mRNA_C-linearis_contig8.15675.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15675.1
Unique NamemRNA_C-linearis_contig8.15675.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.090e-89
Identity = 181/347 (52.16%), Postives = 212/347 (61.10%), Query Frame = 1 
Query:  106 MPSRNLGNLALAAAIALVAALVLFARDGTGVWRIPFLS-PESAATP------------VHVAGA--DGGSEXXXXXXXXXXSKPTK--------------------QAAAGVT-----------------------------AKAPLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGVLAFLAS 954
            MPSR +GNLA+AAA AL +A + FARD  G WR  FL+ P   +T             VH+AG   DG S+        XX                         +A A                                AK PLS +V+DPATGLVLPRTK+F  SK  L CLGVGVR KS+A   VNVYTVGLYV PKGAR ALK YAG DP  LSKDKS+++VLG  G FSKYLHLVFAR+VGAQKVVDA T+VKGV + VLD+FS+L ++ VG SI + ESVTLGWEGKD++V+LVRDK  G+I+D ALP +VF L+LGS PVSP AK AFAEGV  FLAS
Sbjct:    1 MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFLNLPIGGSTAPIASNSDPYVPAVHLAGVTGDGNSKGPPVASESXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAKTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 7.350e-89
Identity = 147/214 (68.69%), Postives = 172/214 (80.37%), Query Frame = 1 
Query:  313 TKQAAAGVTAKAPLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGVLAFLAS 954
            T  A A   AK PLS +V+DPATGLVLPRTK+F  SK  L CLGVGVR KS+A   VNVYTVGLYV PKGAR ALK YAG DP  LSKDKS+++VLG  G FSKYLHLVFAR+VGAQKVVDA T+VKGV + VLD+FS+L ++ VG SI + ESVTLGWEGKD++V+LVRDK  G+++D +LP +VF+L+LGS PVSP AK AFAEGV AFLAS
Sbjct:   16 TSYAKAAGLAKTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC)

HSP 1 Score: 151 bits (381), Expect = 2.000e-38
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 1 
Query:  349 PLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFK-VLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGVLAFLA 951
            P++  +KD  TG+  P    FP     +T LG G R K++ +AKVNVY+VGLYV PK A  AL  + G    SL  D   +  +LG+     K + L FAR VGA KV DAL++VKGV   V+  F +L+   +GASI K E++ +GW    ++ +L+R + AGT+VDA LPKA F+LYLG +PVS  AK AF + V +  +
Sbjct:    4 PVAAVLKDKVTGIEFPCEATFP-GTPKMTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKE--VPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 149 bits (375), Expect = 2.490e-37
Identity = 92/197 (46.70%), Postives = 123/197 (62.44%), Query Frame = 1 
Query:  349 PLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSI-AVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGV 936
            PL+  + D ATGL       FP S   +T LG GVRAK++     VNVY+VGLYV P  AR  L  +   +   L+K +  +K L +     K +HL FAR+VGA K+V+ALTS+ GV +  L +FS L+LD++G+SIG  E+VTL     D + ++VR K AG++ D+ LPKA FDLYLG +PVS  AK AFA  V
Sbjct:   31 PLAAILTDAATGLDFETDVSFP-SSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKED-LPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRV 225
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A835ZC45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC45_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.490e-37
Identity = 92/207 (44.44%), Postives = 121/207 (58.45%), Query Frame = 1 
Query:  370 DPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTS-VKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFD--------------LYLGSSPVSPAAKAAFAEGVLAF 945
            +P TG+ L  T  F  S A L C+G G R KS+A+A V VY + LYV P GA  AL +Y G  P   ++D   ++ L +   F  YL + FARNVG  KVV+ALTS V+GV   VL  F+ ++  A+G S+ KG+ V +GWEG+ ++ ++VR    G + DA LP A+F               LYLGS PVSP AKAAFA GV A 
Sbjct:  325 EPVTGIALAATASFGGS-AQLRCVGAGARVKSVALASVKVYALALYVEPGGAARALARYEGVAPAERARDVGFYEELMKPAAFPSYLVMSFARNVGTPKVVEALTSAVQGVAPDVLKNFAGMLGAAMGPSMRKGDVVAMGWEGEGRLAVVVRGVRVGEVADAVLPGAIFKVNFDTSTVHFLAVRLYLGSDPVSPPAKAAFASGVSAI 530
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK)

HSP 1 Score: 147 bits (370), Expect = 2.690e-35
Identity = 90/197 (45.69%), Postives = 118/197 (59.90%), Query Frame = 1 
Query:  346 APLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGV 936
            AP +  + D ATG+     K F    A L  +G GVRAK++ VA VNVY+V LYV+   A  AL  Y G+          +F VL     F+K ++L FAR VG+QK++DALT+V+GV    LD FS L+L A+G  IG  E++ LG++    M + VR+  AGT+ DA L  AVF LYLG+SPVS  AK AF  GV
Sbjct:  159 APGATSLTDDATGIAFDGVKAF--GGAKLAAVGAGVRAKNLGVAMVNVYSVCLYVDKPKAAKALATYKGNP------GPGVFDVL-MAKNFNKVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGV 346
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.760e-34
Identity = 82/187 (43.85%), Postives = 113/187 (60.43%), Query Frame = 1 
Query:  325 AAGVTAKAPLSKEVKDPATGLVLPRTKRFPPSKAD--LTCLGVGVRAKS-IAVAKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFD 876
            A G  + +  + +V +P TG+  P TK F  +     LT  GVGVR K+ +   KVNVY +GLYV+P  A  A  KY G D   ++KD   FK+L   G F+K +++ +AR VG  KVVDAL  V       LD F  L++   G++IG  E++TLGWEGKDK+V+ VRDK+ GT+  A L +AVF+
Sbjct:   18 ATGEESSSSAADKVTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPG-FAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 6.820e-31
Identity = 93/263 (35.36%), Postives = 138/263 (52.47%), Query Frame = 1 
Query:  166 LVLFARDGTGVWRIPFLSPESAATPVHVAGADGGSEXXXXXXXXXXSKPTKQAAAGVTAKA----PLSKEVKDPATGLVLPRTKRFPPSKADLTCLGVGVRAKSIAV-AKVNVYTVGLYVNPKGARGALKKYAGSDPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGK-GESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGV 936
            L +F  D  G   +P      A       GAD  S           S   + AA   T++     P   ++ +PATG+VL  T  F  S   LTC+G+GVR   +   + V+VY +GLY++  GAR ALK +       L++    +  L + G F++Y+ L F R V   KV DALT+V+GV   ++D +  L+  A+G    + G+++ LG+EGKD++V++   K+ G +    LP AVF LYLG  P+ PAAK A A+GV
Sbjct:   90 LAIFRLDKKGYLEVP------AVWDAGAVGADYASLSEQGVLTLYQSGYVRDAAVWSTSREVATPPRKTDLVEPATGIVLWPTDSFNGSPP-LTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGV 345
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A7S1JL13_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JL13_9ALVE)

HSP 1 Score: 110 bits (275), Expect = 1.320e-24
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 1 
Query:  508 VNPKGARGALKKYAGSDPISLSKDKSLFK-VLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVFDLYLGSSPVSPAAKAAFAEGVLAFLA 951
            V PK A  AL  + G    SL  D   +  +LG+     K + L FAR VGA KV DAL++VKGV   V+  F +L+   +GASI K E++ +GW    ++ +L+R + AGT+VDA LPKA F+LYLG +PVS  AK AF + V +  +
Sbjct:    1 VEPKEASKALSSFKGESEESLMNDDRFYDTLLGKE--VPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 147
[Close]
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.960e-22
Identity = 62/134 (46.27%), Postives = 81/134 (60.45%), Query Frame = 1 
Query:  616 FSKYLHLVFARNVGAQKVVDALTSVKGVGKGVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAALPKAVF------------------------DLYLGSSPVSPAAKAAFAEGVLAF 945
            + +YL L FAR+V A KV DALT+V+GV   VL  F+ L+  A+G ++  G+++ LGWEGKD++V++VR K AG + DAALP A+F                         LYLGS PVSP AKAAFA GV A 
Sbjct:  296 YPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSAI 429
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHX0_9PHAE1.090e-8952.16FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G2G9_ECTSI7.350e-8968.69Similar to Chalcone Isomerase n=1 Tax=Ectocarpus s... [more]
A0A0G4GUV1_VITBC2.000e-3844.06Chalcone_isomerase domain-containing protein n=2 T... [more]
A0A0G4GWT2_9ALVE2.490e-3746.70Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A835ZC45_9STRA7.490e-3744.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9GES1_HETAK2.690e-3545.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UYK7_9STRA4.760e-3443.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z7E7_9STRA6.820e-3135.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1JL13_9ALVE1.320e-2443.62Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A835ZLC9_9STRA4.960e-2246.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2496795..2500794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.8
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog296587.XP_002503292.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759,34IMC@3041,37WXY@33090
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-00_005930.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size2031
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15675.1prot_C-linearis_contig8.15675.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2497869..2499831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.7211926-UTR-C-linearis_contig8:2496794..24978681622930547.7211926-UTR-C-linearis_contig8:2496794..2497868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2496795..2497868 -
1690881126.0577154-UTR-C-linearis_contig8:2496794..24978681690881126.0577154-UTR-C-linearis_contig8:2496794..2497868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2496795..2497868 -
1622930547.7926462-UTR-C-linearis_contig8:2499831..24998711622930547.7926462-UTR-C-linearis_contig8:2499831..2499871Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2499832..2499871 -
1690881126.110053-UTR-C-linearis_contig8:2499831..24998711690881126.110053-UTR-C-linearis_contig8:2499831..2499871Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2499832..2499871 -
1622930547.812137-UTR-C-linearis_contig8:2500729..25007941622930547.812137-UTR-C-linearis_contig8:2500729..2500794Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2500730..2500794 -
1690881126.1200807-UTR-C-linearis_contig8:2500729..25007941690881126.1200807-UTR-C-linearis_contig8:2500729..2500794Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2500730..2500794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.739196-CDS-C-linearis_contig8:2497868..24981061622930547.739196-CDS-C-linearis_contig8:2497868..2498106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2497869..2498106 -
1690881126.078513-CDS-C-linearis_contig8:2497868..24981061690881126.078513-CDS-C-linearis_contig8:2497868..2498106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2497869..2498106 -
1622930547.7557154-CDS-C-linearis_contig8:2498440..24986601622930547.7557154-CDS-C-linearis_contig8:2498440..2498660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2498441..2498660 -
1690881126.089446-CDS-C-linearis_contig8:2498440..24986601690881126.089446-CDS-C-linearis_contig8:2498440..2498660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2498441..2498660 -
1622930547.7764795-CDS-C-linearis_contig8:2499437..24998311622930547.7764795-CDS-C-linearis_contig8:2499437..2499831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2499438..2499831 -
1690881126.1007626-CDS-C-linearis_contig8:2499437..24998311690881126.1007626-CDS-C-linearis_contig8:2499437..2499831Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2499438..2499831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15675.1

>prot_C-linearis_contig8.15675.1 ID=prot_C-linearis_contig8.15675.1|Name=mRNA_C-linearis_contig8.15675.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=284bp
MPSRNLGNLALAAAIALVAALVLFARDGTGVWRIPFLSPESAATPVHVAG
ADGGSEKKKKKPRAAASKPTKQAAAGVTAKAPLSKEVKDPATGLVLPRTK
RFPPSKADLTCLGVGVRAKSIAVAKVNVYTVGLYVNPKGARGALKKYAGS
DPISLSKDKSLFKVLGQVGGFSKYLHLVFARNVGAQKVVDALTSVKGVGK
GVLDRFSTLMLDAVGASIGKGESVTLGWEGKDKMVILVRDKSAGTIVDAA
LPKAVFDLYLGSSPVSPAAKAAFAEGVLAFLAS*
back to top

mRNA from alignment at C-linearis_contig8:2496795..2500794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15675.1 ID=mRNA_C-linearis_contig8.15675.1|Name=mRNA_C-linearis_contig8.15675.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4000bp|location=Sequence derived from alignment at C-linearis_contig8:2496795..2500794- (Chordaria linearis ClinC8C monoicous)
CTCTTCTGCTGTCTGTCGCGCGTCGCGCGTGGAGGAAGCCCGATAACTGG
CTGGTTGGCGCGAAGGTAAGCTCCGTTGCTCTTTGTTTGTGTCGTCGAGC
TTCGCCGTGGAGAAAAACTGTGATGGCAATATCAAACATACATACCTCTG
TGTTGTTCAGACTTACAGCAGTCTGTGCATACGGAGATGCCGTCACCTTT
CGGAGATGCTGCCGTTGCCGCACACCACTTTGGAGCTCGACGAGGCTGGT
GTTGCAACACACGTTAGTTGTGTCGCCTGTACGCCTGCACCGGCACCTCT
GTTGCCGTAAAAAATTCCGCATTTACCTTGGAGTAACCACGTGTATGCGT
GTCAAAATAGTGTATTCGCGTGCATGCGTCCATGGCGCGTGTTTTCATGA
CGGCAGTGGTGTGAAAGGCGATGTACTTTTGCTGCTTTGGCCAACTCAGT
ACGGGTTTTAGCCGTACTTGACTCGAAAGAAGGCGGGGAGCACTTGCATG
GAGTAAAATTGCTGCAGACACCGAGCAGCTTTGTGTATCCAATCCAGGTT
TTCCAGGTCCACGATTGATTCTCGTGAGAATCTACTGCTGTTGACAACAT
GTGCGCCGACGGGCTTCTTGAGTCCACCTCTTTCCGTGTCTATACTTGTA
GCTGGATCCTCCGAGTATACCTGTCTGCCGGAAGTAAGTTTGATGTTGTG
CTCCCTTCAATTTGTACAGAGCGCATTCAGAGCTGAAATATTGACAGCGC
GCACCTCCTCCGCTGGCGTGCAACCGTGGCCTGCAGTAAGTCAACCTAGG
GGTTGTGCACTATCCAACGCAATCCTGTAGTTTCGTCTTGCCTTAGTGGG
AGCTATGAACAACATCAAACCAGAATGCCCCCGCCCCCCCACGAAATCAC
GTTTTCCAATCAATCAAAAACAGCACGACACGTGCGAGAAAGAGGGCGAG
AGAGCGCTGCACGATGCCGTCGCGAAACCTGGGAAACCTCGCGCTAGCGG
CGGCAATCGCTCTCGTGGCAGCGCTCGTGCTTTTCGCCCGCGACGGGACC
GGCGTGTGGCGCATTCCTTTCCTCTCCCCTGAGAGCGCTGCTACGCCCGT
GCACGTCGCCGGCGCAGACGGCGGCAGCGAGAAGAAGAAGAAGAAGCCTC
GGGCCGCGGCATCCAAACCGACCAAGCAGGCGGCGGCGGGCGTCACGGCC
AAGGCACCGTTATCGAAGGAGGTGAAGGACCCTGCGACGGGTCTCGTGTT
GCCGCGAACGAAGCGGTTCCCGCCCTCAAAGGCCGACCTCACCTGCCTAG
GGGTCGGGGTTAGGGCCAAGTCGATCGCCGTCGCCAAGGTCAACGTGTAC
ACCGTGGGTGAGTGATGGTAGGATAGATACCTCAGGCGGCAACGGAAGGA
GGAGAGCCGTTGTTCGTGTTTTTTTTTTCGTCTTCACATTTATTTATTGC
CAGAGTTCGCAGGGGCGCCTTGCCACGCGGGGCGGGGCATCTTGCCAGAA
CGACTGAACCGTGGTCACACAGAAGGCTCCTCTTCCTGAGGCCCCCACCC
ACCTTCTGCCGTGCTTGCCTGGTAATTTTTAACGCGAGAGAGTTTCAGCC
GTCTCTCCCTCAAGTGCACACACGTAACTAAGCGCTTTCCACTGACAGGA
ACGAAAGCGAGAGAAAAACTCCATTTGTCTATGAGAAAAAGTAGTTTCGC
GCCCGGATTCGAACCCGTGAACCTGCATGCTAGATGGTTGCGGTGAGACC
ACTAGACCACCGGGGCGACCGGCTTGCCCTTCGTGTGCACCATAAAAATA
GAGACGATTTGTCCTGAGTTTTGACAAGCCGCCAGGCAAGGAAGATCCTG
CTGCTTGTCCGCCTTTTCCGCTCCGGTTGCTTGGCCGAATCTTTCTCATC
GCGTGGTACACCCCCGTCCCCGACCATCAAAACTCGTCCATCAAATGGAC
TTCTCCATGTGAGCTGGGGCGGCGGGAATGGATTAGCGCGACCACGGCAT
TCGAAGCTATGTTAACGATGGCACGCGCTTTTTGATGTCCTTGCGTTGCA
CCGCCCTCTTAACAACAAGTGCCCCCCCCCCCGTCTACTCACTCATCGTA
TGTACGTGGCCTCGACCCCCCTCCCTCACGACAGGGCTCTACGTAAACCC
GAAGGGCGCTCGTGGAGCCCTCAAGAAGTACGCCGGCTCGGACCCCATCT
CTCTCAGCAAGGACAAGTCGCTCTTCAAGGTGCTGGGGCAGGTGGGCGGC
TTCTCCAAGTACCTTCACCTCGTGTTCGCGAGGAACGTTGGGGCGCAGAA
GGTGGTTGACGCGCTCACTTCCGTCAAGGGCGTGGGCAAGGGTGTTCTCG
ACAGGTGGGTGTGTGTGTGTGTCGGGGGGAGGGGCGCCGACAGCACGCGC
AGAGGGGTAGGAGAGGGATGCTCTCTGGATGGATGGACTGATGCTTTTTC
GAGCCGAAAGCAGCAATTTGCTCTCTTTCCGTTGTTGGCCCGCCGCGTGT
TGCTGGTGGGTCCAAGCAAACGTGCTCGCATACCCCAACTTGGTCGCAAG
TTAGCAGCTGCACGCGTGTCTATCTCAACACACGAAATCGCTGTTCAAAA
GCAGATGTTTTTGGGAAGTTTTACCGCAAGGACAGAGTGGCAACGTACGA
TATTTCACCCCCCATCCGCACCCCCCTGCCTCTGTCAGGTTTTCCACCTT
GATGCTTGACGCCGTCGGAGCGAGCATCGGCAAGGGAGAGTCGGTCACGT
TGGGGTGGGAAGGGAAAGACAAGATGGTTATCTTGGTGCGCGACAAGTCG
GCCGGCACCATCGTGGACGCGGCCCTCCCGAAGGCTGTTTTCGACCTGTA
CTTGGGGTCCAGCCCCGTCTCTCCCGCCGCAAAGGCCGCCTTCGCGGAAG
GGGTGCTCGCGTTCTTGGCGAGCTGACCTCGAGAGCTTGATTTAGGCTTG
ATTTGAGTTGACGCTAGGGGAAGAGAGAGACAGGAAGAGGGAGAGGGAGG
GAGCAAAGCAACGGCGGTGGATTGGGGTCGCGATCTATTTTGGCCGCCTG
TTGCCAGCTTTGTGTGTGTGTGTGTTGTGCTCCGTGAGTCACAGCGTTTT
TGTTTCAGCTTGTTTAGTCGTGTCTACCGGTATTTCTGTCGTGTTTATCT
TGGCCTACGATGTTGGCGAGTCGGACTTTGAGGAGCGAGACAACCAACCA
AAAGACCCACGTCGGCGGGTTTGTGTGTGTGTTTCGGGGCAAGGACCCGC
CGAATCATGTTCGTGACTATTTTTCGCTCGAGAACACTGGCAGAATCTCG
GTGTAGACGGTGTGGGGATCATGTTTGTCATGTCTTTTTCCGGGGTCACG
TGTGTACCGATACTGCGTTCCGGCGTTTTTTTACCACCGTGTCGGCGGTG
CTTGTTGTGGCGTGCGTGTGAAAGTGCGTCGCATTCCTTCGTTCTTGCCT
GCCTGGGGTGTGTGCGTGTTTCGTGTCCGATCGATTGTGTTTCATTGTGC
GTTCCGCCTGTTTAGTCATCAGGACCAACCTGGCCATTGTTGTTTCGCTG
TACGTTTTCAGTTTTCGAGCGTACTGCCGCCCGCGCGCGAGAGAGCTTGC
AACCAAGGTAGACGTCGAGTAAAGTTGTTTAGCTACGCATGCAGAGGTGC
CAAAAGCTTCGTTGGTTCTGTCGTTTCTACGCGTACGTGCACAGTTGCCG
ACGGCGTGCAACGGTCGCCACGACCCGGATGCTTTCAATTTGTTTTCAGG
ATTTTATCGCAACCGAGAGACCCCCGCCGTTCGTCTTAGTTAGTGCGGCG
CAACCCTCGAAGCGGTACACGAGCATGCCGCCGTTTGAGTCGGTTCAGTA
GATTCGGCTTCGTGAAACGAGCGAGAGGGATGCCGTTGGGCGGAGAATTT
CGTATTGGTACAGCAGTAGTCTGATTCCAGCAAATGTATTTTGTCGGGCG
CGCGCACCCCACAAACGCGTACGTTCTACACTCGTGTTGAATGCAAGACA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:2496795..2500794-

>mRNA_C-linearis_contig8.15675.1 ID=mRNA_C-linearis_contig8.15675.1|Name=mRNA_C-linearis_contig8.15675.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at C-linearis_contig8:2496795..2500794- (Chordaria linearis ClinC8C monoicous)
ATGCCGTCGCGAAACCTGGGAAACCTCGCGCTAGCGGCGGCAATCGCTCT
CGTGGCAGCGCTCGTGCTTTTCGCCCGCGACGGGACCGGCGTGTGGCGCA
TTCCTTTCCTCTCCCCTGAGAGCGCTGCTACGCCCGTGCACGTCGCCGGC
GCAGACGGCGGCAGCGAGAAGAAGAAGAAGAAGCCTCGGGCCGCGGCATC
CAAACCGACCAAGCAGGCGGCGGCGGGCGTCACGGCCAAGGCACCGTTAT
CGAAGGAGGTGAAGGACCCTGCGACGGGTCTCGTGTTGCCGCGAACGAAG
CGGTTCCCGCCCTCAAAGGCCGACCTCACCTGCCTAGGGGTCGGGGTTAG
GGCCAAGTCGATCGCCGTCGCCAAGGTCAACGTGTACACCGTGGATGCCG
TCGCGAAACCTGGGAAACCTCGCGCTAGCGGCGGCAATCGCTCTCGTGGC
AGCGCTCGTGCTTTTCGCCCGCGACGGGACCGGCGTGTGGCGCATTCCTT
TCCTCTCCCCTGAGAGCGCTGCTACGCCCGTGCACGTCGCCGGCGCAGAC
GGCGGCAGCGAGAAGAAGAAGAAGAAGCCTCGGGCCGCGGCATCCAAACC
GACCAAGCAGGCGGCGGCGGGCGTCACGGCCAAGGCACCGTTATCGAAGG
AGGTGAAGGACCCTGCGACGGGTCTCGTGTTGCCGCGAACGAAGCGGTTC
CCGCCCTCAAAGGCCGACCTCACCTGCCTAGGGGTCGGGGTTAGGGCCAA
GTCGATCGCCGTCGCCAAGGTCAACGTGTACACCGTGGGGCTCTACGTAA
ACCCGAAGGGCGCTCGTGGAGCCCTCAAGAAGTACGCCGGCTCGGACCCC
ATCTCTCTCAGCAAGGACAAGTCGCTCTTCAAGGTGCTGGGGCAGGTGGG
CGGCTTCTCCAAGTACCTTCACCTCGTGTTCGCGAGGAACGTTGGGGCGC
AGAAGGTGGTTGACGCGCTCACTTCCGTCAAGGGCGTGGGCAAGGGTGTT
CTCGACAGGGCTCTACGTAAACCCGAAGGGCGCTCGTGGAGCCCTCAAGA
AGTACGCCGGCTCGGACCCCATCTCTCTCAGCAAGGACAAGTCGCTCTTC
AAGGTGCTGGGGCAGGTGGGCGGCTTCTCCAAGTACCTTCACCTCGTGTT
CGCGAGGAACGTTGGGGCGCAGAAGGTGGTTGACGCGCTCACTTCCGTCA
AGGGCGTGGGCAAGGGTGTTCTCGACAGGTTTTCCACCTTGATGCTTGAC
GCCGTCGGAGCGAGCATCGGCAAGGGAGAGTCGGTCACGTTGGGGTGGGA
AGGGAAAGACAAGATGGTTATCTTGGTGCGCGACAAGTCGGCCGGCACCA
TCGTGGACGCGGCCCTCCCGAAGGCTGTTTTCGACCTGTACTTGGGGTCC
AGCCCCGTCTCTCCCGCCGCAAAGGCCGCCTTCGCGGAAGGGGTGCTCGC
GTTCTTGGCGAGCTGAGTTTTCCACCTTGATGCTTGACGCCGTCGGAGCG
AGCATCGGCAAGGGAGAGTCGGTCACGTTGGGGTGGGAAGGGAAAGACAA
GATGGTTATCTTGGTGCGCGACAAGTCGGCCGGCACCATCGTGGACGCGG
CCCTCCCGAAGGCTGTTTTCGACCTGTACTTGGGGTCCAGCCCCGTCTCT
CCCGCCGCAAAGGCCGCCTTCGCGGAAGGGGTGCTCGCGTTCTTGGCGAG
CTGA
back to top