mRNA_C-linearis_contig8.15681.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15681.1
Unique NamemRNA_C-linearis_contig8.15681.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A6H5K2E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E0_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 4.040e-126
Identity = 189/245 (77.14%), Postives = 212/245 (86.53%), Query Frame = 2 
Query:  539 AQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNSTALPA-DVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSPDFLETLRAPYTKGGNEPPLCLETAMGGRNSDGFSGSLAVMKKDRRSK--SAAAAGPLPCPVLITYGTRDVISDSTADSIKHGLSGGEAPVEVKRFDKSGHLAHLDEREEYVTV 1264
            AQHNPVVIIPGGPGLPHDYLETLEGAA +DR+V+LFDP+GTGNS+ALP+ D    S  LLGT SL+AQT AVVD+FK+N FHVLGHGTGAEAALELGRS+GKA+PRPPGPE EA+LSV LASPVLGENELSPDFLE LR PY K GNEPPLCLETAM GR+SDGF+G +A M +DRRSK  +AAAAGPL CPVLITYG RDVI D T   I  GLSGG+APVE +RF++SGHLAHLDEREEYV++
Sbjct:    3 AQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDFFKVNAFHVLGHGTGAEAALELGRSLGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGVAAMNQDRRSKGSAAAAAGPLACPVLITYGKRDVIGDKTVTGITQGLSGGDAPVESRRFEESGHLAHLDEREEYVSL 247
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: D8LLW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLW3_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 4.560e-124
Identity = 188/231 (81.39%), Postives = 204/231 (88.31%), Query Frame = 2 
Query:  443 MDFDEVFVPFKFEEYSGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNSTALPA-DVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSPDFLETLRAPYTKGGNEPPLCLETAMGGRNSDGFSGSLAVMKKDRRSKSAAAA---GPLPCPVLITYG 1123
            MDFDEVF+PFKFE YSGKLFARTVGNGK+QKKAQHNPVVIIPGGPGLPHDYLETLEGAA +DR+V+LFDP+GTGNS+ALP+ D    S  LLGT SL+AQT AVVDYFK+N FHVLGHGT AEAALELGRS+GKA+PRPPGPE EAVLSV LASPVLGENELSPDFLE LR PY K GNEPPLCLETAM GR+SDGF+G LA MK+DRRSK +AAA   GPL CPVLITYG
Sbjct:    1 MDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNAFHVLGHGTSAEAALELGRSLGKASPRPPGPEPEAVLSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGLAAMKQDRRSKGSAAAAGAGPLACPVLITYG 231
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A6H5JXA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA0_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 7.140e-45
Identity = 101/171 (59.06%), Postives = 115/171 (67.25%), Query Frame = 2 
Query:   44 PLFLQAAVTSFLFCLPATAFVPGAVSSVFIQDR--RRECPSATTATEIHEQQRRRHDLRKHRGPS---SLGIVRSGRQARHSGGTQLRE-GGGASNRGEFLDRVAAGTFAAAGCAAAAVGRPEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEYSGKLFARTVGNGKEQKK 538
            P  +Q      L CL + AF PGA+++VF+++R  R +C S +TA   HEQQ          G S   SL   RS RQ +HS  T+LR  GGGAS+R EFL RVAA TFAA     A V  P EAGAFCGEPYPYWAYFMDFDEVFVPFKFE YSGKLFARTVGNGK+QKK
Sbjct:    5 PQLIQLVAVVCLCCLRSVAFTPGAINNVFLRNRQQRDDCCSRSTARRNHEQQ----------GGSISTSLANKRSYRQDQHSRNTELRAAGGGASDRREFLQRVAARTFAAGLATTAVVTGPGEAGAFCGEPYPYWAYFMDFDEVFVPFKFEGYSGKLFARTVGNGKDQKK 165
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A7S3XPS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPS5_HETAK)

HSP 1 Score: 167 bits (422), Expect = 8.830e-43
Identity = 105/325 (32.31%), Postives = 169/325 (52.00%), Query Frame = 2 
Query:  362 GCAAAAVGRPEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEYSGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNSTALPADVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPE-LEAVLSVTLASPVLGENEL--SPDFLETLRAPYTK---------GGN----EPPLCLETAMGGRNSDGFSGSLAVMKKDRRSKSAAAAGPLPCPVLITYGTRDVISDSTADSIKHGLSGGEAP---VEVKRFDKSGHLAHLDEREEYVTVRETTL 1279
            G  AAA      AGA+CG+PYP WAY ++F++  +P++      +L+ R VG+   +K+ +  P++++PGGPGL HDYLETLE  ++  R VVLFDP+GTG S   P       S      SL+ Q + V+    +  +H+  HG  +  ALE  + +      P  P+  + VLSVT  SP     +L  + D LE    P+           GGN    + P+C+E +    +++ +   +  +K       A+    + CP+++TYG RD+IS+++    K   +    P   V +  ++ SGHLAH+DE+E Y+ + +  L
Sbjct:   62 GLVAAAGMNNRPAGAWCGDPYPAWAYTLNFNDGVIPYQ----GSQLYIRVVGDEYYEKRVKRKPLIVLPGGPGLSHDYLETLEAVSQTQRRVVLFDPLGTGQSGPRPPAAASAGS----PRSLLDQLNRVISELGLKEYHLFAHGYSSVVALEKLKQLSTQEDNPGKPKGKQTVLSVTFESPFAKGEDLIEAADALEAKGYPWKTSPNIQSKILGGNPDLKKTPVCMEDSYKTSDAEAYGPEIRALKG---WNCASYVDYVKCPMIVTYGRRDLISETSVTEFKDTFTAPAKPGNEVYLSVYENSGHLAHIDEKETYIQMVQNFL 375
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A835YII1_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.890e-29
Identity = 111/344 (32.27%), Postives = 146/344 (42.44%), Query Frame = 2 
Query:  335 VAAGTFAAAGCAAAAVGRPEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEYSGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNSTALPADVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSPD-FLETLRAPYTKGGNEPPLCLETAM----------------------------------GGRNSDGFSGSLAVMKKDRRSKSAAAAGPLPCPVLITYGTRD-VISDSTADSIKHGLSGGEAPVEVKRFDKSGHLAHLDEREEYV 1258
            V +GT AAA   A A         FCGEPYP WAY +DF+E  VPF+ + + G+LF++              P+V++P   GL H YLETLE AA DDR VVL+DPIGTG S+ALPA             +L  Q  AV+ + ++ ++H+LGHGTGA                         LSVTLASP+L     +PD +   L + +   G   P+CL  A+                                  GGR        L                     V + YG  D  +S S A  I+    G  A         +GHLAHL+ REEY+
Sbjct:   23 VISGTLAAASTTAEA---------FCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPT-------AAPALERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXX-------XXXXALSVTLASPLLRG---TPDGYAAALLSAFD--GRAVPVCLAEAVKEDAAAADAQXXXXXXXXAGGVWEVSTDVEVYKAGGRFKVEVEVCLXXXXXXXXXXXXXXXXXXXXRVGVLYGANDPYVSKSDAQQIRDAAEGALAVA----MPSAGHLAHLERREEYL 321
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A7S2RFF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.050e-24
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 2 
Query:  368 AAAAVGR-PEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEYSG-KLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNST 673
            AAAA+G  P  A AFCGEP+P WAY++ ++E  + F+    S   L+ R  G    +KKAQ  PV++IPGGPGLPHDY ETLEG  K DR VV FDPIGTG ST
Sbjct:    9 AAAALGLLPGVASAFCGEPFPSWAYYIVYNEGLLAFQGPSQSSLDLYLRESGTQDAEKKAQVRPVLLIPGGPGLPHDYFETLEGLVKTDRRVVEFDPIGTGQST 112
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A4D9CNP1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNP1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.110e-24
Identity = 93/318 (29.25%), Postives = 150/318 (47.17%), Query Frame = 2 
Query:  389 PEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEY--SGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNST-ALPADVVEKSSGLLGTMS--------LIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMG--KAAPRPPGPE----LEAVLSVTLASPVLGENELSPDFLETLRAPYTKGGNEPPLCLETAMGGRNSDGFSGSLAVMKK----DRRSKSAAAAGPLPC-PVLITYGT----RDVISDSTADSIKHGLSGG--EAPVEVKRFDKSGHLAHLDEREEYV 1258
            P +A A+CG+PYP WAY + F++  +P        S  LF R VG+ +++K     P++++PGGPGL HDY ETLE     DR VV FDP+GTG S+ +LP  + +   G   T          L  Q   ++ + +I+++HV   G     AL+   +     ++P  P P        V S+TLA P +     +P    +L + Y+  G   PLC+  ++ G    G        +     +R+ +     G +   P+ ++YG+       + ++    ++  +  G  E  V VK+F     L H+DE E YV
Sbjct:   52 PRKAQAWCGKPYPPWAYRLRFNDGLIPVSLPGMAASADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPPALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSYHVWAQGAACLPALQHTAAFAPPSSSPSSPSPSPTSLARGVKSLTLADPFV----FAPGT-RSLPSLYSDRGAAVPLCVTESVAGVKGGGXXXXXXXREDRVHYERQWEGLPELGKVGSRPIFLSYGSTGDGEGSLDEAAVGRLRSRVEEGGREGGVVVKKF--GSRLPHVDEPEAYV 362
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A7S2UVU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVU9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.880e-18
Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = 2 
Query:  494 KLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNSTALPADVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSPDFLE 943
            ++F R VG  + +KK + +P+V++PGGPGL H+YLET+E   + +R VV FDPIG G S+  P D     S      +L +Q  AV D+ ++  +H+  HG G   ALE    + K      G + E V S+ LASP     +   DF+E
Sbjct:   14 QIFIRVVGAERREKKLKLSPLVVVPGGPGLSHNYLETVEAVGQTERRVVFFDPIGAGLSSK-PQD-----SQSASIEALASQIAAVTDFLELKEYHIYAHGFGTLVALERLDQIQKGK----GRKGERVKSIVLASPA----KSGEDFIE 149
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BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: W7TG89_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG89_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.500e-18
Identity = 84/306 (27.45%), Postives = 132/306 (43.14%), Query Frame = 2 
Query:  416 EPYPYWAYFMDFDEVFVPFKFEEYSGK--LFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDRLVVLFDPIGTGNST-ALPADVVEKSSGLLGTMS--------LIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSPDFLETLRAPYTKGGNEPPLCLETAMGGRNSDGFSGSLAVMKKDRRSKSAAAAGPLP-------CPVLITYGTRDVISDSTADSIKHGL-------SGGEAPVEVKRFDKSGHLAHLDEREEYV 1258
            +PYP WAY + F++  +P           LF R VG+ +++K     P++++PGGPGL HDY ETLE     DR VV FDP+GTG S+ +LP  + +   G   T          L  Q   ++ + +I++ HV   G     AL+   +    +  P        L+  + S  L +  +      +L + Y+  G   PLC+  ++ G    G         ++ R         LP        P+ ++YG+     + + D +  G         G E  V VK+F     L H+DE E YV
Sbjct:   51 QPYPPWAYRLRFNDGLIPVSLPGMPAPADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPPALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSHHVWAQGAACLPALQHTAAFAPPSSAPSXXXXXXALARGVKSLTLADPFVFAPGARSLPSLYSDRGAAVPLCVTESVAGVK--GXXXXXXXXXREDRVHYERQWEGLPELGKVGNRPIFLSYGSTGE-GEGSLDEVAVGRLRSRVEEGGREGGVVVKKF--GSRLPHVDEPEAYV 351
[Close]
BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Match: A0A7S4GJC4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJC4_9EUGL)

HSP 1 Score: 94.0 bits (232), Expect = 4.560e-17
Identity = 75/203 (36.95%), Postives = 103/203 (50.74%), Query Frame = 2 
Query:  344 GTFAAAGCAAAAVGRPEEAGAFCGEPYPYWAYFMDFDEVFVPFKFEEYSGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLE--GAAKD----DRLVVLFDPIGTGNST-------ALPADVVEKSSGLLGTMSLIAQTDAVVDYFKINTFHVLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLG 913
            GT  AAG A    GRP    A+CG+PYP W   ++ ++  + FK     G+LF R +G+   + +    PVV++PGGP + HDYLETLE  GA  D    +R V+ +DPIGTG ST       A+                L+A  + V+D  K   FH++ HG+G   ALE       A  R   P L    S+ LASP++G
Sbjct:  177 GTATAAGVAMLG-GRPAATPAWCGDPYPNWTRGININQGTILFK----GGRLFLRVLGDEGREGRQNAYPVVLVPGGPLVSHDYLETLEFLGAPPDRGGRNRRVIEYDPIGTGYSTSGNGAVKAVXXXXXXXXXXXXXXXELLAVLE-VMDLGKGAPFHLVAHGSGCATALE-------ALARGAAPGLR---SLVLASPLVG 363
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2E0_9PHAE4.040e-12677.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLW3_ECTSI4.560e-12481.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXA0_9PHAE7.140e-4559.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XPS5_HETAK8.830e-4332.31Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835YII1_9STRA6.890e-2932.27Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2RFF4_9STRA1.050e-2456.73Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CNP1_9STRA5.110e-2429.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2UVU9_9STRA1.880e-1838.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TG89_9STRA3.500e-1827.45Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S4GJC4_9EUGL4.560e-1736.95Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2534732..2538359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.3
Seed ortholog evalue2.2e-101
Seed eggNOG ortholog2880.D8LLW3
Hectar predicted targeting categorychloroplast
EggNOG OGs2E7EQ@1,2SE0Z@2759
Ec32 ortholog descriptionAlpha/beta hydrolase fold-1
Ec32 orthologEc-14_001920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1656
Cds size1524
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.0369697-UTR-C-linearis_contig8:2534731..25347621622930549.0369697-UTR-C-linearis_contig8:2534731..2534762Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2534732..2534762 +
1690881126.766406-UTR-C-linearis_contig8:2534731..25347621690881126.766406-UTR-C-linearis_contig8:2534731..2534762Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2534732..2534762 +
1622930549.1587963-UTR-C-linearis_contig8:2538258..25383591622930549.1587963-UTR-C-linearis_contig8:2538258..2538359Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2538259..2538359 +
1690881126.8354812-UTR-C-linearis_contig8:2538258..25383591690881126.8354812-UTR-C-linearis_contig8:2538258..2538359Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2538259..2538359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930549.0690446-CDS-C-linearis_contig8:2534762..25352691622930549.0690446-CDS-C-linearis_contig8:2534762..2535269Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2534763..2535269 +
1690881126.7806087-CDS-C-linearis_contig8:2534762..25352691690881126.7806087-CDS-C-linearis_contig8:2534762..2535269Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2534763..2535269 +
1622930549.086822-CDS-C-linearis_contig8:2535774..25359751622930549.086822-CDS-C-linearis_contig8:2535774..2535975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2535775..2535975 +
1690881126.7960162-CDS-C-linearis_contig8:2535774..25359751690881126.7960162-CDS-C-linearis_contig8:2535774..2535975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2535775..2535975 +
1622930549.103852-CDS-C-linearis_contig8:2536375..25366151622930549.103852-CDS-C-linearis_contig8:2536375..2536615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2536376..2536615 +
1690881126.8082323-CDS-C-linearis_contig8:2536375..25366151690881126.8082323-CDS-C-linearis_contig8:2536375..2536615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2536376..2536615 +
1622930549.1213934-CDS-C-linearis_contig8:2537125..25372711622930549.1213934-CDS-C-linearis_contig8:2537125..2537271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2537126..2537271 +
1690881126.8168435-CDS-C-linearis_contig8:2537125..25372711690881126.8168435-CDS-C-linearis_contig8:2537125..2537271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2537126..2537271 +
1622930549.1388485-CDS-C-linearis_contig8:2537828..25382581622930549.1388485-CDS-C-linearis_contig8:2537828..2538258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2537829..2538258 +
1690881126.8257294-CDS-C-linearis_contig8:2537828..25382581690881126.8257294-CDS-C-linearis_contig8:2537828..2538258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2537829..2538258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15681.1prot_C-linearis_contig8.15681.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2534763..2538258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15681.1

>prot_C-linearis_contig8.15681.1 ID=prot_C-linearis_contig8.15681.1|Name=mRNA_C-linearis_contig8.15681.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=508bp
MAPLPLFLQAAVTSFLFCLPATAFVPGAVSSVFIQDRRRECPSATTATEI
HEQQRRRHDLRKHRGPSSLGIVRSGRQARHSGGTQLREGGGASNRGEFLD
RVAAGTFAAAGCAAAAVGRPEEAGAFCGEPYPYWAYFMDFDEVFVPFKFE
EYSGKLFARTVGNGKEQKKAQHNPVVIIPGGPGLPHDYLETLEGAAKDDR
LVVLFDPIGTGNSTALPADVVEKSSGLLGTMSLIAQTDAVVDYFKINTFH
VLGHGTGAEAALELGRSMGKAAPRPPGPELEAVLSVTLASPVLGENELSP
DFLETLRAPYTKGGNEPPLCLETAMGGRNSDGFSGSLAVMKKDRRSKSAA
AAGPLPCPVLITYGTRDVISDSTADSIKHGLSGGEAPVEVKRFDKSGHLA
HLDEREEYVTVRETTLSVRVLGRSALVACCERYSRWYREGVRRWTNRTSP
RLNFLHWLGSRLGTDFAVLPPPFRVFYKSKRQNGIKERTSPQRDKSLSGG
LTVQYRQ*
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mRNA from alignment at C-linearis_contig8:2534732..2538359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15681.1 ID=mRNA_C-linearis_contig8.15681.1|Name=mRNA_C-linearis_contig8.15681.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3628bp|location=Sequence derived from alignment at C-linearis_contig8:2534732..2538359+ (Chordaria linearis ClinC8C monoicous)
CACACCTCCGTCCGCCCACCTGCACAGCTACATGGCTCCTCTACCTCTGT
TTCTACAAGCGGCGGTCACGTCTTTCCTCTTCTGCTTGCCAGCAACTGCG
TTCGTACCTGGAGCAGTCTCCTCTGTGTTCATCCAAGATCGGCGACGAGA
ATGTCCAAGTGCAACCACGGCAACGGAGATACATGAGCAGCAGCGGCGGC
GGCACGACCTACGAAAGCATCGTGGCCCGTCCTCGCTGGGGATCGTACGC
AGTGGTAGACAAGCTAGACACTCTGGCGGCACACAGCTAAGAGAGGGTGG
CGGGGCTAGTAACCGAGGGGAGTTCTTGGACCGAGTTGCCGCGGGGACGT
TCGCTGCGGCGGGATGTGCGGCCGCCGCCGTCGGTAGGCCCGAGGAAGCC
GGGGCATTTTGCGGTGAACCCTACCCGTACTGGGCCTATTTCATGGACTT
CGACGAGGTCTTTGTTCCGTTTAAATTCGAGGAGTACTCCGGCAAGTTGT
TCGCGAGAACCGTCGGGAACGGCAAGGAGCAGAAGAAGGTGCGATAACGG
ACAACAACTTTTAGGCTGTGTACAGGTATAGGGTCAGCTGCACGGATCTA
CGCATGCTCCGATTTGTCGGTACAAAGGCATGCACTACAAAAACTTCGTG
CTGTTGACGTCTTCTTGATGGGAGGGTTTTACTGCAGTTCTGACTACGTA
CACACCTTTGCCCTCTTGCTTGTGGGGCCTCTGAACTCTTGAAACCATCG
CGCACATCGGTCTTCTTCGTAACGTCATGCACTGCTGGATGTACGTAGCA
CGCAAGTAGGTGCAGCTATGTTGGCTCGCCGACACACAGGAATGCCATTT
GATCTTATGAAGGGAGGGAGGGAGGGTTACGGGGTCAGCACGTGCACAGC
AGGACAGCAGACCTGCAATCTTGCCCTGATGCCGTTTCATGCGCCCCGTT
TCTTTGCCTGTCCTGCTTCAAATCGTCCTCTCCGCTACTGCCAACTTTGT
GTGTAACCCCCACACCACGACAACGATCCCAAAATCAACCCAGGCTCAGC
ACAACCCCGTGGTAATCATCCCGGGAGGCCCAGGGTTACCCCACGACTAC
CTCGAGACGCTGGAGGGAGCAGCCAAGGACGACAGGCTCGTGGTACTGTT
CGACCCCATTGGCACGGGCAATTCTACCGCTCTCCCAGCCGACGTTGTGG
AGAAATCATCTGGTCTCCTCGGGACTATGTCCCTCATCGCGCAGGTGACG
GTGGAGTGTTCGAACTGCAATCCCACGTCGACCTTCCGTTTCTTCAAAGA
GAAATGCGGGTTTTCCGGAACGATAAAAGGGGTCGGAGATTCCTTTGCGC
CTGACACTACAGGCACGCTGCCCTTGTCCATTGTTCAGCACATCGAGGAG
TCGAAGGTTTCAATTGGAAGGTTTTTACGAATCCTTGAGCGCTCTTTATT
GTAGTCGTACTGCTGTAGCTCTACTTTCGCGGCACTTTTTCGTGCGAGTC
GTTCGCAGTTGCGACTGAGGGAAAAAGGAAAAAATGTTGTTTTAGTCTGT
ATTTTGCTCACGAACCTTTTGTTCAATGTCCCCCACCCCCTTCCCGATAC
ACACGGGGTTGTCCGCTCTTATGCTCCATCTTCCGCAAAGAAAGACCGAC
GCGGTCGTGGATTACTTTAAAATCAACACATTCCACGTGCTAGGGCATGG
TACCGGGGCAGAAGCGGCGCTCGAGCTGGGCAGAAGCATGGGGAAGGCGG
CCCCGCGCCCCCCAGGACCGGAGCTGGAAGCGGTGCTTTCGGTGACGCTG
GCCAGCCCAGTGTTGGGGGAAAACGAGCTGTCGCCCGACTTCCTGGAGAC
TCTTCGGGCTCCATACACCAAGGGCGGGAACGAGGTTCGTCTTTCCGTAT
GATCCCCCACGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGATGAA
CATCGCTTGCTGTTTGACCTGGTGCTGGATTCAACACGGGCCGAAGATAG
CATCAGGGGTGTGAATGTAGTCTTTCTGAGTCGAATCCGATGTTTTGAAT
GGTCGGTTGGTTTCCCGTTTTTGAGTTCTGCACAAAGCAGTTCTGCCTCT
GCATCGCTGTGTCCTGCCCGCAGAGAGAACGTCTGCGGTAGGACTCGCGC
GTTTGAAACGAAAGATTGAGTCGCTACGCTGCACACGCGCACGACTTGCC
GGGCAACACCCCAAAGTCCGCAGTATTTGTTCACTCGCGGGATTGCGCAA
CAACTGCTTGCTGTGGGACAGGTTCCATGTCGCTGACGCCTGTCGGCGCC
CCCTATTGTTTTCTTTTCTTTCTTCTTTTCTTCTTTTGTTTCCCTTTATT
CTTTGGTTTGCTTTTTTCACCTTGCTGCTTTTCGCTTTTCACAGCCTCCT
CTGTGTCTTGAGACCGCGATGGGTGGCCGAAATTCTGACGGATTCAGTGG
AAGCCTCGCCGTCATGAAGAAGGACCGGCGATCAAAAAGCGCGGCGGCGG
CAGGGCCGCTACCATGCCCCGTACTCATCACGTATGGAACGTAAGTTTTG
AGACACACCTGTGCTTCCAAGTCAGCTATTACTTCGTATATTGTTAAACA
GGCATGCGGAGCGTATTTTTGGTGGCTCGATGGGACCGCCGTACAGCAGG
TGTGCGATGCACACGTTCCGCCTGGTGCGCCCTAGGGACAATATTTTCAA
CAAATCTGCAGCCTGACGATGCAACTTCCATGTAGCTGGTGCTATTGGTA
CTGCTGTGCCGCTTACTGCATGTGGTTTCTGTGCTCTGCACTCGTGTCCA
AGGGTCTCGCCGCCCCGCGCGTTTCCCCTGCAACGCTGATACGGGTTTTC
GCGATTGGCCCTTATCAACTTATCGGTCTAAATAGTTTAACCTTACCAGC
AACGCTATGAAGGCCTTACTAACACAGCCCTCCGTAGTACAGCAGTGGTA
GTCGACCAAGAACCTTTCCTTGAGTGCTGCCAAGACGCACGAGCCGCTCT
TTGCTGCGCCTACCCTCGCGTTGCCTTTTTTGGTCCTTCTTGCCACCGGA
CTTAATGTAACTCGATATGGCGATGTCATGTTCTGTGGTATTGGCAGGCG
GGACGTGATTAGCGACAGTACTGCCGATAGCATCAAGCACGGGTTGTCAG
GGGGTGAAGCTCCTGTCGAGGTCAAGCGGTTCGACAAGAGCGGCCACCTG
GCGCATCTCGACGAGAGAGAGGAGTACGTCACGGTGAGAGAGACGACGCT
AAGTGTGAGGGTGCTAGGGAGGAGCGCGTTGGTTGCATGTTGCGAGAGAT
ATTCGCGTTGGTATCGAGAAGGGGTTCGAAGGTGGACCAATCGAACGTCA
CCGCGTTTGAACTTCCTGCACTGGCTAGGTTCGCGCCTGGGTACAGACTT
TGCAGTGCTCCCTCCTCCTTTCCGTGTTTTTTATAAATCAAAACGGCAAA
ACGGCATCAAAGAAAGAACCTCCCCTCAAAGAGACAAATCCCTAAGTGGC
GGATTAACAGTTCAATACAGACAGTGACGTAATATGGGATAGGTGGAGAA
GAAAAGCACCTAAAACTGGGAAAACGTCATAAACCTCCCCTGCAACGCTC
TGCCGGGTCAACAGCAAATATATCGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2534732..2538359+

>mRNA_C-linearis_contig8.15681.1 ID=mRNA_C-linearis_contig8.15681.1|Name=mRNA_C-linearis_contig8.15681.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3048bp|location=Sequence derived from alignment at C-linearis_contig8:2534732..2538359+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCCTCTACCTCTGTTTCTACAAGCGGCGGTCACGTCTTTCCTCTT
CTGCTTGCCAGCAACTGCGTTCGTACCTGGAGCAGTCTCCTCTGTGTTCA
TCCAAGATCGGCGACGAGAATGTCCAAGTGCAACCACGGCAACGGAGATA
CATGAGCAGCAGCGGCGGCGGCACGACCTACGAAAGCATCGTGGCCCGTC
CTCGCTGGGGATCGTACGCAGTGGTAGACAAGCTAGACACTCTGGCGGCA
CACAGCTAAGAGAGGGTGGCGGGGCTAGTAACCGAGGGGAGTTCTTGGAC
CGAGTTGCCGCGGGGACGTTCGCTGCGGCGGGATGTGCGGCCGCCGCCGT
CGGTAGGCCCGAGGAAGCCGGGGCATTTTGCGGTGAACCCTACCCGTACT
GGGCCTATTTCATGGACTTCGACGAGGTCTTTGTTCCGTTTAAATTCGAG
GAGTACTCCGGCAAGTTGTTCGCGAGAACCGTCGGGAACGGCAAGGAGCA
GAAGAAGATGGCTCCTCTACCTCTGTTTCTACAAGCGGCGGTCACGTCTT
TCCTCTTCTGCTTGCCAGCAACTGCGTTCGTACCTGGAGCAGTCTCCTCT
GTGTTCATCCAAGATCGGCGACGAGAATGTCCAAGTGCAACCACGGCAAC
GGAGATACATGAGCAGCAGCGGCGGCGGCACGACCTACGAAAGCATCGTG
GCCCGTCCTCGCTGGGGATCGTACGCAGTGGTAGACAAGCTAGACACTCT
GGCGGCACACAGCTAAGAGAGGGTGGCGGGGCTAGTAACCGAGGGGAGTT
CTTGGACCGAGTTGCCGCGGGGACGTTCGCTGCGGCGGGATGTGCGGCCG
CCGCCGTCGGTAGGCCCGAGGAAGCCGGGGCATTTTGCGGTGAACCCTAC
CCGTACTGGGCCTATTTCATGGACTTCGACGAGGTCTTTGTTCCGTTTAA
ATTCGAGGAGTACTCCGGCAAGTTGTTCGCGAGAACCGTCGGGAACGGCA
AGGAGCAGAAGAAGGCTCAGCACAACCCCGTGGTAATCATCCCGGGAGGC
CCAGGGTTACCCCACGACTACCTCGAGACGCTGGAGGGAGCAGCCAAGGA
CGACAGGCTCGTGGTACTGTTCGACCCCATTGGCACGGGCAATTCTACCG
CTCTCCCAGCCGACGTTGTGGAGAAATCATCTGGTCTCCTCGGGACTATG
TCCCTCATCGCGCAGGCTCAGCACAACCCCGTGGTAATCATCCCGGGAGG
CCCAGGGTTACCCCACGACTACCTCGAGACGCTGGAGGGAGCAGCCAAGG
ACGACAGGCTCGTGGTACTGTTCGACCCCATTGGCACGGGCAATTCTACC
GCTCTCCCAGCCGACGTTGTGGAGAAATCATCTGGTCTCCTCGGGACTAT
GTCCCTCATCGCGCAGACCGACGCGGTCGTGGATTACTTTAAAATCAACA
CATTCCACGTGCTAGGGCATGGTACCGGGGCAGAAGCGGCGCTCGAGCTG
GGCAGAAGCATGGGGAAGGCGGCCCCGCGCCCCCCAGGACCGGAGCTGGA
AGCGGTGCTTTCGGTGACGCTGGCCAGCCCAGTGTTGGGGGAAAACGAGC
TGTCGCCCGACTTCCTGGAGACTCTTCGGGCTCCATACACCAAGGGCGGG
AACGAGACCGACGCGGTCGTGGATTACTTTAAAATCAACACATTCCACGT
GCTAGGGCATGGTACCGGGGCAGAAGCGGCGCTCGAGCTGGGCAGAAGCA
TGGGGAAGGCGGCCCCGCGCCCCCCAGGACCGGAGCTGGAAGCGGTGCTT
TCGGTGACGCTGGCCAGCCCAGTGTTGGGGGAAAACGAGCTGTCGCCCGA
CTTCCTGGAGACTCTTCGGGCTCCATACACCAAGGGCGGGAACGAGCCTC
CTCTGTGTCTTGAGACCGCGATGGGTGGCCGAAATTCTGACGGATTCAGT
GGAAGCCTCGCCGTCATGAAGAAGGACCGGCGATCAAAAAGCGCGGCGGC
GGCAGGGCCGCTACCATGCCCCGTACTCATCACGTATGGAACCCTCCTCT
GTGTCTTGAGACCGCGATGGGTGGCCGAAATTCTGACGGATTCAGTGGAA
GCCTCGCCGTCATGAAGAAGGACCGGCGATCAAAAAGCGCGGCGGCGGCA
GGGCCGCTACCATGCCCCGTACTCATCACGTATGGAACGCGGGACGTGAT
TAGCGACAGTACTGCCGATAGCATCAAGCACGGGTTGTCAGGGGGTGAAG
CTCCTGTCGAGGTCAAGCGGTTCGACAAGAGCGGCCACCTGGCGCATCTC
GACGAGAGAGAGGAGTACGTCACGGTGAGAGAGACGACGCTAAGTGTGAG
GGTGCTAGGGAGGAGCGCGTTGGTTGCATGTTGCGAGAGATATTCGCGTT
GGTATCGAGAAGGGGTTCGAAGGTGGACCAATCGAACGTCACCGCGTTTG
AACTTCCTGCACTGGCTAGGTTCGCGCCTGGGTACAGACTTTGCAGTGCT
CCCTCCTCCTTTCCGTGTTTTTTATAAATCAAAACGGCAAAACGGCATCA
AAGAAAGAACCTCCCCTCAAAGAGACAAATCCCTAAGTGGCGGATTAACA
GTTCAATACAGACAGTGAGCGGGACGTGATTAGCGACAGTACTGCCGATA
GCATCAAGCACGGGTTGTCAGGGGGTGAAGCTCCTGTCGAGGTCAAGCGG
TTCGACAAGAGCGGCCACCTGGCGCATCTCGACGAGAGAGAGGAGTACGT
CACGGTGAGAGAGACGACGCTAAGTGTGAGGGTGCTAGGGAGGAGCGCGT
TGGTTGCATGTTGCGAGAGATATTCGCGTTGGTATCGAGAAGGGGTTCGA
AGGTGGACCAATCGAACGTCACCGCGTTTGAACTTCCTGCACTGGCTAGG
TTCGCGCCTGGGTACAGACTTTGCAGTGCTCCCTCCTCCTTTCCGTGTTT
TTTATAAATCAAAACGGCAAAACGGCATCAAAGAAAGAACCTCCCCTCAA
AGAGACAAATCCCTAAGTGGCGGATTAACAGTTCAATACAGACAGTGA
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