mRNA_C-linearis_contig8.15702.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15702.1
Unique NamemRNA_C-linearis_contig8.15702.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2698820..2699492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.0809958-CDS-C-linearis_contig8:2698819..26992511622930505.0809958-CDS-C-linearis_contig8:2698819..2699251Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2698820..2699251 +
1690881103.7770479-CDS-C-linearis_contig8:2698819..26992511690881103.7770479-CDS-C-linearis_contig8:2698819..2699251Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2698820..2699251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.1028583-UTR-C-linearis_contig8:2699251..26994921622930505.1028583-UTR-C-linearis_contig8:2699251..2699492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2699252..2699492 +
1690881103.7876723-UTR-C-linearis_contig8:2699251..26994921690881103.7876723-UTR-C-linearis_contig8:2699251..2699492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2699252..2699492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15702.1prot_C-linearis_contig8.15702.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2698820..2699251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15702.1

>prot_C-linearis_contig8.15702.1 ID=prot_C-linearis_contig8.15702.1|Name=mRNA_C-linearis_contig8.15702.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
LLWLGGQVSIISATITRSCLEKRSDHRLLKIIEKSFVDVLYLCTLARPNT
TPGDTNRITIFLPRPRSRRRKQEIQSPNKNVVSTHFFSKREVILKRRQHP
TVRRLRQQKQRDEILWPRDPLYDQETNERLLLYHSKKEGRHGK*
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mRNA from alignment at C-linearis_contig8:2698820..2699492+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15702.1 ID=mRNA_C-linearis_contig8.15702.1|Name=mRNA_C-linearis_contig8.15702.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=673bp|location=Sequence derived from alignment at C-linearis_contig8:2698820..2699492+ (Chordaria linearis ClinC8C monoicous)
CTCTTGTGGCTTGGTGGACAGGTATCTATTATATCTGCCACAATAACACG
TTCTTGTCTTGAAAAGCGAAGCGACCATCGCTTGTTGAAAATCATAGAAA
AAAGCTTTGTTGATGTACTTTATTTATGTACGCTTGCGCGACCCAACACG
ACCCCCGGTGATACAAATCGGATCACAATTTTTTTACCACGCCCCCGAAG
CAGAAGAAGAAAACAAGAAATACAAAGTCCTAACAAAAACGTCGTCAGTA
CGCACTTTTTTAGCAAAAGAGAAGTAATCCTGAAAAGGAGACAACATCCG
ACTGTCCGACGGCTGCGACAGCAGAAACAGCGAGATGAGATCCTTTGGCC
TCGAGACCCTTTGTACGACCAAGAAACGAACGAGAGACTACTACTGTATC
ATAGCAAGAAGGAAGGGCGCCACGGAAAATGACCGCACCTTCGAGGCCGG
TCGTGTGCGTGCACCTTACCACTCCTCACCGACTACTGTAGACTGTGAGG
CTAACTGCAGTAAACGTTTTGAACCAGAAAACATTACACAACCGAAAATT
TAATCACACAGCACCACGCGCTCAGCAGCTCGACACACCAGAGATATCGA
TACAATCTAAGAATCACCCATCACAACTCCTCCCAGCGAACATGCAGGCG
GATCAACCCCCCCCCTCTCCTTC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2698820..2699492+

>mRNA_C-linearis_contig8.15702.1 ID=mRNA_C-linearis_contig8.15702.1|Name=mRNA_C-linearis_contig8.15702.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig8:2698820..2699492+ (Chordaria linearis ClinC8C monoicous)
CTCTTGTGGCTTGGTGGACAGGTATCTATTATATCTGCCACAATAACACG
TTCTTGTCTTGAAAAGCGAAGCGACCATCGCTTGTTGAAAATCATAGAAA
AAAGCTTTGTTGATGTACTTTATTTATGTACGCTTGCGCGACCCAACACG
ACCCCCGGTGATACAAATCGGATCACAATTTTTTTACCACGCCCCCGAAG
CAGAAGAAGAAAACAAGAAATACAAAGTCCTAACAAAAACGTCGTCAGTA
CGCACTTTTTTAGCAAAAGAGAAGTAATCCTGAAAAGGAGACAACATCCG
ACTGTCCGACGGCTGCGACAGCAGAAACAGCGAGATGAGATCCTTTGGCC
TCGAGACCCTTTGTACGACCAAGAAACGAACGAGAGACTACTACTGTATC
ATAGCAAGAAGGAAGGGCGCCACGGAAAATGACTCTTGTGGCTTGGTGGA
CAGGTATCTATTATATCTGCCACAATAACACGTTCTTGTCTTGAAAAGCG
AAGCGACCATCGCTTGTTGAAAATCATAGAAAAAAGCTTTGTTGATGTAC
TTTATTTATGTACGCTTGCGCGACCCAACACGACCCCCGGTGATACAAAT
CGGATCACAATTTTTTTACCACGCCCCCGAAGCAGAAGAAGAAAACAAGA
AATACAAAGTCCTAACAAAAACGTCGTCAGTACGCACTTTTTTAGCAAAA
GAGAAGTAATCCTGAAAAGGAGACAACATCCGACTGTCCGACGGCTGCGA
CAGCAGAAACAGCGAGATGAGATCCTTTGGCCTCGAGACCCTTTGTACGA
CCAAGAAACGAACGAGAGACTACTACTGTATCATAGCAAGAAGGAAGGGC
GCCACGGAAAATGA
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