mRNA_C-linearis_contig8.15653.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI) HSP 1 Score: 820 bits (2117), Expect = 3.500e-292 Identity = 446/642 (69.47%), Postives = 511/642 (79.60%), Query Frame = 1
Query: 1 MVHSGPTVE-TADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSS-PTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGG----TRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPS---AVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAKDQMQARMLETVSSSVD 1899
M + PT + T DCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADA+TL+K+V RP+ W+ + +G+GLSEAF TVPQA L R + A G GGGG+SNV+ GLYQRGRE+DYE+HWPWELKDIEASFKSIEA LTLEE PTTG V PSC RMLEE+G K P+S +E Y+EPTWT+ GLGGC MKRTTTRGGERQ+AW+AFV PVT+MPNL++KDDA VSRVIIE GRAVGVEVVESAP W TR RQLRLAK++AEI VCCGAFRSPKLLMLSGVGPR+HLEEKGV VVVDMPHVGENLQDHL+L T NISK M EADYTE S+H ATYFSCALP XXXXXXXXXXXXXX + + APS AVVGVL DG L ++L I ML RPG GAV R V+A+ WVA W+TP+ R+LRG+R +M+ TS+KSKGTVRL SGTDA+APP+IDP Y SHP+DR+A E WR +RRAKRETTTG AV G E+LPG+ +N +DDESFLKFAR CLP+FHPVGTCRMG+ ++DSVVSADDLRVHG+SGLRVADASVAPHIPATPTQAMCMMIGDRAAAIAL++RFAK+Q++ARM+ET SSS++
Sbjct: 1 MAVASPTADDTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGREEDYEKHWPWELKDIEASFKSIEAELTLEELPTTGTVAPSCARMLEEVGFKSPPRPSSSRSED--------GYTEPTWTRLGLGGCPMKRTTTRGGERQTAWSAFVRPVTTMPNLKIKDDAAVSRVIIEGGRAVGVEVVESAPG-WXXXXXXXXRTRVRQLRLAKDRAEIVVCCGAFRSPKLLMLSGVGPRRHLEEKGVPVVVDMPHVGENLQDHLILATSNISKTRMTEADYTEDSFHSATYFSCALPQEAAAPAGXXXXXXXXXXXXXXXXX-------SRTEAPSPGAAVVGVLHGDGSFLVRNLSGLITMLFVRPGLFGAVGRGVVLAVIWVATWLTPLTRILRGTRCNVMLVTSVKSKGTVRLASGTDAAAPPVIDPGYFSHPQDRRAMLECWRTIRRAKRETTTGRAVFGFELLPGKKFNDCDDDESFLKFAREFCLPYFHPVGTCRMGREVQDSVVSADDLRVHGISGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALRDRFAKEQVKARMIETASSSIN 626
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: L1JH16_GUITC (GMC_OxRdtase_N domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JH16_GUITC) HSP 1 Score: 258 bits (660), Expect = 3.180e-74 Identity = 191/616 (31.01%), Postives = 277/616 (44.97%), Query Frame = 1
Query: 37 CDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGA-VVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMED--------SVVSADD--LRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAK 1851
CD+L+VG G S C L + L AG V++VE G A+ K+V P W + G+ +S + TVPQ A+ ++ + A RG+G GGT NV+ ++ RGR +DY++ WPW+L+DIE F+ E L ++ P G C M+ E G K E W ++G+ G R SAW V+P + ++V VSRVI + + ++ +C GAF SPK+L+LSG+G + LEEK V +++ P+VG +LQDHL+L ++ P+ D + HG + + S G + F A ++ P +C + +G+ V+ V+ +C + ++ I +LR S + +S+G VRL S D PPLIDP YLS D + W + K + + AE+LPG YG F + + +C +FHPVGTCRM G E S VS D LRVHG GLR+AD SVAP IP+ PTQAM MIG +AA + L R K
Sbjct: 34 CDYLVVGGGCSSCSLVACLAAAGKSVVVVEAGGAEPWE-RKVVDDPQSWFAAASHGRPVSRLYRTVPQLAVLSKLMPAFRGEGFGGTGNVNACIWCRGRREDYQQ-WPWKLEDIEKGFEFAERSLRVKRVPAKGSGAAMC-AMMRESGFKT-------------------CKEELWAEDGVAEGLYATVQGEAGTRTSAWKELVSPWIAKGRVKVYPHCNVSRVIFD---------------------------------RKKVVLCAGAFDSPKILLLSGIGDPEELEEKTVPPLINNPNVGRHLQDHLILVAAFAARKPLRSCDTNDIGTHGMCHVTIRRESRRRH-------------------------------------GQILFKDSWNAWEVLPELCSGMVLGQNIGSEVISRVVLIVCKLVFYIPGIKWMLRQSLTAGICMMDPRSRGRVRLRSN-DPRDPPLIDPRYLSEESDLVLLHDLWSTFKSVKTSPSAKEWIL-AELLPGAPLMYGESMSWFKWWVKLACSSYFHPVGTCRMPSGKEWETRQSNELSSVSVVDAFLRVHGTVGLRIADCSVAPRIPSAPTQAMAYMIGYQAAQLMLGTRTPK 555
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A836CG94_9STRA (GMC_OxRdtase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG94_9STRA) HSP 1 Score: 221 bits (564), Expect = 1.440e-59 Identity = 211/692 (30.49%), Postives = 298/692 (43.06%), Query Frame = 1
Query: 10 SGPTVE--TADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEA------------GLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDG----------------------------------RAVGVEVV---ESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGS--YHGATYFSCA---------LPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQD-------LGPNICM-----LIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMA--------VCGAEILPGRIY-NYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALK 1836
S P +E DC++L+VG+G++GC SRLVR G KV+L+ G DA + PA +L N G L + + PQ L RR + G+GGGG++ ++ +Y RGR DY WPW L +E F ++EA G L A + G+ + + + +G W ++G+ + G R SAW AF+AP+ NL + D + +RV+++ G RAVGVE V ++A R R +LRL+ AE+ +CCGA +P+LLMLSG+GPR HLE + V VD P VG LQDH ++P + + G + G F A + XXXXXXXXXXXXXXX ++ P + +G G A +GPN AR +RA + + + D P+ M + + +S+G VRL S A P + DP YLS EDR A R VR + GAEILPG Y + D ++ + +H +C MG ++ +LRV G LRVADAS AP +P+ TQAM MM+GDRAAA+ L+
Sbjct: 7 SAPDIEDIVLDCEYLVVGSGAAGCAFVSRLVRQGAKVVLLTDGSIDAFR-DPGIQAPASFLSNLQRGWPLCDPHFSAPQPQLAGRRSLTFVGRGGGGSTLINACIYIRGRRSDYAA-WPWSLDFVEEGFAAVEAVLQPALIPAGVTGKALASAMSAGLDLAPAPQREDAVG---------------------------WVRDGVRA--DMHFSIHAGRRVSAWQAFMAPLVGRSNLTILDRHIATRVLLDGGGGXXXXXXXXXXXXDXXXXXXXXXXXXXXXGSAPRAVGVEAVVADDAAATRAAALRSGRRVRLRLSNPAAEVILCCGALYTPQLLMLSGIGPRAHLETHDINVEVDAPGVGAGLQDHPMVPVARELTRALAPHELAPGGHIFEGMVDFRVAPATGELVKDIGDSGGDGSXXXXXXXXXXXXXXXXXXXXXXXESSGDGNPPICFQLTLANGRGAASAQAFLVPLVGPNSRAGAGRAAAARVALERLKMRAVLALVPSLRDAAMPVA-------SMYLTLETPRSRGAVRLRSADPADLP-VFDPRYLSAEEDRAALRGALRAVRATAXXXXXXXXXXXXAADDIFGAEILPGPAYGDAAASDADLDRYIVEWSVTQWHAAASCAMGAALDA------ELRVRGARALRVADASAAPALPSANTQAMAMMVGDRAAALLLR 653
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: UPI0019D3DAD4 (choline dehydrogenase n=3 Tax=Bowmanella TaxID=366580 RepID=UPI0019D3DAD4) HSP 1 Score: 218 bits (556), Expect = 1.460e-59 Identity = 196/614 (31.92%), Postives = 286/614 (46.58%), Query Frame = 1
Query: 40 DFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHL-VLPTVNISK------PPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKN 1839
DF++VGAGS+G LA+RL KV L+E G D+ L + A R +G++ + T PQ L+NR + PRG+ GG+S+V+ Y RG ++DY+ HW W + + FK E E+A G+ P L + S +A T + + D++ +EG+G ++ T + G+R S+ A+++ NL + +V RV++E GRAVGVE + R RQ+ KE + + GA SP+LLMLSG+GP HLE G+ V VD P VGENLQDHL + +K P Y +G + YFS +S +++ G A+SS LA L P++ M F+ A+++ L W + G+ + + KS+GTVRL + D APPL+DP YLSH +DRQA +G ++ R+ R+ E LPG DE+ L F + +HPVGTCRMG V +L+V GV GLRV DASV P + T A +MI ++AAA+ +N
Sbjct: 8 DFIVVGAGSAGAALAARLSENPAWKVCLLEAGKPDSNPLIHIPFGLALLCRF----RGINWNYTTQPQTELNNRSLYWPRGKTLGGSSSVNAMCYIRGAKEDYD-HWQALGAEGWNWQSVLPYFKKAEDQQRGEDA-WHGVGGPLTVSDLRYVSAL--SQDFVQAGVATGLSELTDFNRDM--REGVGAYQV---TQQQGQRCSSAKAYLSQAKIRSNLTILTSGLVRRVLLEQGRAVGVEFEQRGQR----------RQIYAEKE---VLLSAGAINSPQLLMLSGIGPAAHLESLGIKVEVDCPGVGENLQDHLDAIVQCRTNKIAGYGVAPGALPQYVQGLWQ---YFS--------------------GHRGLMSSNIAEAGGFASSS---------------LANGL-PDLQM-----HFIPAILQDHGRHLAWGYGY------------GLHICYLYPKSRGTVRLQTA-DPEAPPLLDPRYLSHEDDRQAMLDGVKLARQILRQAAFEKYQ-PQEWLPGAAVE---SDEALLDFIKDKAETIYHPVGTCRMGDPQSPLTVVCPELKVKGVQGLRVVDASVMPTLIGGNTNAPTIMIAEKAAALIKQN 534
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A0Q8PWY2_9ACTN (Choline dehydrogenase n=8 Tax=Nocardioides TaxID=1839 RepID=A0A0Q8PWY2_9ACTN) HSP 1 Score: 214 bits (546), Expect = 5.260e-58 Identity = 201/625 (32.16%), Postives = 291/625 (46.56%), Query Frame = 1
Query: 34 DCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFI----TVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDY-----EEHWPWELKDIEASFKSIEAGLTLEEA--PTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFV---APVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLV------LPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWV---ADWVTPIHRVLRGSRGMLMVFTSI--KSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIAL 1833
+ D+++VG+GSSG ++A RL ++G V+L+E GP+D L +++ + + L F +VPQA LD RR+ APRG+ GGG+S+V+ +Y RG +Y E + W ++ +FK E E+A G + + ++ +E ++ TS T DY+ +EG+ RM++ GG R S+ +V AP T L+ + + V +V+I++GRA GVEVV+ + GGT R K E+ + G SP+LLMLSG+GP HL G+ VV D+P VGENL DHL +P+V P A T + G F +++V + VG F GLA D+ P+I + AL W + PI + G+ + T I KS+GT+RL S +D A PLID + +HP+D + +G M+R G V AEI PG G D LK S +H VGTCRMG ++D V DL+V G+ GLRVADAS+ P I T A C MIG++AA I L
Sbjct: 10 EADYVVVGSGSSGAIVAGRLAQSGASVILIEAGPSDDKGLHGYMSKVPGMIGPMHSEPKLEAMFDWGYRSVPQAGLDGRRMPAPRGKVGGGSSSVNGMVYVRGNRANYDSWAAEGNTGWSADEVNKAFKRYEDFEDGEDAYRGAGGPIKITRNKTPQEATLQFIQATS----DTLGVKVNDDYNGAE--QEGIS--RMQQNAA-GGLRYSSTRGYVHHLAPRT----LEFQTEVHVKKVVIKEGRATGVEVVDQGKK-----GGTH----RFIKAGKEVILSAGFINSPQLLMLSGIGPADHLASLGLDVVADLP-VGENLHDHLFHPMSFHVPSVRFRGNPWTFAKGTARNLSGRKSF--------------------------LDNSVFESVG---------------FIRSGLATDI-PDI----------------QLHALPWTYPSPNQDEPIRHMPDPRPGLTVFSTLIYPKSRGTIRLAS-SDPMAAPLIDYGFFTHPDDVEVLAQGTEMIREIMASAAFGGGV-KAEIHPGPSIPNGQDLRVALKERSTSV---YHGVGTCRMG--VDDRAVVGPDLKVRGIEGLRVADASIMPSITGGNTNAPCFMIGEKAAEIIL 546
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1H0TWD1_9PSEU (Choline dehydrogenase n=2 Tax=Actinokineospora TaxID=39845 RepID=A0A1H0TWD1_9PSEU) HSP 1 Score: 213 bits (543), Expect = 9.390e-58 Identity = 191/627 (30.46%), Postives = 286/627 (45.61%), Query Frame = 1
Query: 40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRP---ADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIE-----------AGLTLEEAPTTGIVVPS---CDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGAT--YFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVT---PIHRVLRGSRGMLMVFTSI--KSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCG---AEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
D+++VGAGS+GC +A RL +G +V+L+E GP D S+LV +P A + K L ++ +VPQA+ +RRI RG+ GG+S+++ ++ RG ++Y++ W W D+ SFK +E AG ++ G+ S + M E GVK++ DY+ E G + + GG R S+ ++ +PNL+V+ VSRV+IE GRA GVE++ + R + E+ + G F SP+LLMLSGVGP +HL +KG+ V D+P VG+NL DH+ +P ++K + H T YF+ + + V T VG F+ G R GAV ++AL W + PI + + ++ T I +S+GT+RL S D +A PLIDPAYL+ D + E ++VR E + G AE+ PG Y DD + ++ + +HPVGTCRMG +++ V LRV G+ GLRVADAS+ P I T A MMIG+ A
Sbjct: 5 DYVVVGAGSAGCAVARRLAESGAEVVLLEAGPVDK---SRLVRKPGMIAVFHNIPQLKKRLDWSYYSVPQASALDRRIPQTRGRVLGGSSSINGMIFVRGNRRNYDD-WAADGCAGWGFDDVLPSFKRMEDWADGGNDLRGAGGPIKVTRQQGMTAASEAFIEAMSETAGVKKND----------------DYNG-----EEQEGASVVQQNIDGGLRYSSSIGYLG--AGLPNLRVRTGVTVSRVVIEGGRATGVEILTKSGR-------------EVIHASREVVLSAGVFGSPQLLMLSGVGPAEHLRDKGIEVRADLP-VGDNLHDHMFVPMTYLTK----------SAQHRGTGPYFA--------------------------KGVLKEAVSGGTW------VGRTVFESVGFV------------RSSRAGAVPDIQLLALPWSYPFPNQDAPIRHNVDPRPALTVMATLIYPESRGTMRLASA-DPTAAPLIDPAYLTARRDSELLLESMKLVR----EIMANKVIAGDVTAELSPGPDYA---DDAALMRELPNRATTVYHPVGTCRMG--VDERAVVDPQLRVRGIEGLRVADASIMPSIVGGNTNAPAMMIGEHCA 526
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: UPI000B4AC7EC (choline dehydrogenase n=1 Tax=Lacimicrobium sp. SS2-24 TaxID=2005569 RepID=UPI000B4AC7EC) HSP 1 Score: 213 bits (541), Expect = 1.920e-57 Identity = 194/610 (31.80%), Postives = 282/610 (46.23%), Query Frame = 1
Query: 25 ETADCDFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSY---EAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHL-VLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
E D+++VG GS+G V+A+RL +V L+E G D L + A L F K ++ + T+PQ LD R++ PRG+ GG+S+++ Y RG +DY+ HW W+ + + FK E E+A GI P L ++ SP S EA + ++ D++ +EG+G ++ T + G+R S+ A++ P NL V A V+R++ E GRAVGVE+ + R Q LA++ E+ +C GA SPKLLMLSG+GP + L E G+ VV D+P VG+NLQDHL + +P G Y A ALPS S +++ G A + A SA+ V + ++ G L+ GF G+ + KS+G +RL AP LIDP YL+ +DR+ EG ++ RR ++ V G E +PG N DDE+ L F R +HPVGTCRMGQ + V DL+V G+ GLRV DASV P + T A +MI ++AA
Sbjct: 3 EKQSFDYIVVGGGSAGAVMAARLSEDPQCQVCLLEAGVPDRNPLIHIPFGLA--LLTRF--KSINWDYYTLPQTHLDQRQLYWPRGKTLGGSSSINAMCYIRGATQDYD-HWAELGATGWDWQSVLPFFKKSEDQARGEDA-FHGIGGP-----LGVSDLRYLSPLSQRFIEAGQSVGLAHIEDFNREN--REGVGAYQV---TQKDGQRCSSAKAYLKPAKQRSNLHVITRAPVNRILTEKGRAVGVELSAA-----------RGHQRVLARK--EVILCAGAINSPKLLMLSGIGPAEQLNECGIDVVTDLPGVGQNLQDHLDAIVQYRCQRP---------GGYGLAL---SALPS-----YLRAAWQYLCSRQGLFTSNIAEAGGFARAIASSALADVQFHFLPAILKEHGKQ---LVGGYGF------------------------------GLHVCCLYPKSRGEIRLNPRNPTGAP-LIDPRYLADEDDRRVMIEGVKLARRLLQDAAFD-DVDGQEFMPG---NDVRDDEAILAFIRQHAETIYHPVGTCRMGQAADSMTVVTPDLKVKGLDGLRVVDASVMPTLVGGNTNAPVIMIAEKAA 528
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1G8EK17_9MICO (Choline dehydrogenase n=1 Tax=Agrococcus jejuensis TaxID=399736 RepID=A0A1G8EK17_9MICO) HSP 1 Score: 211 bits (537), Expect = 5.490e-57 Identity = 196/639 (30.67%), Postives = 276/639 (43.19%), Query Frame = 1
Query: 40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAAT-------LSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEH-------WPWELK-----------DIEASFKSIEAGLTLEEAPTT---GIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAKDQMQARM 1872
+++++GAGS+G +A RLV AG V +VE GP D L+ P DW A +T PQ L R + PRG+ GG+S+++ +Y RG DY+ W W+ D +F L +E P + D +E G++R+ D++ +E L G TTTR G R SAW AFVAP+ P L V DA+VSRV++EDGRAVGVE V +A+ AE+ V GA SP +L+ SG+GP HL + G+ VV D+P VGENL DHL++ + SK P+ + N S++ A SS +C +G A DL P +C+ + P GA A A V P S+GT+RL S D + PL+DP + D +A + +VRR + + AE PG +D +F AR + + H VGTCRMG +D V +LRV GV+GLRVADASV P +P+ T A +MIG++A+ + L A +AR+
Sbjct: 7 EYVVIGAGSAGSAIARRLVDAGHSVHVVEAGPVDVDPDVHSPQGWPALLMSPNDW------------AVMTTPQQHLGGRVLYWPRGRVLGGSSSLNGMIYMRGDRSDYDTWEASGAVGWSWDEVLPYFRRSEDHVDGADAFHGEGGPLRVERIPDELRHPVAAAFVDAAVEA-GIERTD----------------DFN-----RERLDGAGFNHTTTRDGRRASAWQAFVAPILGSPLLTVTTDALVSRVLVEDGRAVGVEYVVDGV-------------THVARATAEVVVSAGAIGSPAILLRSGIGPAAHLGDLGITVVADVPGVGENLHDHLLVSVLYSSKEPVAAPRW--------------------------------------NLLESQLY--ARSS--------VC---EGPAPDLQP-LCIHVPYPTDGGA---APEQGYTLAAGIVRP------------------HSRGTIRLASA-DPTVAPLVDPNVFADERDVEAMVDAIELVRRVGAQDAFA-ELRDAEFAPGPDVTSRDDLRAF---ARATVGTYHHQVGTCRMGG--DDLAVVDPELRVRGVAGLRVADASVMPMVPSANTNAPSIMIGEKASDLLLAAAGAGADAEARL 518
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A0Q8Q3F8_9ACTN (Choline dehydrogenase n=1 Tax=Nocardioides sp. Root190 TaxID=1736488 RepID=A0A0Q8Q3F8_9ACTN) HSP 1 Score: 210 bits (534), Expect = 1.060e-56 Identity = 187/615 (30.41%), Postives = 266/615 (43.25%), Query Frame = 1
Query: 40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAAT-------LSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYE-------EHWPWELKDIEASFKSIEAGLTLE-EAPTTGIVVPSCDRMLEEIGVKRSSPTSYE-AESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALK 1836
++LIVGAGSSG LA RL+ AG V ++E GP D A L+ DW A +TVPQ DNR++ PRG+ GG+S+++ +Y RG DY+ W W+ D+ F E L E TG +P + + PT+ E+ A + + G+G T R G R SAW +FVAPV P L+V A++ RVI+E+GRAVGVE + R R+A+ E+ + G SP +L+ SG+GP HL E G+A VVD+P VGENL DH ++ V S P+ E + A +++ + + G A P + V DG + + G + A ++A +S+GT+RL S +D PL+DP L+ P D +A C+ M R R+ C E+ PG E FAR S + H VGTCRMG ++D V LRV GV GLRV DAS+ P +P+ T A +M+G++AA + L+
Sbjct: 11 EYLIVGAGSSGSALARRLLDAGRTVHVLEAGPVDTADEIHSPQGWPMLLAGEQDW------------AVMTVPQEHADNRQLFWPRGKVLGGSSSLNGMIYMRGHSSDYDGWAAQGCTGWAWD--DVRPLFLRSEDHLAGSGEHHATGGPLPVSP-------ITKPHPTAQAFVEAGVAAGHKRNDDFNGVDMRGIG---FNEMTVRDGRRMSAWQSFVAPVLDNPRLRVTTSAIIDRVIVEEGRAVGVEYLVDGER-------------RVARAAMEVVLSAGTIGSPAILLRSGIGPSSHLAEVGIAPVVDLPGVGENLHDHPLISVVYESTNPLPAG---ENNLLEAQFYADS----------------------------TGWTGEAPDLQPLFLHLVYPADGYEMPEH---------------GYTIAAGIVAP---------------------------RSRGTLRLAS-SDPLVQPLVDPNILADPYDLEALCDAIEMSREIGRQAALD-DWCEREVAPGPE---ATTREDIRAFARRSVGTYHHQVGTCRMG--VDDLAVVDPQLRVRGVEGLRVVDASIMPVVPSCNTNAPAIMVGEKAADLMLR 508
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1I2EG20_9DELT (Choline dehydrogenase n=2 Tax=Nannocystis TaxID=53 RepID=A0A1I2EG20_9DELT) HSP 1 Score: 209 bits (532), Expect = 3.690e-56 Identity = 193/600 (32.17%), Postives = 260/600 (43.33%), Query Frame = 1
Query: 40 DFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP---WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGR-AVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGA-EILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
D++I+G GS+GCVLA RL L+VLL+E G D A R AD +++F L +VPQ R + G+G GG+ +++ +Y RG E D+ W W D+ +++ +E L + T +C EE+G R D E LG +R RG +R+SA+ AFV P NL V+ A R++++D R V VE E GGTR R A+ + E +C GA SPKLLMLSGVGPR L G+ D+P VGENL DH P V + D +G F ALP A +MV P+ V + L + + + M RPGF + R + G++++ KS+GTVRL S D IDPAY + PED +A G R+ RR G+ G E+LPG D + F R + +H GTCRMGQ + SVV LRV GV LRVADAS+ P +P + A MMIG RAA
Sbjct: 9 DYVILGGGSAGCVLAGRLSEDPSLRVLLLETG--DRAERHPESLR-ADGYKDAFVNDDLLHHRFSVPQRHCGRRPLFLGSGRGMGGSGSINAMVYLRGSEADFRA-WDVPGWGWSDVVPAYEQLERVLDVRSREPTEFT-EACIAGAEEVGFHRE--------------RDLDRGEL------LGALGYERMNYRGEQRRSAYVAFVQPHLDRINLVVRTGAHAHRLVLDDRRRVVAVEYEE---------GGTR----RTAQVRREAVLCAGALESPKLLMLSGVGPRDVLRAHGIEPAFDLPGVGENLHDH---PNVQLFYFGKRAVDCNYPQLYG---FHRALPESDLPADQADTCYVFYPARSSFREATMRMV-------PALTVPPALYRRTRLPRLVKAGVGMAF-RPGF---------------------VKRAVERVYGVVVILGKPKSRGTVRLASA-DPREQAAIDPAYFADPEDMRAMIAGVRLARRIA--AAEGLRPWGGPEVLPGAFVR---SDAALAAFVRRMAMTTYHYAGTCRMGQ-VPGSVVDPQ-LRVRGVENLRVADASIIPEVPVSALNAPSMMIGWRAA 527 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15653.1 >prot_C-linearis_contig8.15653.1 ID=prot_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=634bp MVHSGPTVETADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATback to top mRNA from alignment at C-linearis_contig8:2219037..2223922- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15653.1 ID=mRNA_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4886bp|location=Sequence derived from alignment at C-linearis_contig8:2219037..2223922- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2219037..2223922- >mRNA_C-linearis_contig8.15653.1 ID=mRNA_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3804bp|location=Sequence derived from alignment at C-linearis_contig8:2219037..2223922- (Chordaria linearis ClinC8C monoicous)back to top |