mRNA_C-linearis_contig8.15801.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15801.1
Unique NamemRNA_C-linearis_contig8.15801.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5JI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI64_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 1.190e-122
Identity = 230/361 (63.71%), Postives = 253/361 (70.08%), Query Frame = 2
Query:  779 NIHSTQRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGR--HSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGL--QYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTA 1849
            +IHSTQRVEST   LK  MERSGT+VDVH A+VGKV  DA KSKRQ  GGTVHRVRQP +S  D V    L GFDFVREGMRHAQCSA AM+ MSTEAL A  Y+      G+G V    +  L    SNPASA LCYDP SGG DGTWTTRTSVKFFADLLEG QVV L  + + + P P     G P       L P        LRLLVDGLGCRH LR MRE++FGLNGGC+APRWRDGT P T+A LAAKRAVPSN  A LP A+PPAP DPG FSHSKPTARASNWASC A  KE+ASLMTEV+++APCQRVLDN      L NHAKQLIEVE     E ++ R   GV A+ TA
Sbjct:  245 SIHSTQRVESTINVLKMTMERSGTLVDVHDAIVGKVKDDATKSKRQADGGTVHRVRQPNASAVDTVTDGWLRGFDFVREGMRHAQCSAVAMKDMSTEALGAMGYKVHILARGDGNV----RRELANMVSNPASAGLCYDPASGGGDGTWTTRTSVKFFADLLEG-QVVDLLVRITRSYPDPD----GGPDYCHLVALGPDGFVLCTCLRLLVDGLGCRHDLRAMRETDFGLNGGCLAPRWRDGTKPWTLAHLAAKRAVPSNSSAGLPGAVPPAPTDPGAFSHSKPTARASNWASCVAFGKEIASLMTEVNSVAPCQRVLDN------LRNHAKQLIEVE----SELASGRGRPGVAAKETA 586          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KFX3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX3_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 5.360e-109
Identity = 208/370 (56.22%), Postives = 243/370 (65.68%), Query Frame = 2
Query:  794 QRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPG 1894
            +RVES NGALKTAM RSG++VDVH  +VGKV      + R           Q  +SP + V  S L GFD+VR  MRH +CSA+AM+ MSTEALAA AY       G         +    S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE     ++V +  S +  GP+   +          L P        LRLLV GLGCRH LR +R+++FG NGGCIA RWRD T P T+  LAAKRA P+N  A +P  +PPAP DPGVFSHSKPTAR SNWASC A  KE+ASLMT+VD +APCQRVL+N      L N+AKQLIEVE RSQHEA+T+RIF GVVARP  ATDPPEG  VGAGPG
Sbjct:  229 KRVESINGALKTAMHRSGSMVDVHDTIVGKVQXPWLPACRT----------QQAASPLETVTNSWLEGFDYVRRAMRHVECSAYAMKDMSTEALAAMAYDVEILTTGNEDV--HREIARIVSDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGDMPPAPTDPGVFSHSKPTARVSNWASCVAFGKELASLMTDVDAVAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAGPG 572          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5JYV9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV9_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.860e-97
Identity = 190/332 (57.23%), Postives = 220/332 (66.27%), Query Frame = 2
Query:  911 RQTSGGT--VHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGP 1891
            RQ   GT  +  V    +SP + V  S L GFD+VR  MRH +CSA+AM+ MSTEALAA AY     G G         +    S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE     ++V +  S +  GP+   +          L P        LRLLV GLGCRH LR +R+++FGLNGGCIA RWRD T P T+  L AKRA P+N  A +P  +PPAP DPGVFSHSKPTARASNWASC A  KE+ASLMT+VD IAPCQRVL+N      L N+AKQLIEVE RSQHEA+T+RIF GVVARP  ATDPPEG  VGAGP
Sbjct:  307 RQAVSGTAALQTVMPKAASPLETVTNSWLEGFDYVRRAMRHVECSAYAMKDMSTEALAAMAYDVEILGTG--NDDVHREIARMVSDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLLVYGLGCRHGLRAVRDTDFGLNGGCIASRWRDSTQPWTMEHLTAKRAAPANTAAGVPGDMPPAPMDPGVFSHSKPTARASNWASCVAFGKELASLMTDVDAIAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAGP 622          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 1.660e-88
Identity = 190/384 (49.48%), Postives = 231/384 (60.16%), Query Frame = 2
Query:  773 TFNIHSTQRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPS--NIGAELPRALPPAPADPGVFS---HSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPGGGRGR 1909
            T  I STQRVESTNGALK AM R+GT+VDVH A+ GKV+ D NK+K QT+GG + RVR PT S F  V+ S L  F FV +GM HA CSAFAM+ MS EALAA  Y       G         L  + +NP  A L Y+   G  D T  TRTS++FFA+LL+  QV+      +     +T+           L P        LR+LVDGLGCRHALR MR ++ G  G CIAPRWRDG MP T+  LAAK AV +  + G E+P    P PAD   FS   HSK T RAS WASC A  KE+A++   +D +A   R+LDN      L  HA+QL++VE+RSQH AST+R+FKGVV R T A DPPEG  VG  P G  G+
Sbjct:  139 TLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKTKTQTTGGPIQRVRVPTQSSFGDVRDSWLADFKFVHDGMLHAGCSAFAMKDMSDEALAAVGYSAETLATG--NDDVHRLLTDFVANPPQAGLLYETDVG--DVTLATRTSIEFFAELLKD-QVLDRLVRVSRSFGDQTKY-----CQLVALGPDGFFLCTCLRILVDGLGCRHALRAMRGTDLGFTGACIAPRWRDGIMPWTMGRLAAKPAVAATTDAGGEMP----PPPADASAFSRFSHSKSTVRASAWASCCAWGKELATITAPIDNVAGITRILDN------LTIHARQLVDVELRSQHNASTTRVFKGVVTRSTPAPDPPEGGGVGMTPSGDSGK 502          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KN91_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN91_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 1.560e-85
Identity = 162/254 (63.78%), Postives = 179/254 (70.47%), Query Frame = 2
Query: 1157 SNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQV-VGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAGPGGGRGRGN 1915
            SNPASA  CYDPT GG DGTWTTRTSVKFF D++EG  V + ++ + + P P+    G P+      L P        LR LVDGL CRHA   MRE +FG N GCIAPRWRD  M  T+A LAAKRAVPSN  A LP ALP APADPGVFSHSKPTARASNW+SC A  KEVASLMT  D++APCQRVL N      L+NHAKQLI+VEV SQHE STSRIFKGVVARPT  TDPPE  D    PG GR RG+
Sbjct:   24 SNPASAGWCYDPTYGGGDGTWTTRTSVKFFVDMVEGHDVDLLVRITTSFPNPA----GGPAYGHLVALGPDGFVLCTCLRFLVDGLCCRHAFLAMREMDFGFNPGCIAPRWRDEEMSWTLAPLAAKRAVPSNTSAGLPGALPQAPADPGVFSHSKPTARASNWSSCLAFGKEVASLMTAFDSVAPCQRVLGN------LMNHAKQLIDVEVASQHETSTSRIFKGVVARPTTTTDPPEEDDARTAPGSGRTRGS 267          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KQR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR1_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.510e-80
Identity = 153/268 (57.09%), Postives = 170/268 (63.43%), Query Frame = 2
Query:  857 DVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKASLPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAAS 1660
            DVH A+VGKV  DANKSKR+T+ G V RVRQPT++PF+R K   LG FDFVR+G RH +CSAFAM  M  EALAA  Y+      G      +  L    S PASA LCY PTSGG DGTWTTRTS   F+D   GG   G   +                     L P        LRLLVDG GCRHALR MRE +FG NGGCIAPRWRD T+P  +AALAAKRAVP N  A +P  +PPAPADPGVFSHS PTARASNWASC AS
Sbjct:    3 DVHDAIVGKVQDDANKSKRKTARGAVQRVRQPTATPFERGKDRWLGDFDFVRQGTRHPKCSAFAMNDMPAEALAAMGYKAEILATG--NDNVQRELAKMVSEPASAGLCYYPTSGGGDGTWTTRTS---FSD---GGPNCGHLVA---------------------LGPDGFILCTRLRLLVDGPGCRHALRAMREMDFGFNGGCIAPRWRDSTLPWMMAALAAKRAVPENTVAGVPGEMPPAPADPGVFSHSNPTARASNWASCVAS 241          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KKK0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK0_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 5.870e-79
Identity = 148/247 (59.92%), Postives = 172/247 (69.64%), Query Frame = 2
Query: 1157 SNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEG---GQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPPEGRDVGAG 1888
            S+PA A L YDPTSGG DGTWTTRTSVKFFA+LLE     ++V +  S +  GP+   +          L P        LRL V GLGCRH LR +R+++FG NGGCIA RWRD T P T+  LAAKRA P+N  A +P  +PPAP DP  FS+SKPTAR SNWASC A  KE+ASLMT+VD +APCQRVL+N      L N+AKQLIEVE RSQHEA+T+RIF GVVARP  ATDPPEG  VGAG
Sbjct:  132 SDPAIAGLSYDPTSGGGDGTWTTRTSVKFFAELLEDQVLDKLVRITRSFSDGGPNYGHL--------VALGPDGFVLCTCLRLRVYGLGCRHGLRAVRDTDFGFNGGCIASRWRDSTQPWTMEHLAAKRAAPANTAAGVPGGMPPAPVDPVFFSNSKPTARVSNWASCVAFGKELASLMTDVDAVAPCQRVLNN------LTNYAKQLIEVEARSQHEATTNRIFTGVVARPVTATDPPEGGPVGAG 364          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5JG50_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG50_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 7.580e-64
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1
Query:  316 TRYKYHLALIAVVDKENCTQIAMQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQSHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKTDFFKLLTLGAHMY 720
            TRYKY LALI VVDKEN TQIAMQALLSN RTEDF+FLFRVF+ELCEGAQPEVIFTD DQAAM AID+ECP S Q+LCLFHMD+NLGKHG+GLG GVLAAVKG  +AAA AQTEEMFLRHK D FK LT G+HMY
Sbjct:  181 TRYKYWLALIVVVDKENYTQIAMQALLSNERTEDFRFLFRVFRELCEGAQPEVIFTDGDQAAMTAIDQECPDSTQQLCLFHMDENLGKHGQGLGAGVLAAVKGAFHAAAYAQTEEMFLRHKMDVFKELTPGSHMY 315          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KJW1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW1_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 5.110e-62
Identity = 113/162 (69.75%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  322 YKYHLALIAVVDKENCTQIAMQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQSHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKTDFFKLLTLGAHMYT----------RVQRWASFLHPGIHTINI 777
            YKYHLALI VVDKEN TQIAMQALL+N RTEDFKFLFRVF+ELCEG QPE        AAM AIDEECP SHQKLCLFHMD+NL KHG GL QGVLA VKG  +AAA A TEEMFL+HK + FK L   +HMY           RVQRWASF+HPG+HT+NI
Sbjct:  147 YKYHLALIVVVDKENYTQIAMQALLANERTEDFKFLFRVFRELCEGVQPE--------AAMTAIDEECPASHQKLCLFHMDENLMKHGEGLEQGVLAGVKGMFHAAAYAHTEEMFLKHKANLFKQLKPDSHMYKYMADFVFEPRRVQRWASFVHPGLHTLNI 300          
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Match: A0A6H5KGZ7_9PHAE (MULE domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ7_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 6.590e-60
Identity = 157/366 (42.90%), Postives = 189/366 (51.64%), Query Frame = 2
Query:  773 TFNIHSTQRVESTNGALKTAMERSGTIVDVHYAVVGKVNGDANKSKRQTSGGTVHRVRQPTSSPFDRVKGS*LGGFDFVREGMRHAQCSAFAMQGMSTEALAATAYQGRHSGEGYVTTMCKAS--LPGWWSNPASARLCYDPTSGGDDGTWTTRTSVKFFADLLEGGQVVGLQYSCASPGPSRTRVGDPSTVTSSPLDPMASSSARALRLLVDGLGCRHALRVMRESNFGLNGGCIAPRWRDGTMP*TIAALAAKRAVPSNIGAELPRALPPAPADPGVFSHSKPTARASNWASCAASRKEVASLMTEVDTIAPCQRVLDNLLNLLNLLNHAKQLIEVEVRSQHEASTSRIFKGVVARPTAATDPP 1864
            T  I STQRVES N ALK AM RSGT+VDV+ A+ GKV  D   +K  T                                              MS EALAA  Y+     E   T  C     L    +NPA A L Y+ TSG  D T TTRTSVKFFA+LL   QV+       + G           V    L P        LR+LV+GLGC HALR + +++ G  G CIAPRWRDG MP T+A LAAK AV +     +P  +P  PADPGVFSHSK T RAS WASC A  K +A++   +D I    RVLDN      L N A+Q++EVE+RSQ+ ASTSR+FKGV+  PT A + P
Sbjct:  204 TLGISSTQRVESANAALKPAMSRSGTMVDVNRAIRGKVTDD---TKNDTD---------------------------------------------MSDEALAAMGYKA----ETLATGNCDVQRLLADLVANPAGAGLLYETTSG--DVTLTTRTSVKFFAELLRD-QVLERLVRVTNVGSQTNHC---HLVA---LGPDGFFLYTCLRILVEGLGCGHALRTIHDADLGFTGACIAPRWRDGIMPWTMAPLAAKPAVLATTATGVPGEMPAPPADPGVFSHSKTTVRASAWASCCAFGKRLATITAGIDNIPGISRVLDN------LKNQARQMVEVELRSQNNASTSRVFKGVITTPTTAPETP 502          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI64_9PHAE1.190e-12263.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFX3_9PHAE5.360e-10956.22SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYV9_9PHAE1.860e-9757.23SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1S8_9PHAE1.660e-8849.48SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KN91_9PHAE1.560e-8563.78SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQR1_9PHAE2.510e-8057.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK0_9PHAE5.870e-7959.92SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JG50_9PHAE7.580e-6482.22MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJW1_9PHAE5.110e-6269.75MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KGZ7_9PHAE6.590e-6042.90MULE domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3565171..3568703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1917
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15801.1prot_C-linearis_contig8.15801.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 3566429..3568322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930573.588094-UTR-C-linearis_contig8:3565170..35660331622930573.588094-UTR-C-linearis_contig8:3565170..3566033Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3565171..3566033 -
1690881139.8153605-UTR-C-linearis_contig8:3565170..35660331690881139.8153605-UTR-C-linearis_contig8:3565170..3566033Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3565171..3566033 -
1622930573.6166365-UTR-C-linearis_contig8:3566343..35664281622930573.6166365-UTR-C-linearis_contig8:3566343..3566428Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3566344..3566428 -
1690881139.8285365-UTR-C-linearis_contig8:3566343..35664281690881139.8285365-UTR-C-linearis_contig8:3566343..3566428Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3566344..3566428 -
1622930573.7317238-UTR-C-linearis_contig8:3568322..35687031622930573.7317238-UTR-C-linearis_contig8:3568322..3568703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3568323..3568703 -
1690881139.8978198-UTR-C-linearis_contig8:3568322..35687031690881139.8978198-UTR-C-linearis_contig8:3568322..3568703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 3568323..3568703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930573.6353035-CDS-C-linearis_contig8:3566428..35664851622930573.6353035-CDS-C-linearis_contig8:3566428..3566485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3566429..3566485 -
1690881139.8403747-CDS-C-linearis_contig8:3566428..35664851690881139.8403747-CDS-C-linearis_contig8:3566428..3566485Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3566429..3566485 -
1622930573.649089-CDS-C-linearis_contig8:3566956..35671461622930573.649089-CDS-C-linearis_contig8:3566956..3567146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3566957..3567146 -
1690881139.8519197-CDS-C-linearis_contig8:3566956..35671461690881139.8519197-CDS-C-linearis_contig8:3566956..3567146Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3566957..3567146 -
1622930573.6708355-CDS-C-linearis_contig8:3567498..35675601622930573.6708355-CDS-C-linearis_contig8:3567498..3567560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3567499..3567560 -
1690881139.8650625-CDS-C-linearis_contig8:3567498..35675601690881139.8650625-CDS-C-linearis_contig8:3567498..3567560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3567499..3567560 -
1622930573.6872613-CDS-C-linearis_contig8:3567842..35680311622930573.6872613-CDS-C-linearis_contig8:3567842..3568031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3567843..3568031 -
1690881139.8757455-CDS-C-linearis_contig8:3567842..35680311690881139.8757455-CDS-C-linearis_contig8:3567842..3568031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3567843..3568031 -
1622930573.7094815-CDS-C-linearis_contig8:3568232..35683221622930573.7094815-CDS-C-linearis_contig8:3568232..3568322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3568233..3568322 -
1690881139.8871143-CDS-C-linearis_contig8:3568232..35683221690881139.8871143-CDS-C-linearis_contig8:3568232..3568322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 3568233..3568322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15801.1

>prot_C-linearis_contig8.15801.1 ID=prot_C-linearis_contig8.15801.1|Name=mRNA_C-linearis_contig8.15801.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MQALLSNGRTEDFKFLFRVFKELCEGAQPEVIFTDADQAAMAAIDEECPQ
SHQKLCLFHMDDNLGKHGRGLGQGVLAAVKGKLYAAACAQTEEMFLRHKT
DFFKLLTLGAHMYTRVQRWASFLHPGIHTINIQHSLHAASGIDQWCLEDG
DGKVGDYSRRALRRRGQGQRRRKQKQKANLWGHGPPRAPTDFLAL*
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mRNA from alignment at C-linearis_contig8:3565171..3568703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15801.1 ID=mRNA_C-linearis_contig8.15801.1|Name=mRNA_C-linearis_contig8.15801.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3533bp|location=Sequence derived from alignment at C-linearis_contig8:3565171..3568703- (Chordaria linearis ClinC8C monoicous)
CTGTGATCAACAGCCGGCTGGAAACAGATGGTTCGGCCCTGTGCCCTTTC GCAGACTGATGCGGGGCGCTCACTGCATGGCTCGTACACCGAAAGCACAA AAGATGAGGCATGCGCACGCGTATGGCACTTCTTACCCACAACCAGTGAA ACTGCTGTTGAATACCATCGTTGAAATTCGGTTGAGATTCGGTTGCAACC CGCCAATGACACATGAACATCCGTCTCGCTGTCCTTCCAGCTCGCTCGCC TATTGCGCACAACTTTCTCATGCCCCGCGTGTCCGGGTTGTGCTCAACTT GTTCGTGGTCCTCCAACCAGATACAAGTACCACTTGGCACTAATCGCCGT CGTGGACAAGGAGAACTGCACGCAGATCGCGATGCAGGCCCTGCTTTCGA ACGGGCGGACGGAGGACTTCAAATTCCTCTTCCGGGTTTTCAAGGAACTA TGCGAAGGGGCCCAACCAGAGGTGAGCCCGCCACCCATTGGCAGCGTAAC CGTGGCACACATTCATTGGTACCCAAGGACCGCACGAGACTCTACGACCT CATTTGCCCGTAAGAGGATTTCGTTCGTGAAGATGATGTACACATGGATT GTGTTGAGAGCTTATTCCCGACGTCCTCGCGCTTTCCCTGAATGTGCGTC GGTCACTCTCGTTGCGAGCTAGGTGATCTTCACTGACGCTGACCAGGCAG CAATGGCGGCAATCGACGAAGAGTGCCCGCAGTCGCACCAGAAGTTGTGC CTGTTCCACATGGATGATAACCTCGGGAAGCATGGCAGAGGTCTTGGGCA GGGCGTCCTGGCGGCGGTGAAAGGGAAGCTCTACGCAGCAGCATGCGCCC AAACCGAGGAGGTAGGTAATCGTCTTGGGAACGTTAACGTTCTTGTCGAG TTCATGAAATGGTTCTGTGGGGTCGTTCGCCTTGTTGACGGAGCTCGGGG GAAAGGCTGCCAAACTAGTGGGGCGTGTACGGATGGCGCGTACAGACGGT GCATCATTGGAGCATGCAATCTGCGGCGTGTTATTCTTTCCTAAAAGCTT TTCAGGTAGAGCTTGAACGTGCAGTTCCCTTCGGCCGCCCCACCCGATTC CCCCCTCACCCTCGCCTGTTCCGCGCATTTTTCGATGTCACAGATGTTCC TTCGGCACAAAACGGATTTCTTCAAGCTGCTTACCCTGGGCGCCCACATG TACACGTACGTGTAGGATTTCGTTTTTGACCCAAGGTAGGCAGTGTCTGT CACGGCAGCAGCCGAGTTAGGGATGCGCAAACGGTGATCTCTAGAGACCT CCACCTCTCAGAGCTTCGTCGATTGCGGTTCCCCCCCCCCACCGGGTTTT TTTTTTCCCTAGCTTCTGTGGACTTTGCCCCGCCCCCCCAGCCGGGGAAC TTCCGCGACCCGTTCGCGTTGTTTTTGGTTGTTCAATTTGTTGGTTGATT CGCTACTTGTCGCTGAGCGTTGCACGAGTAAAGTCCCTCGCGTTTTTCTC CTTGGCTTCCGTCGCGCCAAACTCTATTCGTTTGAACAATCCCGGCGCAC GCAACAGGCGGGTACAGCGGTGGGCTTCGTTTTTGCACCCTGGCATCCAC ACGATCAACATTCAACATTCACTCCACGCAGCGAGTGGAATCGACCAATG GTGCCTTGAAGACGGCGATGGAAAGGTCGGGGACTATAGTCGACGTGCAT TACGCCGTCGTGGGCAAGGTCAACGGCGACGCAAACAAAAGCAAAAGGTG GGCATTTTGTTGAACTCGTCGGTTATTTTTCAAGGTCGTTGTATCCGTTG CGTCAACATCGACTACAAAGAAAAGCGTTAAGGCGGCGTGTTGTTGGTGA AATTTTGTTGCCAACCGCGCACAAGGGGAAGTGTCTCGGCCTGCCCATAG AAGAAACTCAACTCTCCCACTATTTCAAAACCAGCGTGCGTCCCCATGAC CGGCTGTCGACAGCGACTACAAGCGAGGAAGCTTTTCTAGACACGTGTCG TTCCATGTAACCCACGGAATGTCCGTAGTCATCTCAAGCTGTTAGGCTGG CCGATGGAATCACGGGATCGAGTCAACACCGCACATCCACTCGCGAGGTC CACGCCCCGGCGGTTCACCGCTTCATTTTTTTTGTCCTCTGCAAAATGCG TGTTGCCTTCCTATCAACTAGTTCCACCTTCTGCCCGCCCTCTTGCTGCT GGCCCGCGCACTTTGAAGGCAAACCTCTGGGGGCACGGTCCACCGCGTGC GCCAACCGACTTCCTCGCCCTTTGATAGAGTGAAGGGCAGCTGACTGGGA GGTTTCGACTTCGTGAGGGAGGGTATGCGACACGCGCAATGCAGCGCCTT CGCCATGCAGGTCAGTTTTTGCGCTCGTAGGTCTGCCGAGGGAAGACCCC TTCGGGTATCGCTCCTCTCTCGCCTCGCACCCTTCATCCTTCCCTCCCCC TCCCACCGGTGTGACCCTGCCTGACTTCGCTATTGGTATCCCTACCGCAG AGCGCGGCAACACAGTGATATCTGCGTGCTTTGCATGGCACAAACAATGA TGCTGTTGGGTGGAGATAGGTGAAGAGCGTGCAGCTTCAACCCCTTGATT TGTTTTCTCCCCCCCCCCACCCCCTTCCTCGTACACCGGCTTCACGTTTT CGTTCCGTCAAATCTTTCAGGGTATGTCGACCGAGGCCTTGGCGGCTACG GCCTATCAAGGTCGACACTCTGGCGAGGGATATGTAACGACAATGTGCAA GGCGAGCTTGCCAGGATGGTGGTCGAACCCGGCTAGCGCGCGACTGTGTT ACGACCCCACCTCCGGCGGAGACGATGGCACGTGGACCACCCGGACTTCC GTCAAGTTCTTCGCGGACTTGCTCGAGGGCGGCCAGGTTGTCGGCCTACA GTACTCGTGCGCATCACCAGGACCTTCCCGGACCCGGGTGGGGGACCCCA GTACTGTCACCTCGTCGCCCTTGGACCCGATGGCTTCGTCCTCTGCACGT GCCCTGCGGCTCCTCGTCGACGGCCTCGGCTGCCGACATGCCCTCCGGGT GATGCGCGAATCAAATTTCGGGTTAAACGGGGGGTGTATTGCACCCCGCT GGCGTGACGGCACTATGCCGTAGACGATAGCAGCCCTCGCCGCGAAGCGT GCGGTGCCATCGAACATAGGTGCCGAGCTTCCCCGAGCGCTGCCGCCCGC TCCTGCGGATCCTGGCGTTTTCTCCCACTCGAAACCCACGGCGAGAGCAA GCAATTGGGCCAGCTGCGCCGCCTCCAGGAAGGAGGTCGCATCTCTCATG ACAGAGGTCGACACCATCGCCCCCTGCCAACGCGTCCTGGACAACCTTCT CAACCTTCTCAACCTTCTCAACCACGCAAAGCAGCTCATCGAGGTGGAGG TGAGGTCGCAGCATGAGGCCTCCACGAGCCGGATTTTCAAGGGGGTCGTT GCCCGGCCTACGGCCGCCACCGATCCGCCAGAGGGACGGGACGTAGGGGC GGGGCCGGGCGGGGGTCGCGGGCGAGGAAACGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:3565171..3568703-

>mRNA_C-linearis_contig8.15801.1 ID=mRNA_C-linearis_contig8.15801.1|Name=mRNA_C-linearis_contig8.15801.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig8:3565171..3568703- (Chordaria linearis ClinC8C monoicous)
ATGCAGGCCCTGCTTTCGAACGGGCGGACGGAGGACTTCAAATTCCTCTT
CCGGGTTTTCAAGGAACTATGCGAAGGGGCCCAACCAGAGATGCAGGCCC
TGCTTTCGAACGGGCGGACGGAGGACTTCAAATTCCTCTTCCGGGTTTTC
AAGGAACTATGCGAAGGGGCCCAACCAGAGGTGATCTTCACTGACGCTGA
CCAGGCAGCAATGGCGGCAATCGACGAAGAGTGCCCGCAGTCGCACCAGA
AGTTGTGCCTGTTCCACATGGATGATAACCTCGGGAAGCATGGCAGAGGT
CTTGGGCAGGGCGTCCTGGCGGCGGTGAAAGGGAAGCTCTACGCAGCAGC
ATGCGCCCAAACCGAGGAGGTGATCTTCACTGACGCTGACCAGGCAGCAA
TGGCGGCAATCGACGAAGAGTGCCCGCAGTCGCACCAGAAGTTGTGCCTG
TTCCACATGGATGATAACCTCGGGAAGCATGGCAGAGGTCTTGGGCAGGG
CGTCCTGGCGGCGGTGAAAGGGAAGCTCTACGCAGCAGCATGCGCCCAAA
CCGAGGAGATGTTCCTTCGGCACAAAACGGATTTCTTCAAGCTGCTTACC
CTGGGCGCCCACATGTACACATGTTCCTTCGGCACAAAACGGATTTCTTC
AAGCTGCTTACCCTGGGCGCCCACATGTACACGCGGGTACAGCGGTGGGC
TTCGTTTTTGCACCCTGGCATCCACACGATCAACATTCAACATTCACTCC
ACGCAGCGAGTGGAATCGACCAATGGTGCCTTGAAGACGGCGATGGAAAG
GTCGGGGACTATAGTCGACGTGCATTACGCCGTCGTGGGCAAGGTCAACG
GCGACGCAAACAAAAGCAAAAGGCGGGTACAGCGGTGGGCTTCGTTTTTG
CACCCTGGCATCCACACGATCAACATTCAACATTCACTCCACGCAGCGAG
TGGAATCGACCAATGGTGCCTTGAAGACGGCGATGGAAAGGTCGGGGACT
ATAGTCGACGTGCATTACGCCGTCGTGGGCAAGGTCAACGGCGACGCAAA
CAAAAGCAAAAGGCAAACCTCTGGGGGCACGGTCCACCGCGTGCGCCAAC
CGACTTCCTCGCCCTTTGAGCAAACCTCTGGGGGCACGGTCCACCGCGTG
CGCCAACCGACTTCCTCGCCCTTTGA
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