6S9FK33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FK33_HETAK)

HSP 1 Score: 247 bits (631), Expect = 1.020e-73
Identity = 146/278 (52.52%), Postives = 180/278 (64.75%), Query Frame = 2
Query:  200 HKRTQKNTMMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPE---FVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKHVVGMV 1024
            H+ +  N MM  +KA    ++LFDFDGTIGDTETPAM++AFWELAPY V+   EK D ++P+   +V+DNAGKAFEFM+E  +E R AAGL ++AE   A+ +    +                       G   +LL QQK ETV+ LSK+A P  GV +VLA LT   V F I+TTSPKPRVP SIT+C  D YFPADKV SGESDFDPPRFKP+P+VYL AAE EG+ P  CIAVEDS SGVGSASNA +G     +G S  PA +   H   ++
Sbjct:   46 HRASHGNVMMMNSKA----TVLFDFDGTIGDTETPAMKIAFWELAPYFVSA--EK-DGVLPDETAYVQDNAGKAFEFMMEVCEEQRAAAGLPSLAE---ARGKENPAVMGAVDAARSALGLRTFPEILAQDGALPDLLAQQKEETVEGLSKVAGPNPGVADVLARLTADAVPFAIATTSPKPRVPVSITSCGFDAYFPADKVWSGESDFDPPRFKPDPAVYLLAAEKEGQVPSMCIAVEDSASGVGSASNAKMGLIVGYVGSSHIPAEKKASHAAELI 313          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A7S1SLQ6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLQ6_9CHLO)

HSP 1 Score: 242 bits (617), Expect = 1.080e-71
Identity = 135/246 (54.88%), Postives = 165/246 (67.07%), Query Frame = 2
Query:  218 NTMMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDE-LMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVG 952
            N ++  A A +  ++LFDFDGT+GDTETPAMEVAFWELAPY  N     L E  M EF+R+NAGKAFEFMV+K +E R   GL  + E+ AAKSE   +L                  R+ G  E E+ LIQQK +TV AL  IA  C GV E L +LT  G+ F I+TTS KPRVP S+ A  LD +F  +K+HSGESDFDPPRFKP+PSVYL AA++E  D  NC+AVEDS SGVGSA+N+G+G
Sbjct:   54 NRVLNSAVAVEAPTVLFDFDGTLGDTETPAMEVAFWELAPYFPNVKVSDLTEPYMLEFIRENAGKAFEFMVDKCNESRAEVGLPPLEEVRAAKSEDPTLLEFVDKARTRFGLETFATMRS-GDSEPEDFLIQQKNDTVLALKTIATSCPGVKETLKSLTDMGLKFAIATTSGKPRVPVSVIASGLDTWFSPEKIHSGESDFDPPRFKPDPSVYLLAAKSENADIGNCVAVEDSASGVGSAANSGIG 298          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A068B0R3_SACJA (Mannitol-1-phosphatase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A068B0R3_SACJA)

HSP 1 Score: 240 bits (613), Expect = 8.360e-71
Identity = 140/255 (54.90%), Postives = 168/255 (65.88%), Query Frame = 2
Query:  251 KMSILFDFDGTIGDTETPAMEVAFWELAPYLVN--TPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            ++++LFDFDGTIGDTETPAMEVA+WELAPY     T  E +D  M E+VR+NAGKAFEFM+E V+ DRK  GL  IA   A  +E  E++                  RA   G  +++L QQK ETVDALS +A+P  G+   L  L    + F I+TTSPKPRVPASI AC LD+YFPADKVHSGESDFDPPRFKP+PSVYLKAA+ EG  P  C+AVEDS SGVGSA  A +G     +G S   A    +H
Sbjct:   98 RVAVLFDFDGTIGDTETPAMEVAYWELAPYFPGAATGGELVD--MSEYVRNNAGKAFEFMLEVVEADRKEQGLPDIATARAESAENPEIMKVVDAERAKYGLKPLGDLRA--AGTLKDILTQQKEETVDALSVVARPVEGMVNALDELRARKLPFAIATTSPKPRVPASIHACGLDDYFPADKVHSGESDFDPPRFKPDPSVYLKAAQFEGALPPLCVAVEDSASGVGSAYAAEMGLIVGYVGASHISASRKSEH 348          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6H5KIT4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIT4_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.730e-69
Identity = 136/255 (53.33%), Postives = 168/255 (65.88%), Query Frame = 2
Query:  251 KMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDEL--MPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
            ++++LFDFDGTIGDTETPAMEVA+WELAPY       K  EL  + E+VR+NAGKAFEFM+E V+ DRKA GL  IA   A  +E  +++                  RA   G  +++L QQK ETVDALS +A+P  G+ + L  L    + F I+TTSPKPRVPAS+ AC LDEYFPADK+HSGESDFDPPRFKP+PSVYL+AA+ EG  P  C+AVEDS SGVGSA  A +G     +G S        +H
Sbjct:  101 RVAVLFDFDGTIGDTETPAMEVAYWELAPYFPEA--AKGGELTDLTEYVRNNAGKAFEFMLEVVEADRKAQGLPDIATARAEGAEDPKIMKVVDEARVKYGLKPLGELRA--AGTLKDILTQQKEETVDALSVVARPVEGMVDTLDELKARKIPFAIATTSPKPRVPASVHACGLDEYFPADKIHSGESDFDPPRFKPDPSVYLRAAQYEGVLPPICVAVEDSASGVGSAFAAEMGLIVGYVGASHISEERKTEH 351          
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A7S0SIL2_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIL2_9CHLO)

HSP 1 Score: 234 bits (596), Expect = 1.590e-68
Identity = 134/258 (51.94%), Postives = 163/258 (63.18%), Query Frame = 2
Query:  254 MSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLD-ELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKHVVGMV 1024
            ++ILFDFDGT+GDTETPAMEVAFWELAPY      E L    M  +VR+NAGKAFEFMVE V+ DRKAAGL  +  +     E  +++                  RA     K +LL  QK ETVDALS +A+PC  VPEVL  L   GV F I+TTS KPRVP S+ +C  + +FP + +HSGESDFDPPRFKP+P+VYL AAE     P NCIAVEDS SGVGSA+NAG+G     +G S   A   + H   ++
Sbjct:   59 IAILFDFDGTLGDTETPAMEVAFWELAPYFPEASVEYLSTSTMEAYVRNNAGKAFEFMVEVVEADRKAAGLPDVEAVRTGGGEDPDVVTHVDACRTLFGLPLLADTRAL----KVDLLTLQKDETVDALSVLAKPCAQVPEVLETLRTMGVPFSIATTSGKPRVPVSVISCGFEAFFPPEMIHSGESDFDPPRFKPDPAVYLLAAEKTNALPKNCIAVEDSTSGVGSAANAGLGMIVGYVGGSHISAENEEGHAATLM 312          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC90_ECTSI4.390e-13988.89Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A2Z4BXC0_SACJA3.280e-12375.48Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japoni... [more]
A0A835ZES5_9STRA6.340e-8557.94Haloacid dehalogenase-like hydrolase n=1 Tax=Tribo... [more]
A0A6H5KNB9_9PHAE1.020e-7870.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
C1MV72_MICPC4.820e-7556.20Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A6S9FK33_HETAK1.020e-7352.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1SLQ6_9CHLO1.080e-7154.88Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A068B0R3_SACJA8.360e-7154.90Mannitol-1-phosphatase n=1 Tax=Saccharina japonica... [more]
A0A6H5KIT4_9PHAE2.730e-6953.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0SIL2_9CHLO1.590e-6851.94Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3590846..3594808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.8
Seed ortholog evalue1e-113
Seed eggNOG ortholog2880.D8LC90
Hectar predicted targeting categoryother localisation
EggNOG OGs28KFC@1,2QSWC@2759
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-14_005660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1537
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15804.1prot_C-linearis_contig8.15804.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3591110..3594255 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930574.284579-UTR-C-linearis_contig8:3590845..35911091622930574.284579-UTR-C-linearis_contig8:3590845..3591109Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3590846..3591109 -
1690881140.179264-UTR-C-linearis_contig8:3590845..35911091690881140.179264-UTR-C-linearis_contig8:3590845..3591109Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3590846..3591109 -
1622930574.3999019-UTR-C-linearis_contig8:3594255..35942971622930574.3999019-UTR-C-linearis_contig8:3594255..3594297Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3594256..3594297 -
1690881140.2755232-UTR-C-linearis_contig8:3594255..35942971690881140.2755232-UTR-C-linearis_contig8:3594255..3594297Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3594256..3594297 -
1622930574.417721-UTR-C-linearis_contig8:3594627..35948081622930574.417721-UTR-C-linearis_contig8:3594627..3594808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3594628..3594808 -
1690881140.2840123-UTR-C-linearis_contig8:3594627..35948081690881140.2840123-UTR-C-linearis_contig8:3594627..3594808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3594628..3594808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930574.305274-CDS-C-linearis_contig8:3591109..35915891622930574.305274-CDS-C-linearis_contig8:3591109..3591589Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3591110..3591589 -
1690881140.1932979-CDS-C-linearis_contig8:3591109..35915891690881140.1932979-CDS-C-linearis_contig8:3591109..3591589Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3591110..3591589 -
1622930574.324415-CDS-C-linearis_contig8:3591898..35920181622930574.324415-CDS-C-linearis_contig8:3591898..3592018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3591899..3592018 -
1690881140.2095983-CDS-C-linearis_contig8:3591898..35920181690881140.2095983-CDS-C-linearis_contig8:3591898..3592018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3591899..3592018 -
1622930574.3434093-CDS-C-linearis_contig8:3592577..35927621622930574.3434093-CDS-C-linearis_contig8:3592577..3592762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3592578..3592762 -
1690881140.2275815-CDS-C-linearis_contig8:3592577..35927621690881140.2275815-CDS-C-linearis_contig8:3592577..3592762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3592578..3592762 -
1622930574.3613448-CDS-C-linearis_contig8:3593159..35932941622930574.3613448-CDS-C-linearis_contig8:3593159..3593294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3593160..3593294 -
1690881140.246939-CDS-C-linearis_contig8:3593159..35932941690881140.246939-CDS-C-linearis_contig8:3593159..3593294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3593160..3593294 -
1622930574.3807096-CDS-C-linearis_contig8:3594125..35942551622930574.3807096-CDS-C-linearis_contig8:3594125..3594255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3594126..3594255 -
1690881140.2664053-CDS-C-linearis_contig8:3594125..35942551690881140.2664053-CDS-C-linearis_contig8:3594125..3594255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3594126..3594255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15804.1

>prot_C-linearis_contig8.15804.1 ID=prot_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=350bp
MMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDE
LMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLDAV
DPHRKKFGLKTFAELRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPE
VLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDP
PRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLG
PSFYPARENDKHVVGMVVSFCGGVVQVTICLSPSCKEPPELEPCKSCFFF
FSSEALSRLPRQLRFPCVTTAQHRSVRASLPWNASSNEAGARSFTPKTL*
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mRNA from alignment at C-linearis_contig8:3590846..3594808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15804.1 ID=mRNA_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3963bp|location=Sequence derived from alignment at C-linearis_contig8:3590846..3594808- (Chordaria linearis ClinC8C monoicous)
CTAGGCTTGTGTGCCGGCGAGTCCTGGATTCTTTTCCTGGACTCTTTCTC TGCTTCCGTTGCACGAGACTGTCAAATTCGGGTGTGGGTACCCGGGCCAG ACCGCATCTGCAGCCCCAAAATCACCCTTTTGTCTCTCCGATCTCGACAC ACACACTGCCTCTCCCCCCCTTGCCCCCCAGGTGAGTTATAGGTTAGCCA CCGCGGAGGAGGAGACCGGTGGGTCCTGGTTTTTGTGCTCCCTGACTTCG TGATGAAGCCCCACCCTCTGCGCACGTCACTTTTCATGTGGCAGCAGCAG ATGGTGTAGACTACGCATGTTGCAGTTGGACAGCCACGCCACATGAATGT TGCCGCATGTTCCAGTTCGTCGACCTTGTTTCCGGGCCAGCTGTTCTCGA CGCGGTCTCGTGCTGCCCTTGCCCGCGTCGAACTTACACACAACAGCTGC CCCTCGTTTTCCCCGCTCGCTATCCTCTCTCCGTGTGAACTTGATCTGCC TTTTGGGGCAGATCTTCAACGCAAACAAACACAAAAGAACACAAAAGAAC ACCATGATGGAGAAAGCGAAGGCCTTTGACAAGATGTCCATCCTCTTCGA CTTCGACGGCACCATTGGGGACACCGAGACCCCCGCAATGGAGGTGGCCT TCTGGGAATTAGCCCCGTACTTGGTCAACACGCGTGAGTCAAGGTCCCGT ACGCCTCAAGCCTGGGGTGCGACCTACCGTATGTAGCGCACCCTGCAGAC CACCTGAGAGTTTTCGCCCCTGTTCCTCTCTGAAGAAGGGCACTACAGGA CAAACAAACGATCACCTGCCGAGTGGGTAGAGTGGGTGGATGCGGAATGC AGTTTTATTTTGTCCATTTCTCCGCTCTAGGACCATGTGTGTACTCCGGG GAGAATATCAGATTTTGGCACGATGTGCGCGACGACTAAAAAAACAGGAC ACACATCGAATCTCTCCCACGAATCTACAGGACCTGTCCTCAGTTCGTAA CCCAAGGGGGGCGCGAGAAGGGTAGTACAGGAAGGTTTTAGGCGTGCCGT GTTCCTCGACAATCTGCACTTTGCTCAAAGATACCTGCACCACCGTTAAT CTATGAACTTCGCACAAAAGTAGCACTATGAACGAGTGTAATTCCCGTCC CAGAAGGAGGTTGCCGTGTGCGAGAGTACTTGCTGTACTTTCCTTCCAAA GATGAAACCCGATTGGAAAAACAACAAATCCTGCCCAGATGGCTCACCTC GCGCGAGCACGCGTGGGAAGATAAGATTTGCATGTCCTTCCACCGTGCTC ACACCCGATCTAATTGGACTACAAGCTCGTGCAGATTTTGATGGATCGAA AAGCTCAAGAGTCACGAGCATCAGTGCCCGCGCGGAGATATGTCTTTCCT TCGTTCCTACACTACGGACAGAGTTAGACTGCGTGCTGAGAAGTTAAATC GGTCGTTATCCCTCCAAGCTGCATCTTGACCTGCCGACACCTGACATGCC ACCCATACACGCAGCCCCGGAGAAGCTGGACGAACTGATGCCCGAATTCG TGCGCGACAACGCCGGGAAGGCGTTCGAGTTCATGGTCGAGAAGGTGGAC GAGGATCGCAAGGCTGCGGGGCTGGGCACCATCGCGGAGATGTTCGCCGG TGAGATGGCTGCGATAAGTTTAAGGCAACAAGGAGCCACACACGTGTGTC GCACCTCTTCGGTTGTGTGTTAGGCCTGCGCCTTTGACGACAACATGAGC TTTTTCTCGAAAGGGGGAGTTTTAGCCGGAACTAGAAGAGGAAATAGGAA TTAGTTTGCTGGCGCTGGAACCATATGTTGTACAAAACGCAACCACACAC ACGATGCCCTATTTTGAGACTGGCGTCTTACCATCGGCTAGCCGAGAATC GCGGTCCGTCACAAAAGCAACACAAAAGGGACAAAACGATACACCACCCC GGTCTTAGTCTGTGGAGCTGCGCTTCCCTCCTGACCTTCGCTTCCCTTCC CGAACCTAAATCGCTTTGTTCTTGTACCTATTCCGCGTGCGAACAGCCAA GTCCGAGCTGAAGGAGATGCTCGACGCCGTCGACCCCCACCGTAAAAAAT TCGGGCTCAAGACCTTCGCCGAGCTGCGCGCCCCGGGCGGCGGTGAGAAG GAGAACCTGCTGATCCAGCAAAAGACGGAGACCGTGGACGCGCTCAGCAA GATCGCGCAGCCGTGCAACGGGGTCCCGGAGGTGCGCGTGGGTGTGTGTG ACGTTTGCAGCTGGGCAGTGGCACAGGTGCGGCGGTGGCGGGTGTCGAAG GAAAATCCACCCCAAACCCTGCTGCGTAGCTTCCCTAGTCTCTGGCCCGT GTGTTGGCTTTGGTTGGACGTGGCGTGGAGGATATTTCACTTTATCGAGT AGATATCTACCAGCTAGCCTCCTGGTCTTTCGTCTTGTTTTGCTTTGTAG GTTTGCAGTTCGTCTTTCTGTGTGTGTTCATGCCATATAGCACACCTGGG TTTTTTCACGGCTAGTCCGTTTTCGTTCGCGCCTGTGGCTCTCTCGGCCC TTTAGTATGAGTATTGAGGGGGCGCCAATGTATTTGTCGTTCATGACTCC ATGGTAGCACTGGTTTGACGCACACTTCGACATCAACTGGCACTGCATGC GGCCTGTACACGGCCCCTTGCACACTCTCCATGTAGGCAATATCGCGCCA ACGGCCGCACACATGGGAGTGTATCAAGGTTAGCTCTTGCTGCTGCGTCG CCCCTCTCACAACCGTGCGTCAACCGCAACGGGCGTTCAGGTGTTGGCAG CTCTGACCGTCGCTGGCGTGGCGTTCTGCATCTCCACGACCAGCCCCAAG CCGAGAGTTCCGGCGTCCATCACGGCATGCAAGCTCGACGAATACTTCCC GGCTGACAAGGTTGGGGTTGAGTTCGGTGCTGTCCTCGTTTCTCTTTTGG GGGGGGGGGAGCGAGGGTGGCTCGTTTTGGTGCTGAGGTTCGTTGACAGC TGCAGTTGTTGCTGCCGTTGTTGTTGCTCTTGCTGCCAAGAAAACGTGAA AAATCAGGTTCGTGGAGTACATACATACCGGTACATGCTAACCAAATGCC CGCTCCCCTTGAGGCAGTGTGCACGCACAGCAGTAGAGAGGAAACCCACC TCCGACCCTCCCTTCTCGCCGACTCTCGCCCCCCCCAAAACCCCAAACGT CAACAACGCTCGAGAAAAGGTGCACAGCGGAGAGAGCGACTTCGACCCCC CGCGGTTCAAGCCCAACCCGTCGGTGTACCTCAAGGCCGCCGAGACCGAG GGCAAGGACCCCGTGAACTGCATCGCGGTGGAGGACAGCGGGTCCGGCGT GGGCTCCGCTTCGAACGCGGGCGTCGGTGAGTCTTCTTCTGATCTCGGTC CTTCCTTCTATCCCGCAAGAGAGAACGACAAGCACGTCGTTGGAATGGTT GTTTCGTTTTGCGGTGGAGTTGTCCAAGTTACGATTTGTCTTTCCCCTTC GTGCAAAGAACCGCCGGAGCTTGAGCCCTGTAAGAGCTGTTTTTTTTTTT TCTCTTCCGAAGCTTTGAGCAGGTTGCCGCGGCAGCTCCGCTTCCCGTGT GTTACGACGGCACAACACCGCAGTGTGCGTGCATCGTTGCCTTGGAACGC TTCGTCCAACGAAGCGGGGGCGCGAAGCTTCACGCCCAAAACCCTGTAAT TTCTACTGTGCGTGAGAAATGTAGGCTGTTGTACTCTATTATCATTAGGA AGACATTGTTTTGGCGGTTGTCTTTTTACCCTCTGCAGCCGGTATCGCCC GGGTGCCGCAGAGGCGTAGGTGATCGGGTAGTGGCTTTTCTATCAGTATT AAACATGGAGCATTTGTTCCGGGTTGTATTGAAAGCGTCAAGCAGGCGGC TCCACCCGTGTCCGTCCAATCTGCCCCCTTCTCTTTCCTTTCCTTTCCTT CCCTTGCCCCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig8:3590846..3594808-

>mRNA_C-linearis_contig8.15804.1 ID=mRNA_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at C-linearis_contig8:3590846..3594808- (Chordaria linearis ClinC8C monoicous)
ATGATGGAGAAAGCGAAGGCCTTTGACAAGATGTCCATCCTCTTCGACTT
CGACGGCACCATTGGGGACACCGAGACCCCCGCAATGGAGGTGGCCTTCT
GGGAATTAGCCCCGTACTTGGTCAACACGCATGATGGAGAAAGCGAAGGC
CTTTGACAAGATGTCCATCCTCTTCGACTTCGACGGCACCATTGGGGACA
CCGAGACCCCCGCAATGGAGGTGGCCTTCTGGGAATTAGCCCCGTACTTG
GTCAACACGCCCCCGGAGAAGCTGGACGAACTGATGCCCGAATTCGTGCG
CGACAACGCCGGGAAGGCGTTCGAGTTCATGGTCGAGAAGGTGGACGAGG
ATCGCAAGGCTGCGGGGCTGGGCACCATCGCGGAGATGTTCGCCGCCCCG
GAGAAGCTGGACGAACTGATGCCCGAATTCGTGCGCGACAACGCCGGGAA
GGCGTTCGAGTTCATGGTCGAGAAGGTGGACGAGGATCGCAAGGCTGCGG
GGCTGGGCACCATCGCGGAGATGTTCGCCGCCAAGTCCGAGCTGAAGGAG
ATGCTCGACGCCGTCGACCCCCACCGTAAAAAATTCGGGCTCAAGACCTT
CGCCGAGCTGCGCGCCCCGGGCGGCGGTGAGAAGGAGAACCTGCTGATCC
AGCAAAAGACGGAGACCGTGGACGCGCTCAGCAAGATCGCGCAGCCGTGC
AACGGGGTCCCGGAGCCAAGTCCGAGCTGAAGGAGATGCTCGACGCCGTC
GACCCCCACCGTAAAAAATTCGGGCTCAAGACCTTCGCCGAGCTGCGCGC
CCCGGGCGGCGGTGAGAAGGAGAACCTGCTGATCCAGCAAAAGACGGAGA
CCGTGGACGCGCTCAGCAAGATCGCGCAGCCGTGCAACGGGGTCCCGGAG
GTGTTGGCAGCTCTGACCGTCGCTGGCGTGGCGTTCTGCATCTCCACGAC
CAGCCCCAAGCCGAGAGTTCCGGCGTCCATCACGGCATGCAAGCTCGACG
AATACTTCCCGGCTGACAAGGTGTTGGCAGCTCTGACCGTCGCTGGCGTG
GCGTTCTGCATCTCCACGACCAGCCCCAAGCCGAGAGTTCCGGCGTCCAT
CACGGCATGCAAGCTCGACGAATACTTCCCGGCTGACAAGGTGCACAGCG
GAGAGAGCGACTTCGACCCCCCGCGGTTCAAGCCCAACCCGTCGGTGTAC
CTCAAGGCCGCCGAGACCGAGGGCAAGGACCCCGTGAACTGCATCGCGGT
GGAGGACAGCGGGTCCGGCGTGGGCTCCGCTTCGAACGCGGGCGTCGGTG
AGTCTTCTTCTGATCTCGGTCCTTCCTTCTATCCCGCAAGAGAGAACGAC
AAGCACGTCGTTGGAATGGTTGTTTCGTTTTGCGGTGGAGTTGTCCAAGT
TACGATTTGTCTTTCCCCTTCGTGCAAAGAACCGCCGGAGCTTGAGCCCT
GTAAGAGCTGTTTTTTTTTTTTCTCTTCCGAAGCTTTGAGCAGGTTGCCG
CGGCAGCTCCGCTTCCCGTGTGTTACGACGGCACAACACCGCAGTGTGCG
TGCATCGTTGCCTTGGAACGCTTCGTCCAACGAAGCGGGGGCGCGAAGCT
TCACGCCCAAAACCCTGTAAGTGCACAGCGGAGAGAGCGACTTCGACCCC
CCGCGGTTCAAGCCCAACCCGTCGGTGTACCTCAAGGCCGCCGAGACCGA
GGGCAAGGACCCCGTGAACTGCATCGCGGTGGAGGACAGCGGGTCCGGCG
TGGGCTCCGCTTCGAACGCGGGCGTCGGTGAGTCTTCTTCTGATCTCGGT
CCTTCCTTCTATCCCGCAAGAGAGAACGACAAGCACGTCGTTGGAATGGT
TGTTTCGTTTTGCGGTGGAGTTGTCCAAGTTACGATTTGTCTTTCCCCTT
CGTGCAAAGAACCGCCGGAGCTTGAGCCCTGTAAGAGCTGTTTTTTTTTT
TTCTCTTCCGAAGCTTTGAGCAGGTTGCCGCGGCAGCTCCGCTTCCCGTG
TGTTACGACGGCACAACACCGCAGTGTGCGTGCATCGTTGCCTTGGAACG
CTTCGTCCAACGAAGCGGGGGCGCGAAGCTTCACGCCCAAAACCCTGTAA
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