mRNA_C-linearis_contig8.15665.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15665.1
Unique NamemRNA_C-linearis_contig8.15665.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: D8LI94_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI94_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.340e-30
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            HPWFDR +LL+I LNSIVLAL DW+ IDEDP+SEDVGEP+AE SWRN LLYETE  FT +FT+EFVLKV++Q
Sbjct:   40 HPWFDRFILLVIALNSIVLALTDWTRIDEDPSSEDVGEPIAEGSWRNTLLYETEGIFTAIFTLEFVLKVVSQ 111          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.140e-28
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            HPWFDR +L LI+LNS VLAL DWSVID+DPNS DVGEP+ + SWRNALL+E+E  FT  FT+EFVLKVIAQ
Sbjct:   61 HPWFDRFILFLIVLNSFVLALTDWSVIDDDPNSPDVGEPIDDGSWRNALLFESEAVFTAFFTLEFVLKVIAQ 132          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.200e-27
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            HPWFDR +L LI+LNS VLAL DWSVID+DPNS DVGEP+ + SWRNALL+E+E  FT  FT+EFVLKVIAQ
Sbjct:   61 HPWFDRFILFLIVLNSFVLALTDWSVIDDDPNSPDVGEPIDDGSWRNALLFESEAVFTAFFTLEFVLKVIAQ 132          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.000e-27
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            HPWFDR +LL+I LNSIVLAL DW+ IDEDP+SE VGEP+AE SWRN LLYETE  FT +FT+EFVLKV++Q
Sbjct:   61 HPWFDRFILLVIALNSIVLALTDWTRIDEDPSSEHVGEPIAEGSWRNTLLYETESMFTAIFTLEFVLKVVSQ 132          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A7S1G9I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9I4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.900e-8
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 WFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            +FDR +L+LI+ NSIVLAL D+S +  D         L+  SWRN ++ ETE++FT +F  E  LK+IA 
Sbjct:   50 YFDRFILMLIIANSIVLALTDYSSVLPDGT-------LSMSSWRNQVVEETEIYFTTLFAAECSLKIIAM 112          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: B8C0W0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W0_THAPS)

HSP 1 Score: 55.8 bits (133), Expect = 2.410e-7
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 PWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIA 213
            P FD ++L+ I+LNSI +A  D+SV+D++       +P  E S RN+++ + +V FTV+FT+E +LKVIA
Sbjct:   14 PSFDNIILIAIILNSIAIACTDYSVVDDN------YQPSTELSVRNSIIEKIDVPFTVIFTVECLLKVIA 77          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A7S1U4W8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.990e-6
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 FDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALLYETEVFFTVMFTIEFVLKVIA 213
            FD ++L+ I LNSI+ A+ D+  +D+D N E  G      S RN ++Y +E  F V++T EF++K+IA
Sbjct:   57 FDNIILIFIALNSILTAMADYENVDDDGNPEPNG------SARNTIIYVSEFIFLVVYTGEFLIKIIA 118          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A225VQ21_9STRA (Voltage-gated Ion Channel n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQ21_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.540e-6
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNA------LLYETEVFFTVMFTIEFVLKVIAQ 216
            H +FDR ++  I+ NS++L L D+SV+D   N    G+   E    NA      ++  +EV FTV+FT+E VLK+IA 
Sbjct:   63 HRYFDRFIIAAIVANSVILGLSDFSVVDSSLNPASSGKRWVEGKLVNAYSLPNHIVEVSEVPFTVIFTVECVLKIIAM 140          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: A0A6A3FY78_9STRA (Sodium channel protein type 5 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FY78_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.540e-6
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEP------LAEESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            H +FDR ++  I+ NS++L L D+SV+D+D N    G+       +   S +N ++  +E+ FTV+FT E VLK+IA 
Sbjct:   66 HKYFDRFIIAAIITNSVILGLSDFSVVDKDLNPASSGKKYEGGALVNAYSLQNHIVEVSELPFTVIFTAECVLKIIAM 143          
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Match: W2Q9N8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q9N8_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 1.410e-5
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAE------ESWRNALLYETEVFFTVMFTIEFVLKVIAQ 216
            H +FDR ++L I+LNSI+LAL D+SV+D++ N    G    +       S+ N ++  +E+ FT +FT E +LK+IA 
Sbjct:   87 HRFFDRFIVLAIVLNSIILALSDFSVVDKNLNPASPGFTYRDGSIVPATSFLNEIVNLSEIPFTSIFTAECLLKIIAM 164          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LI94_ECTSI3.340e-3075.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJ68_9PHAE9.140e-2873.61Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI2.200e-2773.61Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5KPD7_9PHAE3.000e-2773.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1G9I4_9STRA4.900e-845.71Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
B8C0W0_THAPS2.410e-744.29Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1U4W8_9STRA3.990e-641.18Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A225VQ21_9STRA7.540e-639.74Voltage-gated Ion Channel n=1 Tax=Phytophthora meg... [more]
A0A6A3FY78_9STRA7.540e-638.46Sodium channel protein type 5 subunit alpha n=6 Ta... [more]
W2Q9N8_PHYPN1.410e-539.74Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2426240..2426455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D8LI94
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.719176-CDS-C-linearis_contig8:2426239..24264551622930546.719176-CDS-C-linearis_contig8:2426239..2426455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2426240..2426455 +
1690881125.5767326-CDS-C-linearis_contig8:2426239..24264551690881125.5767326-CDS-C-linearis_contig8:2426239..2426455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2426240..2426455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15665.1prot_C-linearis_contig8.15665.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2426240..2426455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15665.1

>prot_C-linearis_contig8.15665.1 ID=prot_C-linearis_contig8.15665.1|Name=mRNA_C-linearis_contig8.15665.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
HPWFDRLVLLLILLNSIVLALVDWSVIDEDPNSEDVGEPLAEESWRNALL
YETEVFFTVMFTIEFVLKVIAQ
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mRNA from alignment at C-linearis_contig8:2426240..2426455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15665.1 ID=mRNA_C-linearis_contig8.15665.1|Name=mRNA_C-linearis_contig8.15665.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at C-linearis_contig8:2426240..2426455+ (Chordaria linearis ClinC8C monoicous)
CATCCCTGGTTTGACCGTCTGGTTCTACTCCTCATCCTCCTAAATTCGAT CGTGCTTGCGCTCGTGGATTGGAGTGTCATAGACGAGGACCCAAACTCGG AGGATGTGGGGGAGCCTCTCGCGGAGGAGTCTTGGAGAAACGCGCTCTTG TACGAGACCGAGGTATTCTTCACGGTAATGTTCACCATCGAGTTCGTGCT CAAGGTCATCGCGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2426240..2426455+

>mRNA_C-linearis_contig8.15665.1 ID=mRNA_C-linearis_contig8.15665.1|Name=mRNA_C-linearis_contig8.15665.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig8:2426240..2426455+ (Chordaria linearis ClinC8C monoicous)
CATCCCTGGTTTGACCGTCTGGTTCTACTCCTCATCCTCCTAAATTCGAT
CGTGCTTGCGCTCGTGGATTGGAGTGTCATAGACGAGGACCCAAACTCGG
AGGATGTGGGGGAGCCTCTCGCGGAGGAGTCTTGGAGAAACGCGCTCTTG
TACGAGACCGAGGTATTCTTCACGGTAATGTTCACCATCGAGTTCGTGCT
CAAGGTCATCGCGCAGCATCCCTGGTTTGACCGTCTGGTTCTACTCCTCA
TCCTCCTAAATTCGATCGTGCTTGCGCTCGTGGATTGGAGTGTCATAGAC
GAGGACCCAAACTCGGAGGATGTGGGGGAGCCTCTCGCGGAGGAGTCTTG
GAGAAACGCGCTCTTGTACGAGACCGAGGTATTCTTCACGGTAATGTTCA
CCATCGAGTTCGTGCTCAAGGTCATCGCGCAG
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