mRNA_C-linearis_contig8.15700.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15700.1
Unique NamemRNA_C-linearis_contig8.15700.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15700.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 8.410e-14
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:    2 VAASQDPALTPLPVIGNGDVLSWRDHEERLEQARELQLRQAGAEESQEAGKGYQW 166
            VA SQDPAL PLPVIGNGD+LSWRDHEERLEQARELQ +Q         G+G QW
Sbjct:  546 VAVSQDPALRPLPVIGNGDILSWRDHEERLEQARELQSQQG-------EGEGSQW 593
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK1_ECTSI8.410e-1470.91tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2685515..2686621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size404
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15700.1prot_C-linearis_contig8.15700.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2685558..2686621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.6585085-UTR-C-linearis_contig8:2685514..26855571622930502.6585085-UTR-C-linearis_contig8:2685514..2685557Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2685515..2685557 -
1690881102.8453994-UTR-C-linearis_contig8:2685514..26855571690881102.8453994-UTR-C-linearis_contig8:2685514..2685557Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2685515..2685557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.6766922-CDS-C-linearis_contig8:2685557..26857631622930502.6766922-CDS-C-linearis_contig8:2685557..2685763Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2685558..2685763 -
1690881102.8613272-CDS-C-linearis_contig8:2685557..26857631690881102.8613272-CDS-C-linearis_contig8:2685557..2685763Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2685558..2685763 -
1622930502.688752-CDS-C-linearis_contig8:2686467..26866211622930502.688752-CDS-C-linearis_contig8:2686467..2686621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2686468..2686621 -
1690881102.8752437-CDS-C-linearis_contig8:2686467..26866211690881102.8752437-CDS-C-linearis_contig8:2686467..2686621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2686468..2686621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15700.1

>prot_C-linearis_contig8.15700.1 ID=prot_C-linearis_contig8.15700.1|Name=mRNA_C-linearis_contig8.15700.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=120bp
GCGVSRPGLDPAARDRQRRRLVVEGPRGAPGAGQGAAAAAGGGGGKPGGW
KGISVAHRNQDGGAGDCWAGLHQRVGSGGAGVLSNQSPTDGPSVKAFVIP
RSVRHNSAGERFAAVLVAE*
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mRNA from alignment at C-linearis_contig8:2685515..2686621-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15700.1 ID=mRNA_C-linearis_contig8.15700.1|Name=mRNA_C-linearis_contig8.15700.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1107bp|location=Sequence derived from alignment at C-linearis_contig8:2685515..2686621- (Chordaria linearis ClinC8C monoicous)
GGTTGCGGCGTCTCAAGACCCGGCCTTGACCCCGCTGCCCGTGATCGGCA
ACGGCGACGTCTTGTCGTGGAGGGACCACGAGGAGCGCCTGGAGCAGGCC
AGGGAGCTGCAGCTGCGGCAGGCGGGGGCGGAGGAAAGCCAGGAGGCTGG
AAAGGTCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGTGGAGCATGCTGCATGCTCGCGAGGTCGGACCCCTTGCCTTGC
ACCCTTGCCTTGAACTGTTTCTTTGCCGATGATGTTTTCGCACGCGATGT
TGTGTCCGCCCGCAGCTTGATCATTCTATGTGGGCCCAGTTTACGTAGTA
GAACATGCGAGTGTGGTAAACGCTCGGTTTTTTTTTCGTTCTAGAGCAGT
AGACCCCAACATGCATGCCAAATTGAGAATCGTTTCAAACACGTGTACCG
ACAAAAGTGTACCGGTTGCTGGGGGAGTCGGCAAATTTGGGTGTCTCGGT
GTAGAAACATCAAGAGCAAGCTTGCATTCGTTGGGCGATACGTCCACATT
GCCGGAAAAAATTGTAAAACGTGTCTTGGTTTAGTCTTCAAGGCAGCACA
GAACACGCTGGAGGCCGTGCCGTGGCCCTTAAGAACGAAGGGTTCATATT
TCGAAACGTGGGAACTGTGCTTTGGCCTTGGACGCATGTTGCGACGTGCG
GCGGCGACCATCTGATACCAAAGAAGTATGCAGCGTTGAAACCAGATGGT
TGCTGGCGAGTACACCAAGTAGACCCCGCCCTACCCACCCTCTACTGCAA
ACAAAGAGTTTTGCTGAAACTTGTGCAACTTTTGCTTGTTTTCTCCGCAT
CACGTCAGGGATATCAGTGGCGCATCGCAACCAAGATGGAGGAGCCGGAG
ACTGCTGGGCTGGGCTTCATCAGCGTGTGGGCAGTGGTGGTGCTGGTGTT
CTTTCGAACCAGTCACCCACCGATGGGCCTTCAGTCAAGGCCTTTGTTAT
TCCTCGGTCTGTCAGACATAATAGCGCTGGTGAACGGTTTGCAGCTGTCT
TGGTAGCGGAGTGATTTTTGGCGTAGATGTAGGGGCCCAGTGCGGGGAAG
GAAATGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2685515..2686621-

>mRNA_C-linearis_contig8.15700.1 ID=mRNA_C-linearis_contig8.15700.1|Name=mRNA_C-linearis_contig8.15700.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at C-linearis_contig8:2685515..2686621- (Chordaria linearis ClinC8C monoicous)
GGTTGCGGCGTCTCAAGACCCGGCCTTGACCCCGCTGCCCGTGATCGGCA
ACGGCGACGTCTTGTCGTGGAGGGACCACGAGGAGCGCCTGGAGCAGGCC
AGGGAGCTGCAGCTGCGGCAGGCGGGGGCGGAGGAAAGCCAGGAGGCTGG
AAAGGGTTGCGGCGTCTCAAGACCCGGCCTTGACCCCGCTGCCCGTGATC
GGCAACGGCGACGTCTTGTCGTGGAGGGACCACGAGGAGCGCCTGGAGCA
GGCCAGGGAGCTGCAGCTGCGGCAGGCGGGGGCGGAGGAAAGCCAGGAGG
CTGGAAAGGGATATCAGTGGCGCATCGCAACCAAGATGGAGGAGCCGGAG
ACTGCTGGGCTGGGCTTCATCAGCGTGTGGGCAGTGGTGGTGCTGGTGTT
CTTTCGAACCAGTCACCCACCGATGGGCCTTCAGTCAAGGCCTTTGTTAT
TCCTCGGTCTGTCAGACATAATAGCGCTGGTGAACGGTTTGCAGCTGTCT
TGGTAGCGGAGTGAGGATATCAGTGGCGCATCGCAACCAAGATGGAGGAG
CCGGAGACTGCTGGGCTGGGCTTCATCAGCGTGTGGGCAGTGGTGGTGCT
GGTGTTCTTTCGAACCAGTCACCCACCGATGGGCCTTCAGTCAAGGCCTT
TGTTATTCCTCGGTCTGTCAGACATAATAGCGCTGGTGAACGGTTTGCAG
CTGTCTTGGTAGCGGAGTGA
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