mRNA_C-linearis_contig8.15722.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: D8LLY4_ECTSI (MSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY4_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 2.540e-153 Identity = 237/305 (77.70%), Postives = 255/305 (83.61%), Query Frame = 2
Query: 59 MTAPENLFALECFPSKVLDFALEDGTEPTECVLHLTNNGSEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGCNETNKFMVQALPLQGDTATAGAVPAGIWEEAKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGGGDS----------ALQGS---DASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASAPPGSRSGFSLFFVLVVAMFALFAGQWTASNGYPLLPAS 934
M A + LFALEC PSKVLDFALEDG EP ECVLHLTNNGSE VAFKVKTTKPKRYLVRPNQGVV P+E LPVSIVLLA DKVGLI+EF QTGGCNETNKFMVQALPLQG++ATAGAVP G+W+EAKARVQQKKLVV FTFPR P S+A L++ASN +RDA+ G S LQG D SD+SQ QMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDL REQQARK LE KMMEPGARRPAGSV G+++P SRSGFSLFFVL+VA ALFAGQWTA+NGYPLL S
Sbjct: 1 MAAQDALFALECLPSKVLDFALEDGAEPAECVLHLTNNGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLPVSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGESATAGAVPPGLWKEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGGAGGDGSDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVAGSTSPSESRSGFSLFFVLIVAALALFAGQWTAANGYPLLLGS 305
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A7S2RAX6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAX6_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.060e-28 Identity = 109/311 (35.05%), Postives = 160/311 (51.45%), Query Frame = 2
Query: 80 FALECFPSKVLDFALEDGT---------EPT-ECVLHLTNNGS--EPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGC---NETNKFMVQALPLQGDTATAG-AVPAGIWEEAKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNR---IRDAVGGGDSA-LQGSDA----------SDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASA---PPGSRSGFSLFFVLVVAMFALFAGQWTASNG 913
+ALE P L F L GT E T C + L + G E +AFKVKTT+P+RYLVRPNQGVV P + V+I+L+ +DK L+ + + G + +KF+VQ+ D A+ + A ++++ K+L S T +SAA G N+ + V DSA +G +A ++S Q++A+ + LRRKYD+LVSF++NLTAE+D++ +L TK DL RE A+ LE K ++GA + P S GFSLF V+ VA+ G A++G
Sbjct: 6 YALEISPDSTLQFTLTRGTANDGRSTVGESTPRCTMSLRHPGKTKEHLAFKVKTTQPRRYLVRPNQGVVAPGTTEKVTILLVEKDKQILLQSYDRLGQTALDHSKDKFLVQSCTTPDDFASRYMSAKADSTDDSEGNRATKELAESLTTMW----NSAAGGDLPIYNKKLHVHHVVSPSDSASAKGGNAPQPLEEKPSMENMSPDQIYAEVSSLRRKYDELVSFSVNLTAERDILNNTLEQTKRDLNRETMAKAALENK-----------GLIGARSKGVPKQSSRGFSLFSVIFVALTFTLLGIKGATSG 301
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A6U6EE94_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EE94_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.660e-27 Identity = 112/330 (33.94%), Postives = 160/330 (48.48%), Query Frame = 2
Query: 83 ALECFPSKVLDFAL----------EDGTEPTE-CVLHLTNNG--SEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGC---NETNKFMVQALPLQGDTAT--------------AGAVPAGIWEE---------------AKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGGGDSALQGSDASDISQ---GQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASAPPGSRSGFSLFFVLVVAMFALFAG-QWTASNGYPLL 925
ALE P L F L EPT C + L + G SE +AFKVKTT+P+RYLVRPNQGVV P + VSI+L+ +DK L+ + + G + +KF+VQ+ + D A+ +GA +G+ +E + KKL V P++ + A G A+ AV ALQ + +++ QM+ + + LRRKYD+LVSF++NLTAE+D++ +L TK DL RE AR LE GA GA+ G S+ +LVVA+ LFAG + + S+G L
Sbjct: 9 ALEVTPESALQFTLTRTAENSASASSSNEPTSRCTMTLRHTGGTSEHLAFKVKTTQPRRYLVRPNQGVVAPNSTETVSILLVERDKQILLHSYDRLGQSALDHSKDKFLVQSCAVTDDFASRYMDERSKAKKIDDSGAKASGMSKEMADSLTSMWNAVASGGSVPIFNKKLHVRHVVPKSDNVTQRAVGDLSAT-----AVSKSPPALQETQKTNVENMTPEQMFTEISSLRRKYDELVSFSVNLTAERDILNNTLEQTKRDLNREMAARAALENSGAGGGAGTKHEKSKGAT-------GLSILQILVVALVFLFAGIKLSTSDGVNFL 326
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: K0R3I0_THAOC (MSP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I0_THAOC) HSP 1 Score: 115 bits (288), Expect = 4.000e-26 Identity = 106/320 (33.12%), Postives = 160/320 (50.00%), Query Frame = 2
Query: 80 FALECFPSKVLDFAL----EDGTEPTECVLHLTN-----NGSEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGC---NETNKFMVQALPLQGDTATA--------------GAVPA--GIWEEAKA-----RVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGGGDSALQGS----DASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASAPPGSRSGFSL-FFVLVVAMFALFAGQWTASNGYPLL 925
+AL P L F L ++G + C++ LT+ G +AFKVKTT+P+RYLVRPNQG+V P S VSI+L+ +D+ L A + + G + +KF+VQ+ + D A V A +W +A + V KKL V + + S+ + G AS + GGG A S +A +S Q+ + + LRRKYD+LV+F++NLTAE+D++ +L TK DL RE R LE + ++ G+R AS G G+SL +L VAM +F+ + T + +L
Sbjct: 6 YALSISPDSALQFNLTPDADNGDGASRCIMTLTHPRKDGKGGGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAVPDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHS----VGGSAGSGGTPAASASSPXSSGGGLPATFDSGKRNNADKMSPDQLQDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQGLKVGSR-------SASTRSGEAGGYSLKTLLLFVAMTFVFSVKGTNTGALKVL 314
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A7S0UGK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGK8_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.300e-24 Identity = 83/241 (34.44%), Postives = 127/241 (52.70%), Query Frame = 2
Query: 98 PSKVLDFALEDGTEPTECVLHLTNNG--SEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFR---QTGGCNETNKFMVQALPLQGDTATAGA--------VPAGIWEE-----AKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGGGDSALQGSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAK 766
P L F+L C++ L + G +E +AFKVKTT+P+RYLVRPNQG++ P S +SI+L+ +DK L+ + Q+G + +KF+VQ+ A + +W + +Q KKL V R + SS A +A++ + + A S+ D+S Q+ ++ + LRRKYD+LVSF++NLTAE+D++ +L TK D RE AR LE K
Sbjct: 10 PESELVFSLSPNEATPRCMMTLKHGGGSTESIAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQVLLQNYDRLGQSGLDHSKDKFLVQSCAADSSLAAKKSGSQTELYDALTAMWNSVTSGGSSTPLQNKKLHV-----RHVVDSSPAPATSDAASTPKPKL----EAASHSNLGDMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREIAARSALENK 241
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A7R9WSF8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSF8_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.310e-24 Identity = 84/249 (33.73%), Postives = 131/249 (52.61%), Query Frame = 2
Query: 74 NLFALECFPSKVLDFALEDGTEPTECVLHLTNNG--SEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFR---QTGGCNETNKFMVQAL--------PLQGDTATAGAVPAGIW-----EEAKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGGGDSALQGSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAK 766
+L +LE P LDF L + L L + G + +A+K+KTT+P+RYLVRPNQG++ P S VSI+L+ +DK L+ + QTG + +KF+VQ+ L D+ +W ++++A V +K+ V +P+S A G + + + A ++ +S Q+ ++ LRRKYDDLVSF++NLTAE+D++ +L TK D REQ R LE+K
Sbjct: 3 SLNSLEITPDTYLDFNLAPNELTSRTTLTLRHPGHTDDHIAYKIKTTQPRRYLVRPNQGMIAPGGSDTVSILLIEKDKQILLQSYEKLGQTGLDHSKDKFLVQSCVVSSAFSSKLTKDSTELYEALTSMWNSVSNKDSQASVSHRKMHVRHQVVDN-SPTSPANGSKTVAKSFKR------EASSQANVDTMSTDQLKSELTNLRRKYDDLVSFSMNLTAERDILSNTLEQTKRDYNREQATRSALESK 244
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: B8BSB8_THAPS (MSP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSB8_THAPS) HSP 1 Score: 107 bits (267), Expect = 8.800e-23 Identity = 88/268 (32.84%), Postives = 134/268 (50.00%), Query Frame = 2
Query: 80 FALECFPSKVLDFALE-----DGTEPTECVLHLTNNG--SEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGC---NETNKFMVQALPL--------------QGDTATAGAVPA--GIWEEAKAR------VQQKKLVVSFTFPRAL---APSSAAAGLQEASNRIRDAVGGGDSALQ------GSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLE 760
+ALE P +L F + DG + + C + L + G E +AFKVKTT+P+RYLVRPNQG+V P + +SI+L+ +D+ L + + + G + +KF+VQ+ + +G V A G+W + V KKL V A A + GL A+ I A GG S Q + D++ Q+ + +RRKYD+LV+F++NLTAE+D++ +L TK DL RE +R+ LE
Sbjct: 7 YALEVTPDSLLQFTITQNPSGDGEDGSRCTMTLRHTGLTEECLAFKVKTTQPRRYLVRPNQGIVTPNSTETISILLVDKDRQVLYSTYERLGQSALDHSKDKFLVQSCAVSEDFSGMFRNEPRGEGGQYKKELVEALTGMWNGVASGSGNSVPVFNKKLHVRHVVDDAAVGGAGGGSDVGLGGAARGIPSATGGTPSNFQRTTTNNNTSTKDMTPSQLNNEVEAIRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNREMASRQALE 274
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO) HSP 1 Score: 104 bits (259), Expect = 2.580e-22 Identity = 84/280 (30.00%), Postives = 139/280 (49.64%), Query Frame = 2
Query: 86 LECFPSKVLDFALEDGTEPTECVLHLTNN--GSEPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGCN---ETNKFMVQALPLQGDTATAGAVPAGIWEEAKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNRIRDAVGG-----------GDSALQGSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASAPPGSRSGFSLFFVLVVAMF 877
L+ P L F L + + C L L + S P+AFKVKTT+P+RYLVRPNQG++ P + V I+L+ ++K L+ + + G +KF+VQ++ + + A ++ + S +PS++ + + ++ V G G+S++ +++Q Q A+ +RRKYD+LV+F++NLTAE+D++ +L TK DL RE + A+ G R AG+ SA P + F L F+L +A F
Sbjct: 13 LDLNPDSTLQFTLSNQEQSPSCSLELRHPDASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDASKLAS-------------LKDYDELTSLWATVGNSPSTSTSAVANKKLHVKHVVAGNKKSGSGDGAHGNSSISREPIENLTQDQAKAELTNMRRKYDELVAFSVNLTAERDMLNNTLEQTKRDLNRELS---KTAAQDNASGRGRAAGN---GSAKPNAGVTFVLVFLLSMASF 273
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A1E7FVV3_9STRA (MSP domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVV3_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.570e-22 Identity = 80/214 (37.38%), Postives = 119/214 (55.61%), Query Frame = 2
Query: 185 VAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFR---QTGGCNETNKFMVQ---------ALPLQGDTATAGAVPAGIWEE-----AKARVQQKKLVVSF---TFPRALAPSSAAAGLQEASNRIRDAVGGGDSALQGSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAK 766
+AFKVKTT+P+RYLVRPNQG++ P S +SI+L+ +DK L+ + Q+G + +KF+VQ A L T A+ +W + A +Q KKL V T P +LA +S +G + + R+ Q S+ ++S Q+ ++ + LRRKYD+LVSF++NLTAE+D++ +L TK D RE AR LE K
Sbjct: 13 IAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQALLQSYERLGQSGLDHSKDKFLVQSCTVDKTFAAKKLGSQTDLYDALTT-MWNSVTSGGSSAALQNKKLHVRHIVSTSP-SLAGTSNTSGSKGVAPRLE--------TTQHSNMVEMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREMAARSALENK 216
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Match: A0A7S4QY17_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY17_9STRA) HSP 1 Score: 101 bits (251), Expect = 8.910e-21 Identity = 98/310 (31.61%), Postives = 151/310 (48.71%), Query Frame = 2
Query: 80 FALECFPSKVLDFAL---------EDGTEP--TECVLHLTNNGS--EPVAFKVKTTKPKRYLVRPNQGVVGPTESLPVSIVLLAQDKVGLIAEFRQTGGC---NETNKFMVQALPLQGDTATA-GAVPAGIWEEAKARVQQKKLVVSFTFPRALAPSSAAAGLQEASNR---IRDAV-----GGGDSALQ-------GSDASDISQGQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLQREQQARKQLEAKMMEPGARRPAGSVVGASAPP-----GSRSGFSLFFV--LVVAMFALFAG 892
+ALE P L F L T+ T C + L + G + +AFKVKTT+P+RYLVRPNQG+V P + VSI+L+ +DK L+ + + G + +KF+VQ+ + A+ G +++ K++ T +L ++ +G N+ +R V G D Q + ++S QM+++ + LRRKYD+LV+F++NLTAE+D++ SL TK DL RE A+K L+ + GASA G GFSL V +V+A+ AG
Sbjct: 10 YALEVTPESALQFTLTRTPASAAENSSTDAGVTRCTMTLRHPGKTGQHLAFKVKTTQPRRYLVRPNQGIVAPNSTETVSILLVEKDKQILLQSYDRLGQSALDHSKDKFLVQSCAAPDEFASLYDKEKRGDEQKSDGYKTSKEMAEKLT---SLWDKTSTSGESPVFNKKLHVRHVVMEIKSGTPDPTAQVPTTRSDKTPVENMSPEQMFSEVSSLRRKYDELVAFSVNLTAERDILNNSLEQTKRDLNREIAAKKTLQE------------AAGGASADSRSIARGDTGGFSLSVVQVMVIAIACFLAG 304 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15722.1 >prot_C-linearis_contig8.15722.1 ID=prot_C-linearis_contig8.15722.1|Name=mRNA_C-linearis_contig8.15722.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp MTAPENLFALECFPSKVLDFALEDGTEPTECVLHLTNNGSEPVAFKVKTTback to top mRNA from alignment at C-linearis_contig8:2900916..2908191+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15722.1 ID=mRNA_C-linearis_contig8.15722.1|Name=mRNA_C-linearis_contig8.15722.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7276bp|location=Sequence derived from alignment at C-linearis_contig8:2900916..2908191+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2900916..2908191+ >mRNA_C-linearis_contig8.15722.1 ID=mRNA_C-linearis_contig8.15722.1|Name=mRNA_C-linearis_contig8.15722.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig8:2900916..2908191+ (Chordaria linearis ClinC8C monoicous)back to top |