mRNA_C-linearis_contig8.15669.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15669.1
Unique NamemRNA_C-linearis_contig8.15669.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15669.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.350e-22
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 3 
Query:    6 PWGFGVEYQASQREVRRKVLKLDLQVYDDNRVHFKDVLRALSEEVYRTEAARMGESEDLQDSYKADKPNTIGSRKRRKQESGYMVNTFSNTAITFDQILAIEFLQHAFREKVAKRKRDQE 365
            PWGFG +YQAS REVR  + +L L++++DN+VHFKDVL ALSEEV+R EA + G + DL   ++A K  T   +        YMVN  S   +T D ILA EF+Q AFR  +  R+  +E
Sbjct: 1590 PWGFGKDYQASDREVRAHIRRLKLRIFNDNKVHFKDVLLALSEEVHRLEAEKKGATIDLPQYFQA-KLATGWQKTSGINSHDYMVNPVSGGTVTLDHILAAEFIQKAFRRFLEFRRSTEE 1708
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BLAST of mRNA_C-linearis_contig8.15669.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.250e-17
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 3 
Query:    3 KPWGFGVEYQASQREVRRKVLKLDLQVYDDNRVHFKDVLRALSEEVYRTEAARMGE 170
            KPWGFGV YQAS RE+R KV +LDL V+D+N+VHFKDVL ALSEEV+RTEA + GE
Sbjct: 1335 KPWGFGVHYQASSRELRHKVRRLDLFVFDNNKVHFKDVLHALSEEVFRTEAEKKGE 1390
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BLAST of mRNA_C-linearis_contig8.15669.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.990e-5
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:    6 PWGFGVEYQASQREVRRKVLKLDLQVYDDNRVHFK 110
            PWGFG +YQAS REVR  + +L L++++DN+VHFK
Sbjct: 1113 PWGFGKDYQASDREVRAHIRRLKLRIFNDNKVHFK 1147
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVE6_ECTSI3.350e-2247.50Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
D8LI93_ECTSI4.250e-1773.21Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5JIB7_9PHAE1.990e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2443947..2445457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size440
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15669.1prot_C-linearis_contig8.15669.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2443983..2444943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.4679265-UTR-C-linearis_contig8:2443946..24439821622930502.4679265-UTR-C-linearis_contig8:2443946..2443982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2443947..2443982 -
1690881102.7502034-UTR-C-linearis_contig8:2443946..24439821690881102.7502034-UTR-C-linearis_contig8:2443946..2443982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2443947..2443982 -
1622930502.5289528-UTR-C-linearis_contig8:2444943..24449941622930502.5289528-UTR-C-linearis_contig8:2444943..2444994Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2444944..2444994 -
1690881102.7961519-UTR-C-linearis_contig8:2444943..24449941690881102.7961519-UTR-C-linearis_contig8:2444943..2444994Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2444944..2444994 -
1622930502.5486426-UTR-C-linearis_contig8:2445347..24454571622930502.5486426-UTR-C-linearis_contig8:2445347..2445457Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2445348..2445457 -
1690881102.8090892-UTR-C-linearis_contig8:2445347..24454571690881102.8090892-UTR-C-linearis_contig8:2445347..2445457Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2445348..2445457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.4798784-CDS-C-linearis_contig8:2443982..24440371622930502.4798784-CDS-C-linearis_contig8:2443982..2444037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2443983..2444037 -
1690881102.7611363-CDS-C-linearis_contig8:2443982..24440371690881102.7611363-CDS-C-linearis_contig8:2443982..2444037Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2443983..2444037 -
1622930502.494839-CDS-C-linearis_contig8:2444350..24444931622930502.494839-CDS-C-linearis_contig8:2444350..2444493Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2444351..2444493 -
1690881102.7719288-CDS-C-linearis_contig8:2444350..24444931690881102.7719288-CDS-C-linearis_contig8:2444350..2444493Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2444351..2444493 -
1622930502.509487-CDS-C-linearis_contig8:2444898..24449431622930502.509487-CDS-C-linearis_contig8:2444898..2444943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2444899..2444943 -
1690881102.782715-CDS-C-linearis_contig8:2444898..24449431690881102.782715-CDS-C-linearis_contig8:2444898..2444943Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2444899..2444943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15669.1

>prot_C-linearis_contig8.15669.1 ID=prot_C-linearis_contig8.15669.1|Name=mRNA_C-linearis_contig8.15669.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=81bp
MGESEDLQDSYKADKPNTIGSRKRRKQESGYMVNTFSNTAITFDQILAIE
FLQHAFREKVAKRKRDQEAVAAGGAVPGSE*
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mRNA from alignment at C-linearis_contig8:2443947..2445457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15669.1 ID=mRNA_C-linearis_contig8.15669.1|Name=mRNA_C-linearis_contig8.15669.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1511bp|location=Sequence derived from alignment at C-linearis_contig8:2443947..2445457- (Chordaria linearis ClinC8C monoicous)
TCAAGCCGTGGGGCTTCGGCGTGGAATATCAGGCGAGCCAAAGAGAAGTG
CGGCGAAAGGTGTTGAAGCTGGACCTTCAGGTCTATGACGACAACCGAGT
GCATTTCAAGGTGTGAACCGTATGCGACGTGCTTCTAGGCTGCTGCAAGG
GTGGTCAGGGCTGAGTGGAATAGTTCCGGTTGTTTGTTGAATTGGCAGGT
CGTGACGCCCTCGGCTATGTGGCGGTTTCATGGATCTGTGCTGTTTGTGT
CGGATTGGGTCCTGGGCCTTATCGTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTCCATTGTCGGTACGAACTCTTCTACGAGCGCAATACCATAGGGATG
TAGGTGCTCTATTCCTCTCGGAACATCGAAGGTACATCTCTCTTCCGTTT
TAGGATCCCCCTCAACCCGCCCCACGACCCCCTCGACGTCGGTCGTTCTT
TGTTTGTTGGCAGGATGTGCTCCGCGCGCTGTCCGAGGAGGTGTATCGCA
CCGAGGCCGCCAGGATGGGCGAGTCGGAAGACCTCCAGGATAGCTACAAG
GCAGACAAGGCGAGTGGAATGTTTTTTTGTCTTGGTCATTGCCAACGCCC
CCCCAGCTAGACTATGAATTCCAACTCAAGAGAAGGTTTTCGTTTGGCTT
CGAACTCCCAAATCATCCTGTGCCAATACCAACACATTTTCCAATTAGAA
CGAGGGCCAAAAAGCAGGACATTCGACATTGCTGAATCAGCGTTGCTCTA
GTTGTGTCGTACTTCTAAATGTTTAACACAACAGCTCGTGCTTGGCCGAA
GTTTACTGCCCTCCCCGCTTACAAAATGCCCTCTCCCCTCTTTTTCTTCC
CCTCTTGCTCTGGCTGTCTGTCTGCCTATCTCTCTTTCTGTCTTGGTCTG
GATCTTTCTCTTTGTTCCTCTTCTCTTGCGGCCTGCTGTCTTCTCTTCCT
GACGTTCTTCGCAGCCGAACACCATTGGCAGCAGGAAGAGAAGGAAGCAG
GAATCCGGGTACATGGTGAACACCTTTTCCAATACGGCCATCACATTTGA
CCAGATATTGGCGATTGAGTTCCTCCAGCATGCGTTCAGGGAAAAAGTGG
CGAAAAGGTAACTGAAACGTTGCTATTGCAAGCGTTCGTGGGGGGTCTGT
CAAGTACAAAGCGCGCTTTTTAGGCAAGATTATACTCCGCATGCCGGGGA
AGAAGAGCAGCTTGAAAACTTTGCCTGCATATTGAGCAGGGGGTTAGCGC
AGGCCCACGGCGACGTAGATGTGACAGACGTTCCAGATGACTAAGCGAAC
TGTAAAAGCAACGTCAACATCGGAACCCCAAACAAAATCTGAGCGGAACC
AACTCCTCCACCCCATCACACCACTTACCCCTAAAATGGCCCTTGATATT
GTCGAATTAACTGATTGCAGAAAAAGAGATCAGGAGGCCGTGGCGGCGGG
CGGAGCTGTGCCCGGCTCGGAGTAACCTACCGCGGCCGGAGACAAAAATA
ACAATAACAAC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2443947..2445457-

>mRNA_C-linearis_contig8.15669.1 ID=mRNA_C-linearis_contig8.15669.1|Name=mRNA_C-linearis_contig8.15669.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at C-linearis_contig8:2443947..2445457- (Chordaria linearis ClinC8C monoicous)
ATGGGCGAGTCGGAAGACCTCCAGGATAGCTACAAGGCAGACAAGATGGG
CGAGTCGGAAGACCTCCAGGATAGCTACAAGGCAGACAAGCCGAACACCA
TTGGCAGCAGGAAGAGAAGGAAGCAGGAATCCGGGTACATGGTGAACACC
TTTTCCAATACGGCCATCACATTTGACCAGATATTGGCGATTGAGTTCCT
CCAGCATGCGTTCAGGGAAAAAGTGGCGAAAAGCCGAACACCATTGGCAG
CAGGAAGAGAAGGAAGCAGGAATCCGGGTACATGGTGAACACCTTTTCCA
ATACGGCCATCACATTTGACCAGATATTGGCGATTGAGTTCCTCCAGCAT
GCGTTCAGGGAAAAAGTGGCGAAAAGAAAAAGAGATCAGGAGGCCGTGGC
GGCGGGCGGAGCTGTGCCCGGCTCGGAGTAAAAAAAGAGATCAGGAGGCC
GTGGCGGCGGGCGGAGCTGTGCCCGGCTCGGAGTAA
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