mRNA_C-linearis_contig8.15804.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 4.390e-139 Identity = 232/261 (88.89%), Postives = 239/261 (91.57%), Query Frame = 2
Query: 227 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYL +T P+KLD LMPEFVRDNAGKAFEFMVEKVDEDRKAAGL TI+E FAAKSE KEML XXXXXXXXXXXXXXXX RAP GGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALT AGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGK+P NCIAVEDSGSGVGSASNAGVG + +G S P + D H
Sbjct: 1 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLPDTTPDKLDGLMPEFVRDNAGKAFEFMVEKVDEDRKAAGLSTISEAFAAKSEPKEMLDXXXXXXXXXXXXXXXXLRAPDGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKKDTH 261
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA) HSP 1 Score: 372 bits (956), Expect = 3.280e-123 Identity = 197/261 (75.48%), Postives = 210/261 (80.46%), Query Frame = 2
Query: 227 MEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
ME+A A +SILFDFDGTIGDTETPAMEVAFWELAPYL +T P+KLD LMPEFVRDNAGKAFEFMVE VDE+RKAAG+ ++ EMFAAKSE + ML RAP GGE LLIQQKTETVDALSKIAQPCNGV EVLAALT A V FCISTTSPKPRVPASITAC LDEYFP DKVHSGESDFDPPRFKPNPSVYLKAAETEGK+PVNCIAVEDSGSGVGSASNAGVG + +G S P + D H
Sbjct: 1 MEQATANKDISILFDFDGTIGDTETPAMEVAFWELAPYLPDTTPDKLDNLMPEFVRDNAGKAFEFMVETVDEERKAAGMDSVEEMFAAKSEPQNMLDAVDPHRKKFGLKSFAELRAPEGGEAATLLIQQKTETVDALSKIAQPCNGVREVLAALTAATVPFCISTTSPKPRVPASITACGLDEYFPPDKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPVNCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPEYKKDTH 261
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA) HSP 1 Score: 274 bits (701), Expect = 6.340e-85 Identity = 146/252 (57.94%), Postives = 172/252 (68.25%), Query Frame = 2
Query: 254 MSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
+++LFDFDGT+GDTETPAMEVAFWE APYL N P L +PE++R+NAGKAFEFM+E DEDRK AGL T EM AK E + + LL QQK ETV+ALSK+AQPC G+PE L L G+ FCISTTSPKPRVP SI++C LD +FPADKVHSGESDF PP+FKP P VYLKAA++EGK P +C+AVEDSGSGVGSA+NAGVG +G S + D H
Sbjct: 10 IAVLFDFDGTVGDTETPAMEVAFWEAAPYLPNIAPSDLITQLPEYIRNNAGKAFEFMMEATDEDRKKAGLDTAEEMRQAKREDPAAVEVIDGYRKKFGLPPLRECKYA------TLLEQQKLETVEALSKVAQPCPGIPETLDELVKMGIPFCISTTSPKPRVPVSISSCGLDHHFPADKVHSGESDFTPPKFKPAPDVYLKAAKSEGKPPHDCVAVEDSGSGVGSAANAGVGMIVGYVGASHIREDKKDSH 255
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.020e-78 Identity = 139/196 (70.92%), Postives = 146/196 (74.49%), Query Frame = 2
Query: 422 MVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
M++ VD RK GL T AE+ RAP GGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALT AGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGK+P NCIAVEDSGSGVGSASNAGVG + +G S P + D H
Sbjct: 1 MLDAVDPHRKKFGLKTFAEL-----------------------------RAPDGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKEPANCIAVEDSGSGVGSASNAGVGLTVGYVGASHIPDYKMDTH 167
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: C1MV72_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MV72_MICPC) HSP 1 Score: 250 bits (639), Expect = 4.820e-75 Identity = 136/242 (56.20%), Postives = 162/242 (66.94%), Query Frame = 2
Query: 242 AFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEK-----LDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVG 952
A D ++LFDFDGT+GDTETPAMEVAFWELAPY D+ +++RDNAGKAFEFMV+ V+EDRKAAGL +I E A+ E L R G +++L QK ETVDALS A PC+ VP VLA+L G+ FCISTTS KPRVP S+ +C EYFP +K+HSGESDFDPPRFKP+PSVYL AA++E DP NC+AVEDS SGVGSA+NA VG
Sbjct: 48 ASDHTAVLFDFDGTLGDTETPAMEVAFWELAPYFPEAAKPDGASYLTDKTCADYIRDNAGKAFEFMVDVVEEDRKAAGLSSIEEARASAGEAPATLAVVDAGRAKFGLPPLAETRGLG----KDILTLQKDETVDALSVAAHPCDNVPGVLASLKAKGIPFCISTTSGKPRVPVSVVSCGYTEYFPPEKIHSGESDFDPPRFKPDPSVYLLAAKSEDADPKNCVAVEDSTSGVGSAANANVG 285
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6S9FK33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FK33_HETAK) HSP 1 Score: 247 bits (631), Expect = 1.020e-73 Identity = 146/278 (52.52%), Postives = 180/278 (64.75%), Query Frame = 2
Query: 200 HKRTQKNTMMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDELMPE---FVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKHVVGMV 1024
H+ + N MM +KA ++LFDFDGTIGDTETPAM++AFWELAPY V+ EK D ++P+ +V+DNAGKAFEFM+E +E R AAGL ++AE A+ + + G +LL QQK ETV+ LSK+A P GV +VLA LT V F I+TTSPKPRVP SIT+C D YFPADKV SGESDFDPPRFKP+P+VYL AAE EG+ P CIAVEDS SGVGSASNA +G +G S PA + H ++
Sbjct: 46 HRASHGNVMMMNSKA----TVLFDFDGTIGDTETPAMKIAFWELAPYFVSA--EK-DGVLPDETAYVQDNAGKAFEFMMEVCEEQRAAAGLPSLAE---ARGKENPAVMGAVDAARSALGLRTFPEILAQDGALPDLLAQQKEETVEGLSKVAGPNPGVADVLARLTADAVPFAIATTSPKPRVPVSITSCGFDAYFPADKVWSGESDFDPPRFKPDPAVYLLAAEKEGQVPSMCIAVEDSASGVGSASNAKMGLIVGYVGSSHIPAEKKASHAAELI 313
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A7S1SLQ6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLQ6_9CHLO) HSP 1 Score: 242 bits (617), Expect = 1.080e-71 Identity = 135/246 (54.88%), Postives = 165/246 (67.07%), Query Frame = 2
Query: 218 NTMMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDE-LMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVG 952
N ++ A A + ++LFDFDGT+GDTETPAMEVAFWELAPY N L E M EF+R+NAGKAFEFMV+K +E R GL + E+ AAKSE +L R+ G E E+ LIQQK +TV AL IA C GV E L +LT G+ F I+TTS KPRVP S+ A LD +F +K+HSGESDFDPPRFKP+PSVYL AA++E D NC+AVEDS SGVGSA+N+G+G
Sbjct: 54 NRVLNSAVAVEAPTVLFDFDGTLGDTETPAMEVAFWELAPYFPNVKVSDLTEPYMLEFIRENAGKAFEFMVDKCNESRAEVGLPPLEEVRAAKSEDPTLLEFVDKARTRFGLETFATMRS-GDSEPEDFLIQQKNDTVLALKTIATSCPGVKETLKSLTDMGLKFAIATTSGKPRVPVSVIASGLDTWFSPEKIHSGESDFDPPRFKPDPSVYLLAAKSENADIGNCVAVEDSASGVGSAANSGIG 298
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A068B0R3_SACJA (Mannitol-1-phosphatase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A068B0R3_SACJA) HSP 1 Score: 240 bits (613), Expect = 8.360e-71 Identity = 140/255 (54.90%), Postives = 168/255 (65.88%), Query Frame = 2
Query: 251 KMSILFDFDGTIGDTETPAMEVAFWELAPYLVN--TPPEKLDELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
++++LFDFDGTIGDTETPAMEVA+WELAPY T E +D M E+VR+NAGKAFEFM+E V+ DRK GL IA A +E E++ RA G +++L QQK ETVDALS +A+P G+ L L + F I+TTSPKPRVPASI AC LD+YFPADKVHSGESDFDPPRFKP+PSVYLKAA+ EG P C+AVEDS SGVGSA A +G +G S A +H
Sbjct: 98 RVAVLFDFDGTIGDTETPAMEVAYWELAPYFPGAATGGELVD--MSEYVRNNAGKAFEFMLEVVEADRKEQGLPDIATARAESAENPEIMKVVDAERAKYGLKPLGDLRA--AGTLKDILTQQKEETVDALSVVARPVEGMVNALDELRARKLPFAIATTSPKPRVPASIHACGLDDYFPADKVHSGESDFDPPRFKPDPSVYLKAAQFEGALPPLCVAVEDSASGVGSAYAAEMGLIVGYVGASHISASRKSEH 348
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A6H5KIT4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIT4_9PHAE) HSP 1 Score: 236 bits (603), Expect = 2.730e-69 Identity = 136/255 (53.33%), Postives = 168/255 (65.88%), Query Frame = 2
Query: 251 KMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDEL--MPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKH 1009
++++LFDFDGTIGDTETPAMEVA+WELAPY K EL + E+VR+NAGKAFEFM+E V+ DRKA GL IA A +E +++ RA G +++L QQK ETVDALS +A+P G+ + L L + F I+TTSPKPRVPAS+ AC LDEYFPADK+HSGESDFDPPRFKP+PSVYL+AA+ EG P C+AVEDS SGVGSA A +G +G S +H
Sbjct: 101 RVAVLFDFDGTIGDTETPAMEVAYWELAPYFPEA--AKGGELTDLTEYVRNNAGKAFEFMLEVVEADRKAQGLPDIATARAEGAEDPKIMKVVDEARVKYGLKPLGELRA--AGTLKDILTQQKEETVDALSVVARPVEGMVDTLDELKARKIPFAIATTSPKPRVPASVHACGLDEYFPADKIHSGESDFDPPRFKPDPSVYLRAAQYEGVLPPICVAVEDSASGVGSAFAAEMGLIVGYVGASHISEERKTEH 351
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Match: A0A7S0SIL2_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SIL2_9CHLO) HSP 1 Score: 234 bits (596), Expect = 1.590e-68 Identity = 134/258 (51.94%), Postives = 163/258 (63.18%), Query Frame = 2
Query: 254 MSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLD-ELMPEFVRDNAGKAFEFMVEKVDEDRKAAGLGTIAEMFAAKSELKEMLXXXXXXXXXXXXXXXXXXRAPGGGEKENLLIQQKTETVDALSKIAQPCNGVPEVLAALTVAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAAETEGKDPVNCIAVEDSGSGVGSASNAGVGESSSDLGPSFYPARENDKHVVGMV 1024
++ILFDFDGT+GDTETPAMEVAFWELAPY E L M +VR+NAGKAFEFMVE V+ DRKAAGL + + E +++ RA K +LL QK ETVDALS +A+PC VPEVL L GV F I+TTS KPRVP S+ +C + +FP + +HSGESDFDPPRFKP+P+VYL AAE P NCIAVEDS SGVGSA+NAG+G +G S A + H ++
Sbjct: 59 IAILFDFDGTLGDTETPAMEVAFWELAPYFPEASVEYLSTSTMEAYVRNNAGKAFEFMVEVVEADRKAAGLPDVEAVRTGGGEDPDVVTHVDACRTLFGLPLLADTRAL----KVDLLTLQKDETVDALSVLAKPCAQVPEVLETLRTMGVPFSIATTSGKPRVPVSVISCGFEAFFPPEMIHSGESDFDPPRFKPDPAVYLLAAEKTNALPKNCIAVEDSTSGVGSAANAGLGMIVGYVGGSHISAENEEGHAATLM 312 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15804.1 >prot_C-linearis_contig8.15804.1 ID=prot_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=350bp MMEKAKAFDKMSILFDFDGTIGDTETPAMEVAFWELAPYLVNTPPEKLDEback to top mRNA from alignment at C-linearis_contig8:3590846..3594808- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15804.1 ID=mRNA_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3963bp|location=Sequence derived from alignment at C-linearis_contig8:3590846..3594808- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3590846..3594808- >mRNA_C-linearis_contig8.15804.1 ID=mRNA_C-linearis_contig8.15804.1|Name=mRNA_C-linearis_contig8.15804.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at C-linearis_contig8:3590846..3594808- (Chordaria linearis ClinC8C monoicous)back to top |