mRNA_C-linearis_contig8.15723.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15723.1
Unique NamemRNA_C-linearis_contig8.15723.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2911409..2912190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002180.1
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.925531-CDS-C-linearis_contig8:2911408..29116141622930502.925531-CDS-C-linearis_contig8:2911408..2911614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2911409..2911614 -
1690881102.9780705-CDS-C-linearis_contig8:2911408..29116141690881102.9780705-CDS-C-linearis_contig8:2911408..2911614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2911409..2911614 -
1622930502.9447446-CDS-C-linearis_contig8:2911997..29121901622930502.9447446-CDS-C-linearis_contig8:2911997..2912190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2911998..2912190 -
1690881102.9976501-CDS-C-linearis_contig8:2911997..29121901690881102.9976501-CDS-C-linearis_contig8:2911997..2912190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2911998..2912190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15723.1prot_C-linearis_contig8.15723.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2911409..2912190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15723.1

>prot_C-linearis_contig8.15723.1 ID=prot_C-linearis_contig8.15723.1|Name=mRNA_C-linearis_contig8.15723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=133bp
KGDSSVAGDVQGVNASPRRLAGSVRRGEEDGDQGHMSPLTRLLAETPVRL
KASGDRPNWGADPIAAAPSFGFDPQMHGLATGGNDCGTQTRRTRPAAAAA
AAAEDSPDASGSVAGAARRARALWGTPSAAAAA
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mRNA from alignment at C-linearis_contig8:2911409..2912190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15723.1 ID=mRNA_C-linearis_contig8.15723.1|Name=mRNA_C-linearis_contig8.15723.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at C-linearis_contig8:2911409..2912190- (Chordaria linearis ClinC8C monoicous)
AAAGGCGACAGCAGTGTCGCGGGCGACGTTCAAGGAGTGAACGCATCGCC
CCGGCGGCTAGCGGGGTCGGTCCGGCGAGGAGAGGAAGATGGCGACCAGG
GCCACATGTCTCCGTTAACTCGGCTTCTGGCGGAAACGCCTGTGCGGTTG
AAGGCTTCGGGTGATCGCCCGAACTGGGGAGCCGATCCGATAGGTAATTC
AAAGCATATCACATTCAATATTTCAAGAGTTGGTTGCTCCTCAGCTTCTT
CATGCTTTTGGAGATTTCCCCCCGTCGTACATCCTGCCCCTCCCTCCGTG
CAGAAAGTGGTTCCTTAGTTGGTTGTTGAACTTTTGGGGGGGGGTGGAGA
CCGTTGTGCTGACCGTTGGTCCTGGTTTTTGCTACTTCCGCAAGCACCAC
GACGGGTGGGGACCTGCCGCCTCAGCTCTGCTCTCCTCTCTTCAACATGC
GCAGCAGTGCCCTCTCTACGCAAGCAACAAATACACCCCCCCCCCCGCCC
TAGCTAGCTTTCTCTTCCCCATCACGCTCCCACTCTCGTTGTCTGTTTTC
CGGTTGGTGCGTCCTGGACTCAACAGCAGCAGCGCCCTCGTTCGGATTCG
ACCCTCAAATGCACGGACTCGCTACCGGCGGTAACGACTGCGGCACCCAA
ACGAGACGCACACGCCCGGCGGCGGCGGCGGCGGCAGCGGCGGAAGACTC
TCCAGACGCCAGTGGCAGTGTTGCTGGAGCGGCCCGGCGAGCACGAGCAC
TCTGGGGCACACCGTCCGCCGCAGCCGCTGCC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2911409..2912190-

>mRNA_C-linearis_contig8.15723.1 ID=mRNA_C-linearis_contig8.15723.1|Name=mRNA_C-linearis_contig8.15723.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at C-linearis_contig8:2911409..2912190- (Chordaria linearis ClinC8C monoicous)
AAAGGCGACAGCAGTGTCGCGGGCGACGTTCAAGGAGTGAACGCATCGCC
CCGGCGGCTAGCGGGGTCGGTCCGGCGAGGAGAGGAAGATGGCGACCAGG
GCCACATGTCTCCGTTAACTCGGCTTCTGGCGGAAACGCCTGTGCGGTTG
AAGGCTTCGGGTGATCGCCCGAACTGGGGAGCCGATCCGATAGAAAGGCG
ACAGCAGTGTCGCGGGCGACGTTCAAGGAGTGAACGCATCGCCCCGGCGG
CTAGCGGGGTCGGTCCGGCGAGGAGAGGAAGATGGCGACCAGGGCCACAT
GTCTCCGTTAACTCGGCTTCTGGCGGAAACGCCTGTGCGGTTGAAGGCTT
CGGGTGATCGCCCGAACTGGGGAGCCGATCCGATAGCAGCAGCGCCCTCG
TTCGGATTCGACCCTCAAATGCACGGACTCGCTACCGGCGGTAACGACTG
CGGCACCCAAACGAGACGCACACGCCCGGCGGCGGCGGCGGCGGCAGCGG
CGGAAGACTCTCCAGACGCCAGTGGCAGTGTTGCTGGAGCGGCCCGGCGA
GCACGAGCACTCTGGGGCACACCGTCCGCCGCAGCCGCTGCCCAGCAGCG
CCCTCGTTCGGATTCGACCCTCAAATGCACGGACTCGCTACCGGCGGTAA
CGACTGCGGCACCCAAACGAGACGCACACGCCCGGCGGCGGCGGCGGCGG
CAGCGGCGGAAGACTCTCCAGACGCCAGTGGCAGTGTTGCTGGAGCGGCC
CGGCGAGCACGAGCACTCTGGGGCACACCGTCCGCCGCAGCCGCTGCC
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