mRNA_C-linearis_contig8.15680.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15680.1
Unique NamemRNA_C-linearis_contig8.15680.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A6H5K120_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K120_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 8.680e-138
Identity = 255/366 (69.67%), Postives = 282/366 (77.05%), Query Frame = 1
Query:   73 MARSMLTYALCVCQLVTTAAFL-SSPKIAPVLVS-PSSSHSPL-----------QRPKLPHAVVQRQTGRTAVAS--LPRRHRIQQQARDCEALGIDNELTVPRTLESGRNTAVEETGSSCRSQASRRSLATPRFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKA---MLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGK-GGNKASDFSSK 1113
            M+RS+ TY+L    L    AFL SSPK+AP+  + P SS+SPL           Q  +L H   +R TGR A  +   P  H  Q Q RD        E   P    +G +T   ET S     + ++ L TPRFAAL ASAL  GLAV+VLAPG A+AAVKA VAGSEDE HLH+GQKVA  FR+GGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIP+ILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKA   MLSIFLGV+SAG+IMSCLTLAGKAGALVATAVLAVFCV+++LGGG+ GGNKASDF+SK
Sbjct:    1 MSRSIFTYSLFFSHLAMATAFLASSPKVAPLFTTQPLSSYSPLRSLEQRAPRRQQSLQLSHEATKRATGRAATVAHVAPGHHSRQAQGRDAP------EHERPVVASAGLSTFEMET-SPTGLPSRKKPLFTPRFAALTASALAVGLAVSVLAPGTASAAVKAIVAGSEDEAHLHVGQKVAKFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPIILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKASKAMLSIFLGVVSAGVIMSCLTLAGKAGALVATAVLAVFCVTNMLGGGEDGGNKASDFASK 359          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A835YGM4_9STRA (Putative small multi-drug export protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM4_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.410e-75
Identity = 136/199 (68.34%), Postives = 159/199 (79.90%), Query Frame = 1
Query:  478 VLAPGPAAAAVKA--AVAGSEDEVHLHLGQKVANLFRQ-GGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSI 1065
            +L P  A AAV+   A A +  E HLH+GQK+A   R  G LPDW T+  ISAMPVVELRGG+PVG+WMG+PIAKVFGLCVAGNM+PIP+ILLALRSS VQ + KP LDRAR KA  FGD + QA+AL LFVGIPLPGTGAWTGAM A +LGMP  K++ +IF GV+SAG IM+ LTLAGKAGA+ ATAVLA+FCV+SI
Sbjct:    1 MLQPERALAAVRVVTAAAAAAPEEHLHVGQKIAMYCRTTGNLPDWLTIALISAMPVVELRGGIPVGLWMGLPIAKVFGLCVAGNMVPIPLILLALRSSAVQNVLKPFLDRARSKAKEFGDAEKQAVALLLFVGIPLPGTGAWTGAMIASILGMPVAKSLAAIFAGVVSAGAIMTALTLAGKAGAIAATAVLAIFCVTSI 199          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S1UT50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT50_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.710e-59
Identity = 114/181 (62.98%), Postives = 133/181 (73.48%), Query Frame = 1
Query:  544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGK 1080
            HLH+GQK+AN FR  GLPD   L  ISA+PVVELRG VPVG+WMG+PI  V   CV GNMIPI  ILL LR+  ++KL +P+L RA +K+A  G G  + Q  +L  FVGIPLPGTGAWTGAMGAFLLGMPF  A+ SIF GV+SAG+IMS LTLAG+ GAL A A LA+F     LGG K
Sbjct:   65 HLHVGQKIANYFRSFGLPDTVILAIISALPVVELRGAVPVGVWMGLPITTVLPACVFGNMIPIVPILLLLRNERLKKLMEPILSRAEKKSASLGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPFAVALSSIFTGVVSAGVIMSALTLAGRKGALAALAALALFTSKEFLGGPK 245          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2Y2N1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2N1_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.190e-59
Identity = 122/200 (61.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query:  448 SALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAV 1047
            +ALV   AVAV  P  A+AA   + A S +E HLHLGQK+AN FR+ GLPD   LM ISAMPVVELRGG+PVG WMG+P+  V  LCV GN+IPI  +L AL++  +QK+ KPVLDRA EK+ G G EK+++LA+ LFVGIPLPGTGAWTGAMGAFLLGM F+++  +I  GVL AG+IMS L  AGK GA+ AT  + V
Sbjct:  130 AALVIMAAVAVK-PLSASAAEALSTAVSAEE-HLHLGQKIANQFRKTGLPDEVVLMIISAMPVVELRGGIPVGQWMGLPLLNVLALCVVGNLIPIIPLLAALKNKTIQKVMKPVLDRAAEKSKGLGSEKNRSLAVALFVGIPLPGTGAWTGAMGAFLLGMGFRESASAISAGVLLAGIIMSILVKAGKTGAIAATVAMIV 327          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A6S8U4Q8_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8U4Q8_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.360e-56
Identity = 120/207 (57.97%), Postives = 144/207 (69.57%), Query Frame = 1
Query:  466 LAVAVLAPGPAAAAVKAAVAGSEDEV--HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREK--AAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGG 1074
            +A+   A  PAA A K++   +  EV  HLH GQKVAN FR  G+PD A L  ISAMPV+ELRG VPVGIWMG+PI KV   CV GNM+PI  +L  L++  ++KL KP+LDRA +K  A G G  + Q  +L  FVGIPLPGTGAWTGAMGAFLLGMP  +A+ SIF GV+SAG+IMS +TLAGK G L A A+LA       LGG
Sbjct:  107 MAIVTSAAPPAALAAKSSAIAAAPEVVEHLHTGQKVANFFRSFGIPDLAILSIISAMPVIELRGAVPVGIWMGLPITKVLPACVFGNMVPIIPLLFLLKNETLKKLMKPILDRAEKKSSALGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTARAISSIFTGVVSAGLIMSAITLAGKKGGLAALAILAAVTGKEFLGG 313          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2C209_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C209_9EUKA)

HSP 1 Score: 195 bits (495), Expect = 2.860e-54
Identity = 119/213 (55.87%), Postives = 144/213 (67.61%), Query Frame = 1
Query:  427 RFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSI 1065
            RF A AA+AL   L VA     PA A     + G+    HLH GQK+A  FR+ GLPDWATL+ ISA+P VELRGGVPVG WMG+       +C+ GNM+PI  ILLA RS FV+   KP++ RA +K AG    +S+ LAL LFVG+P PGTGAWTGA  ++LLGMPF  AM +IF GV+ AGMIM+ LTLAGK GALVA A L  F + +I
Sbjct:   53 RFGAAAATALPLMLGVA----RPALALASGGIEGA----HLHTGQKIALYFRKFGLPDWATLVLISAVPGVELRGGVPVGNWMGLSPWATLIICILGNMLPIAPILLAFRSDFVKAKLKPLITRAEKKLAGLPKGQSRELALALFVGVPAPGTGAWTGATISYLLGMPFGTAMGAIFAGVVIAGMIMTVLTLAGKLGALVALAALMTFGIGAI 257          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S4AR77_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4AR77_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.950e-54
Identity = 121/218 (55.50%), Postives = 150/218 (68.81%), Query Frame = 1
Query:  457 VAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFG--DEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGKGGNKASDF 1104
            VA +A+  L   PA AA K AVA    E HLH GQK+AN F   GLP WA L  ISAMPVVELRG +PVG+WMG+PI +VF +CV GNM+PI  +L  L++  ++KL  P+L RA +K+AG G  D K Q ++L  FVGIPLPGTGAWTGAMGAFLLGMP   A+ +IF GV SAG IM+ LTLAG+ G +VA +VL  F ++ +    K   +A DF
Sbjct:   97 VALVALTFLTSSPAFAA-KTAVAADPVE-HLHTGQKIANFFINFGLPKWAVLSVISAMPVVELRGAIPVGVWMGLPIEQVFPICVLGNMVPIVPLLFLLKNPTLKKLMGPILRRAEKKSAGLGGGDVKKQWVSLAAFVGIPLPGTGAWTGAMGAFLLGMPTPVALSAIFAGVFSAGCIMTALTLAGRKGGIVALSVLIAFAINELFF--KKSEQAQDF 310          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A1E7FFY0_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFY0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.320e-54
Identity = 122/228 (53.51%), Postives = 154/228 (67.54%), Query Frame = 1
Query:  391 RSQASRRSLATPRFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFG--DEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSIL 1068
            R+ A  ++L+  +F   +A ALV       L   PA AA KA V   E   HLH GQK+AN F   GLP WA L TISAMPVVELRG +PVG+WMG+PI +V   CV GNMIPI  +L  L++  ++KL  P+L+RA +KAAG G    + Q ++L  FVGIPLPGTGAWTGAMG+FLLGMP   A+ SIF GV+SAG+IM+ LTLAG+ G L+A +VL  F  + +L
Sbjct:   86 RANAKSKTLSMSKFLKTSAMALV----TLSLLTSPAFAAKKAVV---ETVEHLHTGQKIANFFMSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKNPSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAGRTGGLIAISVLIAFAANEVL 306          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2S836_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S836_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.520e-54
Identity = 106/170 (62.35%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAV 1047
            HLH+GQKVAN FR  G+PD A L  ISA+PV+ELRG VPVG+WMG+PI  V   CV GNM+PI  +L  LR+  ++KL KP+L RA +K+A  G G  + Q  +L  FVGIPLPGTGAWTGAMGAFLLGMP   A+ SIF GV+SAG+IMS LTLAGK G + A AVLA+
Sbjct:  137 HLHVGQKVANYFRSFGIPDVAILALISALPVIELRGAVPVGLWMGLPITTVLPACVMGNMLPIIPLLFLLRNEKLKKLMKPILTRAEKKSASLGVGSVEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTALAISSIFTGVVSAGLIMSALTLAGKKGGIAALAVLAI 306          
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S1ZZ20_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ20_TRICV)

HSP 1 Score: 192 bits (488), Expect = 4.550e-54
Identity = 104/180 (57.78%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGG 1077
            HLH+GQKVAN FR  GLPD A L  ISAMPV+ELRG VPVG+WMG+P+  V   CV GNM+PI  ++  LR+  ++KL  P+L RA +K+A  G G  + Q  +L  FVGIPLPGTGAWTGAMGAFLLGMP   A+ +IF GV+SAG+IMS +TLAGK G + A A LA+      L  G
Sbjct:   24 HLHVGQKVANYFRTFGLPDTAILALISAMPVIELRGAVPVGLWMGLPLTTVLPACVMGNMVPIVPLMFLLRNEKLKKLMSPILSRAEKKSASLGVGSLEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTGLALSAIFTGVVSAGVIMSAITLAGKKGGIAALAALALITGREFLASG 203          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K120_9PHAE8.680e-13869.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGM4_9STRA3.410e-7568.34Putative small multi-drug export protein-domain-co... [more]
A0A7S1UT50_9STRA2.710e-5962.98Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2Y2N1_9STRA4.190e-5961.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8U4Q8_9STRA4.360e-5657.97Ferredoxin--NADP(+) reductase n=2 Tax=Chaetoceros ... [more]
A0A7S2C209_9EUKA2.860e-5455.87Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4AR77_9STRA2.950e-5455.50Ferredoxin--NADP(+) reductase n=2 Tax=Pseudo-nitzs... [more]
A0A1E7FFY0_9STRA3.320e-5453.51Ferredoxin--NADP(+) reductase n=1 Tax=Fragilariops... [more]
A0A7S2S836_9STRA4.520e-5462.35Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1ZZ20_TRICV4.550e-5457.78Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2532488..2534633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue3.9e-113
Seed eggNOG ortholog2880.D8LLW4
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Putative small multi-drug export protein
EggNOG OGs28NC2@1,2QUXG@2759
Ec32 ortholog descriptionPutative small multi-drug export
Ec32 orthologEc-14_001930.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1835
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15680.1prot_C-linearis_contig8.15680.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2533207..2534561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930548.9449804-UTR-C-linearis_contig8:2532487..25332061622930548.9449804-UTR-C-linearis_contig8:2532487..2533206Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2532488..2533206 -
1690881126.72114-UTR-C-linearis_contig8:2532487..25332061690881126.72114-UTR-C-linearis_contig8:2532487..2533206Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2532488..2533206 -
1622930548.9998825-UTR-C-linearis_contig8:2534561..25346331622930548.9998825-UTR-C-linearis_contig8:2534561..2534633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2534562..2534633 -
1690881126.7566886-UTR-C-linearis_contig8:2534561..25346331690881126.7566886-UTR-C-linearis_contig8:2534561..2534633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2534562..2534633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930548.969427-CDS-C-linearis_contig8:2533206..25333831622930548.969427-CDS-C-linearis_contig8:2533206..2533383Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2533207..2533383 -
1690881126.7327945-CDS-C-linearis_contig8:2533206..25333831690881126.7327945-CDS-C-linearis_contig8:2533206..2533383Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2533207..2533383 -
1622930548.9840722-CDS-C-linearis_contig8:2533694..25345611622930548.9840722-CDS-C-linearis_contig8:2533694..2534561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2533695..2534561 -
1690881126.7415562-CDS-C-linearis_contig8:2533694..25345611690881126.7415562-CDS-C-linearis_contig8:2533694..2534561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2533695..2534561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15680.1

>prot_C-linearis_contig8.15680.1 ID=prot_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=348bp
MARSMLTYALCVCQLVTTAAFLSSPKIAPVLVSPSSSHSPLQRPKLPHAV
VQRQTGRTAVASLPRRHRIQQQARDCEALGIDNELTVPRTLESGRNTAVE
ETGSSCRSQASRRSLATPRFAALAASALVAGLAVAVLAPGPAAAAVKAAV
AGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIW
MGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGF
GDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLS
AGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGKGGNKASDFSSK*
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mRNA from alignment at C-linearis_contig8:2532488..2534633-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15680.1 ID=mRNA_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2146bp|location=Sequence derived from alignment at C-linearis_contig8:2532488..2534633- (Chordaria linearis ClinC8C monoicous)
AGGCGCCTCAGCAACACCCGCTGACACCGCGCACGACCACAAACTAAAGC GCACTGTTCTGTCCTAGCCATCATGGCTAGATCGATGCTTACCTATGCGT TGTGCGTCTGTCAGTTGGTGACGACAGCGGCCTTTCTGAGTTCCCCGAAA ATCGCGCCGGTGCTGGTTTCGCCATCGTCGTCCCACTCGCCGCTCCAGCG CCCCAAGCTGCCGCACGCAGTAGTGCAGCGACAGACGGGTCGTACTGCGG TGGCTTCTCTGCCCCGTCGCCACCGAATCCAGCAGCAGGCACGGGATTGC GAAGCCCTAGGAATCGACAACGAGTTGACAGTCCCGCGAACGCTGGAGTC GGGGCGAAACACTGCCGTTGAAGAAACTGGCAGCAGCTGTCGATCGCAGG CTTCGCGGAGGTCGCTCGCCACCCCTCGGTTCGCAGCGTTGGCTGCGTCT GCGCTCGTGGCAGGGCTGGCCGTGGCGGTGCTCGCGCCGGGCCCCGCAGC GGCAGCGGTCAAGGCGGCAGTCGCGGGGAGCGAGGACGAGGTTCACCTGC ACCTTGGGCAGAAGGTCGCCAACCTTTTCCGGCAAGGCGGCCTGCCAGAC TGGGCGACGCTCATGACGATCTCCGCGATGCCAGTGGTCGAGCTGCGCGG CGGGGTCCCCGTGGGCATCTGGATGGGCATGCCGATCGCGAAGGTCTTCG GGCTGTGCGTCGCGGGCAACATGATCCCCATCCCCGTCATCCTGCTCGCG CTCCGGTCCTCCTTCGTCCAGAAGCTTGCCAAGCCCGTGCTGGACCGCGC CCGCGAGAAGGCGGCTGGGTTCGGCGACGAAAAGAGCCAGGCCCTAGCGC TGACGCTGTTTGTGGGTATCCCGCTCCCTGGTACGGGGGCGTGGACTGGG GCCATGGGGGCGTTTTTGCTGGGTATGCCGTTCCAGAAGGTGAGGGAACG CGGGCGGGTGCTTTGCAAGTACCAGGTACAGGATACCTGCTGTTAGAGGG AAGACAGCAGTTCAAGCCTTTGTACATAGATGTTCTCCGTATACCGTGTT CAACAGATTTATCGCTTGGCCCATTTTTTGCGGCTGATATGCATATGTAT GTGTGTCCACAACTCCGGGTCCAGGGTCTGAAGGTCGTCGAGAGTGTAGC ATATCCGCGCCAAGACGTCTGAAACAGCAGTGACCTTGCAAAAACATAAA CGCAACTGGCCATCAACCCATCTCCTGCCAAACGTGTCTACGGCGCGCAG GCAATGCTGTCAATCTTCCTCGGAGTACTGAGCGCCGGCATGATCATGAG CTGCCTCACCCTCGCAGGGAAGGCCGGAGCCCTGGTAGCAACGGCCGTTC TGGCCGTGTTTTGCGTGTCTAGCATACTGGGGGGAGGAAAGGGAGGAAAC AAAGCGTCGGATTTCTCGTCCAAGTAGTGGGTGAACGACACTATGAGATG GGAAGCGAACAAATTTCTGTTGAAAATCATGCGGCCTCAACGGTCGTCTC TCAGTGTAAATGGCGGTGCTGCGAGAAGTGGCTGATTTCTAGGCATTTTT TTCGCGGCTCATGGCGGGTACCGAGGTTTTTGTTGGTAGAAACTTAAAGG ATGGTTGATGTTTTCCATGGCTGTTGCTTGTCGCGCGGTGTTGAAATGTG AGTGAAAAGGTTTCGCGGCTCAGCAGCGCCAATGGGAGTAAATTGGGTGG GTGTTTCTTCCCCTTTCCTTCCTTCTTCGTCGCTCATGCTGGGAGTCGTC AGGGATCCCCTGCTGTCTTCTATCGGTCTCCGTTAGAAGGTGTTGTCTGT TCTTCTGTTCTTGAAATAGTTCTTCACGGCCGTTTTGCCTCGGGAGGCTT CAGGCTGAAAGAGCGGCGCATTCGACGCCCCTTGTCCTCTGGATGTAGGT TTTACAACTACGCACCGGCCTGGTGCTCCTCCGCACGAGCAGTGCGAAGG CTGAGCTCGATAGGATGGGATTGACAGCTGAACGAACAACCAGCCTGGTG ACTCTAATAATCTAATAATAGTGCACAAACTTCTTGGCCTTTTGGTTTTG TGCGATCGGCAGAGTGCAGGCTACCTTTCAGGGGTGTCTTCATCCCACTC TGTACCCTTATTGGGGATGACGTCGTGTGAAGCTGGCTACGAGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2532488..2534633-

>mRNA_C-linearis_contig8.15680.1 ID=mRNA_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at C-linearis_contig8:2532488..2534633- (Chordaria linearis ClinC8C monoicous)
ATGGCTAGATCGATGCTTACCTATGCGTTGTGCGTCTGTCAGTTGGTGAC
GACAGCGGCCTTTCTGAGTTCCCCGAAAATCGCGCCGGTGCTGGTTTCGC
CATCGTCGTCCCACTCGCCGCTCCAGCGCCCCAAGCTGCCGCACGCAGTA
GTGCAGCGACAGACGGGTCGTACTGCGGTGGCTTCTCTGCCCCGTCGCCA
CCGAATCCAGCAGCAGGCACGGGATTGCGAAGCCCTAGGAATCGACAACG
AGTTGACAGTCCCGCGAACGCTGGAGTCGGGGCGAAACACTGCCGTTGAA
GAAACTGGCAGCAGCTGTCGATCGCAGGCTTCGCGGAGGTCGCTCGCCAC
CCCTCGGTTCGCAGCGTTGGCTGCGTCTGCGCTCGTGGCAGGGCTGGCCG
TGGCGGTGCTCGCGCCGGGCCCCGCAGCGGCAGCGGTCAAGGCGGCAGTC
GCGGGGAGCGAGGACGAGGTTCACCTGCACCTTGGGCAGAAGGTCGCCAA
CCTTTTCCGGCAAGGCGGCCTGCCAGACTGGGCGACGCTCATGACGATCT
CCGCGATGCCAGTGGTCGAGCTGCGCGGCGGGGTCCCCGTGGGCATCTGG
ATGGGCATGCCGATCGCGAAGGTCTTCGGGCTGTGCGTCGCGGGCAACAT
GATCCCCATCCCCGTCATCCTGCTCGCGCTCCGGTCCTCCTTCGTCCAGA
AGCTTGCCAAGCCCGTGCTGGACCGCGCCCGCGAGAAGGCGGCTGGGTTC
GGCGACGAAAAGAGCCAGGCCCTAGCGCTGACGCTGTTTGTGGGTATCCC
GCTCCCTGGTACGGGGGCGTGGACTGGGGCCATGGGGGCGTTTTTGCTGG
GTATGCCGTTCCAGAAGATGGCTAGATCGATGCTTACCTATGCGTTGTGC
GTCTGTCAGTTGGTGACGACAGCGGCCTTTCTGAGTTCCCCGAAAATCGC
GCCGGTGCTGGTTTCGCCATCGTCGTCCCACTCGCCGCTCCAGCGCCCCA
AGCTGCCGCACGCAGTAGTGCAGCGACAGACGGGTCGTACTGCGGTGGCT
TCTCTGCCCCGTCGCCACCGAATCCAGCAGCAGGCACGGGATTGCGAAGC
CCTAGGAATCGACAACGAGTTGACAGTCCCGCGAACGCTGGAGTCGGGGC
GAAACACTGCCGTTGAAGAAACTGGCAGCAGCTGTCGATCGCAGGCTTCG
CGGAGGTCGCTCGCCACCCCTCGGTTCGCAGCGTTGGCTGCGTCTGCGCT
CGTGGCAGGGCTGGCCGTGGCGGTGCTCGCGCCGGGCCCCGCAGCGGCAG
CGGTCAAGGCGGCAGTCGCGGGGAGCGAGGACGAGGTTCACCTGCACCTT
GGGCAGAAGGTCGCCAACCTTTTCCGGCAAGGCGGCCTGCCAGACTGGGC
GACGCTCATGACGATCTCCGCGATGCCAGTGGTCGAGCTGCGCGGCGGGG
TCCCCGTGGGCATCTGGATGGGCATGCCGATCGCGAAGGTCTTCGGGCTG
TGCGTCGCGGGCAACATGATCCCCATCCCCGTCATCCTGCTCGCGCTCCG
GTCCTCCTTCGTCCAGAAGCTTGCCAAGCCCGTGCTGGACCGCGCCCGCG
AGAAGGCGGCTGGGTTCGGCGACGAAAAGAGCCAGGCCCTAGCGCTGACG
CTGTTTGTGGGTATCCCGCTCCCTGGTACGGGGGCGTGGACTGGGGCCAT
GGGGGCGTTTTTGCTGGGTATGCCGTTCCAGAAGGCAATGCTGTCAATCT
TCCTCGGAGTACTGAGCGCCGGCATGATCATGAGCTGCCTCACCCTCGCA
GGGAAGGCCGGAGCCCTGGTAGCAACGGCCGTTCTGGCCGTGTTTTGCGT
GTCTAGCATACTGGGGGGAGGAAAGGGAGGAAACAAAGCGTCGGATTTCT
CGTCCAAGTAGGCAATGCTGTCAATCTTCCTCGGAGTACTGAGCGCCGGC
ATGATCATGAGCTGCCTCACCCTCGCAGGGAAGGCCGGAGCCCTGGTAGC
AACGGCCGTTCTGGCCGTGTTTTGCGTGTCTAGCATACTGGGGGGAGGAA
AGGGAGGAAACAAAGCGTCGGATTTCTCGTCCAAGTAG
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