mRNA_C-linearis_contig8.15653.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15653.1
Unique NamemRNA_C-linearis_contig8.15653.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 820 bits (2117), Expect = 3.500e-292
Identity = 446/642 (69.47%), Postives = 511/642 (79.60%), Query Frame = 1
Query:    1 MVHSGPTVE-TADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSS-PTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGG----TRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPS---AVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAKDQMQARMLETVSSSVD 1899
            M  + PT + T DCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADA+TL+K+V RP+ W+  + +G+GLSEAF TVPQA L  R + A  G GGGG+SNV+ GLYQRGRE+DYE+HWPWELKDIEASFKSIEA LTLEE PTTG V PSC RMLEE+G K    P+S  +E          Y+EPTWT+ GLGGC MKRTTTRGGERQ+AW+AFV PVT+MPNL++KDDA VSRVIIE GRAVGVEVVESAP  W         TR RQLRLAK++AEI VCCGAFRSPKLLMLSGVGPR+HLEEKGV VVVDMPHVGENLQDHL+L T NISK  M EADYTE S+H ATYFSCALP        XXXXXXXXXXXXXX          + + APS   AVVGVL  DG  L ++L   I ML  RPG  GAV R  V+A+ WVA W+TP+ R+LRG+R  +M+ TS+KSKGTVRL SGTDA+APP+IDP Y SHP+DR+A  E WR +RRAKRETTTG AV G E+LPG+ +N  +DDESFLKFAR  CLP+FHPVGTCRMG+ ++DSVVSADDLRVHG+SGLRVADASVAPHIPATPTQAMCMMIGDRAAAIAL++RFAK+Q++ARM+ET SSS++
Sbjct:    1 MAVASPTADDTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGREEDYEKHWPWELKDIEASFKSIEAELTLEELPTTGTVAPSCARMLEEVGFKSPPRPSSSRSED--------GYTEPTWTRLGLGGCPMKRTTTRGGERQTAWSAFVRPVTTMPNLKIKDDAAVSRVIIEGGRAVGVEVVESAPG-WXXXXXXXXRTRVRQLRLAKDRAEIVVCCGAFRSPKLLMLSGVGPRRHLEEKGVPVVVDMPHVGENLQDHLILATSNISKTRMTEADYTEDSFHSATYFSCALPQEAAAPAGXXXXXXXXXXXXXXXXX-------SRTEAPSPGAAVVGVLHGDGSFLVRNLSGLITMLFVRPGLFGAVGRGVVLAVIWVATWLTPLTRILRGTRCNVMLVTSVKSKGTVRLASGTDAAAPPVIDPGYFSHPQDRRAMLECWRTIRRAKRETTTGRAVFGFELLPGKKFNDCDDDESFLKFAREFCLPYFHPVGTCRMGREVQDSVVSADDLRVHGISGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALRDRFAKEQVKARMIETASSSIN 626          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: L1JH16_GUITC (GMC_OxRdtase_N domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JH16_GUITC)

HSP 1 Score: 258 bits (660), Expect = 3.180e-74
Identity = 191/616 (31.01%), Postives = 277/616 (44.97%), Query Frame = 1
Query:   37 CDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGA-VVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMED--------SVVSADD--LRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAK 1851
            CD+L+VG G S C L + L  AG  V++VE G A+     K+V  P  W   +  G+ +S  + TVPQ A+ ++ + A RG+G GGT NV+  ++ RGR +DY++ WPW+L+DIE  F+  E  L ++  P  G     C  M+ E G K                      E  W ++G+            G R SAW   V+P  +   ++V     VSRVI +                                 + ++ +C GAF SPK+L+LSG+G  + LEEK V  +++ P+VG +LQDHL+L     ++ P+   D  +   HG  + +    S                                         G + F     A ++ P +C  +     +G+ V+   V+ +C +  ++  I  +LR S    +     +S+G VRL S  D   PPLIDP YLS   D     + W   +  K   +    +  AE+LPG    YG     F  + + +C  +FHPVGTCRM  G E         S VS  D  LRVHG  GLR+AD SVAP IP+ PTQAM  MIG +AA + L  R  K
Sbjct:   34 CDYLVVGGGCSSCSLVACLAAAGKSVVVVEAGGAEPWE-RKVVDDPQSWFAAASHGRPVSRLYRTVPQLAVLSKLMPAFRGEGFGGTGNVNACIWCRGRREDYQQ-WPWKLEDIEKGFEFAERSLRVKRVPAKGSGAAMC-AMMRESGFKT-------------------CKEELWAEDGVAEGLYATVQGEAGTRTSAWKELVSPWIAKGRVKVYPHCNVSRVIFD---------------------------------RKKVVLCAGAFDSPKILLLSGIGDPEELEEKTVPPLINNPNVGRHLQDHLILVAAFAARKPLRSCDTNDIGTHGMCHVTIRRESRRRH-------------------------------------GQILFKDSWNAWEVLPELCSGMVLGQNIGSEVISRVVLIVCKLVFYIPGIKWMLRQSLTAGICMMDPRSRGRVRLRSN-DPRDPPLIDPRYLSEESDLVLLHDLWSTFKSVKTSPSAKEWIL-AELLPGAPLMYGESMSWFKWWVKLACSSYFHPVGTCRMPSGKEWETRQSNELSSVSVVDAFLRVHGTVGLRIADCSVAPRIPSAPTQAMAYMIGYQAAQLMLGTRTPK 555          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A836CG94_9STRA (GMC_OxRdtase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG94_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.440e-59
Identity = 211/692 (30.49%), Postives = 298/692 (43.06%), Query Frame = 1
Query:   10 SGPTVE--TADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEA------------GLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDG----------------------------------RAVGVEVV---ESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGS--YHGATYFSCA---------LPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQD-------LGPNICM-----LIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMA--------VCGAEILPGRIY-NYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALK 1836
            S P +E    DC++L+VG+G++GC   SRLVR G KV+L+  G  DA      +  PA +L N   G  L +   + PQ  L  RR +   G+GGGG++ ++  +Y RGR  DY   WPW L  +E  F ++EA            G  L  A + G+ +    +  + +G                           W ++G+        +   G R SAW AF+AP+    NL + D  + +RV+++ G                                  RAVGVE V   ++A  R       R  +LRL+   AE+ +CCGA  +P+LLMLSG+GPR HLE   + V VD P VG  LQDH ++P        +   +   G   + G   F  A         +        XXXXXXXXXXXXXXX         ++    P     +   +G G A         +GPN          AR       +RA +  +  + D   P+         M +   + +S+G VRL S   A  P + DP YLS  EDR A     R VR                   + GAEILPG  Y +    D    ++     +  +H   +C MG  ++       +LRV G   LRVADAS AP +P+  TQAM MM+GDRAAA+ L+
Sbjct:    7 SAPDIEDIVLDCEYLVVGSGAAGCAFVSRLVRQGAKVVLLTDGSIDAFR-DPGIQAPASFLSNLQRGWPLCDPHFSAPQPQLAGRRSLTFVGRGGGGSTLINACIYIRGRRSDYAA-WPWSLDFVEEGFAAVEAVLQPALIPAGVTGKALASAMSAGLDLAPAPQREDAVG---------------------------WVRDGVRA--DMHFSIHAGRRVSAWQAFMAPLVGRSNLTILDRHIATRVLLDGGGGXXXXXXXXXXXXDXXXXXXXXXXXXXXXGSAPRAVGVEAVVADDAAATRAAALRSGRRVRLRLSNPAAEVILCCGALYTPQLLMLSGIGPRAHLETHDINVEVDAPGVGAGLQDHPMVPVARELTRALAPHELAPGGHIFEGMVDFRVAPATGELVKDIGDSGGDGSXXXXXXXXXXXXXXXXXXXXXXXESSGDGNPPICFQLTLANGRGAASAQAFLVPLVGPNSRAGAGRAAAARVALERLKMRAVLALVPSLRDAAMPVA-------SMYLTLETPRSRGAVRLRSADPADLP-VFDPRYLSAEEDRAALRGALRAVRATAXXXXXXXXXXXXAADDIFGAEILPGPAYGDAAASDADLDRYIVEWSVTQWHAAASCAMGAALDA------ELRVRGARALRVADASAAPALPSANTQAMAMMVGDRAAALLLR 653          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: UPI0019D3DAD4 (choline dehydrogenase n=3 Tax=Bowmanella TaxID=366580 RepID=UPI0019D3DAD4)

HSP 1 Score: 218 bits (556), Expect = 1.460e-59
Identity = 196/614 (31.92%), Postives = 286/614 (46.58%), Query Frame = 1
Query:   40 DFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHL-VLPTVNISK------PPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKN 1839
            DF++VGAGS+G  LA+RL      KV L+E G  D+  L  +    A   R     +G++  + T PQ  L+NR +  PRG+  GG+S+V+   Y RG ++DY+ HW       W  + +   FK  E     E+A   G+  P     L  +     S    +A   T  + + D++     +EG+G  ++   T + G+R S+  A+++      NL +    +V RV++E GRAVGVE  +   R          RQ+   KE   + +  GA  SP+LLMLSG+GP  HLE  G+ V VD P VGENLQDHL  +     +K       P     Y +G +    YFS                          +S +++  G A+SS               LA  L P++ M      F+ A+++     L W   +            G+ + +   KS+GTVRL +  D  APPL+DP YLSH +DRQA  +G ++ R+  R+          E LPG        DE+ L F +      +HPVGTCRMG       V   +L+V GV GLRV DASV P +    T A  +MI ++AAA+  +N
Sbjct:    8 DFIVVGAGSAGAALAARLSENPAWKVCLLEAGKPDSNPLIHIPFGLALLCRF----RGINWNYTTQPQTELNNRSLYWPRGKTLGGSSSVNAMCYIRGAKEDYD-HWQALGAEGWNWQSVLPYFKKAEDQQRGEDA-WHGVGGPLTVSDLRYVSAL--SQDFVQAGVATGLSELTDFNRDM--REGVGAYQV---TQQQGQRCSSAKAYLSQAKIRSNLTILTSGLVRRVLLEQGRAVGVEFEQRGQR----------RQIYAEKE---VLLSAGAINSPQLLMLSGIGPAAHLESLGIKVEVDCPGVGENLQDHLDAIVQCRTNKIAGYGVAPGALPQYVQGLWQ---YFS--------------------GHRGLMSSNIAEAGGFASSS---------------LANGL-PDLQM-----HFIPAILQDHGRHLAWGYGY------------GLHICYLYPKSRGTVRLQTA-DPEAPPLLDPRYLSHEDDRQAMLDGVKLARQILRQAAFEKYQ-PQEWLPGAAVE---SDEALLDFIKDKAETIYHPVGTCRMGDPQSPLTVVCPELKVKGVQGLRVVDASVMPTLIGGNTNAPTIMIAEKAAALIKQN 534          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A0Q8PWY2_9ACTN (Choline dehydrogenase n=8 Tax=Nocardioides TaxID=1839 RepID=A0A0Q8PWY2_9ACTN)

HSP 1 Score: 214 bits (546), Expect = 5.260e-58
Identity = 201/625 (32.16%), Postives = 291/625 (46.56%), Query Frame = 1
Query:   34 DCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFI----TVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDY-----EEHWPWELKDIEASFKSIEAGLTLEEA--PTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFV---APVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLV------LPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWV---ADWVTPIHRVLRGSRGMLMVFTSI--KSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIAL 1833
            + D+++VG+GSSG ++A RL ++G  V+L+E GP+D   L   +++    +    +   L   F     +VPQA LD RR+ APRG+ GGG+S+V+  +Y RG   +Y     E +  W   ++  +FK  E     E+A     G +  + ++  +E  ++    TS     T       DY+     +EG+   RM++    GG R S+   +V   AP T    L+ + +  V +V+I++GRA GVEVV+   +     GGT     R  K   E+ +  G   SP+LLMLSG+GP  HL   G+ VV D+P VGENL DHL       +P+V     P   A  T  +  G   F                           +++V + VG               F   GLA D+ P+I                 + AL W     +   PI  +     G+ +  T I  KS+GT+RL S +D  A PLID  + +HP+D +   +G  M+R        G  V  AEI PG     G D    LK    S    +H VGTCRMG  ++D  V   DL+V G+ GLRVADAS+ P I    T A C MIG++AA I L
Sbjct:   10 EADYVVVGSGSSGAIVAGRLAQSGASVILIEAGPSDDKGLHGYMSKVPGMIGPMHSEPKLEAMFDWGYRSVPQAGLDGRRMPAPRGKVGGGSSSVNGMVYVRGNRANYDSWAAEGNTGWSADEVNKAFKRYEDFEDGEDAYRGAGGPIKITRNKTPQEATLQFIQATS----DTLGVKVNDDYNGAE--QEGIS--RMQQNAA-GGLRYSSTRGYVHHLAPRT----LEFQTEVHVKKVVIKEGRATGVEVVDQGKK-----GGTH----RFIKAGKEVILSAGFINSPQLLMLSGIGPADHLASLGLDVVADLP-VGENLHDHLFHPMSFHVPSVRFRGNPWTFAKGTARNLSGRKSF--------------------------LDNSVFESVG---------------FIRSGLATDI-PDI----------------QLHALPWTYPSPNQDEPIRHMPDPRPGLTVFSTLIYPKSRGTIRLAS-SDPMAAPLIDYGFFTHPDDVEVLAQGTEMIREIMASAAFGGGV-KAEIHPGPSIPNGQDLRVALKERSTSV---YHGVGTCRMG--VDDRAVVGPDLKVRGIEGLRVADASIMPSITGGNTNAPCFMIGEKAAEIIL 546          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1H0TWD1_9PSEU (Choline dehydrogenase n=2 Tax=Actinokineospora TaxID=39845 RepID=A0A1H0TWD1_9PSEU)

HSP 1 Score: 213 bits (543), Expect = 9.390e-58
Identity = 191/627 (30.46%), Postives = 286/627 (45.61%), Query Frame = 1
Query:   40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAATLSKLVTRP---ADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIE-----------AGLTLEEAPTTGIVVPS---CDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGAT--YFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVT---PIHRVLRGSRGMLMVFTSI--KSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCG---AEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
            D+++VGAGS+GC +A RL  +G +V+L+E GP D    S+LV +P   A +       K L  ++ +VPQA+  +RRI   RG+  GG+S+++  ++ RG  ++Y++ W       W   D+  SFK +E           AG  ++     G+   S    + M E  GVK++                 DY+      E   G  + +    GG R S+   ++     +PNL+V+    VSRV+IE GRA GVE++  + R              +     E+ +  G F SP+LLMLSGVGP +HL +KG+ V  D+P VG+NL DH+ +P   ++K           + H  T  YF+                             + + V   T       VG   F+  G              R    GAV    ++AL W   +     PI   +     + ++ T I  +S+GT+RL S  D +A PLIDPAYL+   D +   E  ++VR    E      + G   AE+ PG  Y    DD + ++   +     +HPVGTCRMG  +++  V    LRV G+ GLRVADAS+ P I    T A  MMIG+  A
Sbjct:    5 DYVVVGAGSAGCAVARRLAESGAEVVLLEAGPVDK---SRLVRKPGMIAVFHNIPQLKKRLDWSYYSVPQASALDRRIPQTRGRVLGGSSSINGMIFVRGNRRNYDD-WAADGCAGWGFDDVLPSFKRMEDWADGGNDLRGAGGPIKVTRQQGMTAASEAFIEAMSETAGVKKND----------------DYNG-----EEQEGASVVQQNIDGGLRYSSSIGYLG--AGLPNLRVRTGVTVSRVVIEGGRATGVEILTKSGR-------------EVIHASREVVLSAGVFGSPQLLMLSGVGPAEHLRDKGIEVRADLP-VGDNLHDHMFVPMTYLTK----------SAQHRGTGPYFA--------------------------KGVLKEAVSGGTW------VGRTVFESVGFV------------RSSRAGAVPDIQLLALPWSYPFPNQDAPIRHNVDPRPALTVMATLIYPESRGTMRLASA-DPTAAPLIDPAYLTARRDSELLLESMKLVR----EIMANKVIAGDVTAELSPGPDYA---DDAALMRELPNRATTVYHPVGTCRMG--VDERAVVDPQLRVRGIEGLRVADASIMPSIVGGNTNAPAMMIGEHCA 526          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: UPI000B4AC7EC (choline dehydrogenase n=1 Tax=Lacimicrobium sp. SS2-24 TaxID=2005569 RepID=UPI000B4AC7EC)

HSP 1 Score: 213 bits (541), Expect = 1.920e-57
Identity = 194/610 (31.80%), Postives = 282/610 (46.23%), Query Frame = 1
Query:   25 ETADCDFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP------WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSY---EAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHL-VLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
            E    D+++VG GS+G V+A+RL      +V L+E G  D   L  +    A  L   F  K ++  + T+PQ  LD R++  PRG+  GG+S+++   Y RG  +DY+ HW       W+ + +   FK  E     E+A   GI  P     L    ++  SP S    EA  +    ++ D++     +EG+G  ++   T + G+R S+  A++ P     NL V   A V+R++ E GRAVGVE+  +           R  Q  LA++  E+ +C GA  SPKLLMLSG+GP + L E G+ VV D+P VG+NLQDHL  +      +P         G Y  A     ALPS                      S +++  G A + A SA+  V       + ++ G     L+   GF                              G+ +     KS+G +RL       AP LIDP YL+  +DR+   EG ++ RR  ++      V G E +PG   N   DDE+ L F R      +HPVGTCRMGQ  +   V   DL+V G+ GLRV DASV P +    T A  +MI ++AA
Sbjct:    3 EKQSFDYIVVGGGSAGAVMAARLSEDPQCQVCLLEAGVPDRNPLIHIPFGLA--LLTRF--KSINWDYYTLPQTHLDQRQLYWPRGKTLGGSSSINAMCYIRGATQDYD-HWAELGATGWDWQSVLPFFKKSEDQARGEDA-FHGIGGP-----LGVSDLRYLSPLSQRFIEAGQSVGLAHIEDFNREN--REGVGAYQV---TQKDGQRCSSAKAYLKPAKQRSNLHVITRAPVNRILTEKGRAVGVELSAA-----------RGHQRVLARK--EVILCAGAINSPKLLMLSGIGPAEQLNECGIDVVTDLPGVGQNLQDHLDAIVQYRCQRP---------GGYGLAL---SALPS-----YLRAAWQYLCSRQGLFTSNIAEAGGFARAIASSALADVQFHFLPAILKEHGKQ---LVGGYGF------------------------------GLHVCCLYPKSRGEIRLNPRNPTGAP-LIDPRYLADEDDRRVMIEGVKLARRLLQDAAFD-DVDGQEFMPG---NDVRDDEAILAFIRQHAETIYHPVGTCRMGQAADSMTVVTPDLKVKGLDGLRVVDASVMPTLVGGNTNAPVIMIAEKAA 528          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1G8EK17_9MICO (Choline dehydrogenase n=1 Tax=Agrococcus jejuensis TaxID=399736 RepID=A0A1G8EK17_9MICO)

HSP 1 Score: 211 bits (537), Expect = 5.490e-57
Identity = 196/639 (30.67%), Postives = 276/639 (43.19%), Query Frame = 1
Query:   40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAAT-------LSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEH-------WPWELK-----------DIEASFKSIEAGLTLEEAPTT---GIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALKNRFAKDQMQARM 1872
            +++++GAGS+G  +A RLV AG  V +VE GP D             L+  P DW            A +T PQ  L  R +  PRG+  GG+S+++  +Y RG   DY+         W W+             D   +F      L +E  P      +     D  +E  G++R+                 D++     +E L G     TTTR G R SAW AFVAP+   P L V  DA+VSRV++EDGRAVGVE V                   +A+  AE+ V  GA  SP +L+ SG+GP  HL + G+ VV D+P VGENL DHL++  +  SK P+    +                                      N   S++   A SS        +C   +G A DL P +C+ +  P   GA   A        A  V P                   S+GT+RL S  D +  PL+DP   +   D +A  +   +VRR   +      +  AE  PG      +D  +F   AR +   + H VGTCRMG   +D  V   +LRV GV+GLRVADASV P +P+  T A  +MIG++A+ + L    A    +AR+
Sbjct:    7 EYVVIGAGSAGSAIARRLVDAGHSVHVVEAGPVDVDPDVHSPQGWPALLMSPNDW------------AVMTTPQQHLGGRVLYWPRGRVLGGSSSLNGMIYMRGDRSDYDTWEASGAVGWSWDEVLPYFRRSEDHVDGADAFHGEGGPLRVERIPDELRHPVAAAFVDAAVEA-GIERTD----------------DFN-----RERLDGAGFNHTTTRDGRRASAWQAFVAPILGSPLLTVTTDALVSRVLVEDGRAVGVEYVVDGV-------------THVARATAEVVVSAGAIGSPAILLRSGIGPAAHLGDLGITVVADVPGVGENLHDHLLVSVLYSSKEPVAAPRW--------------------------------------NLLESQLY--ARSS--------VC---EGPAPDLQP-LCIHVPYPTDGGA---APEQGYTLAAGIVRP------------------HSRGTIRLASA-DPTVAPLVDPNVFADERDVEAMVDAIELVRRVGAQDAFA-ELRDAEFAPGPDVTSRDDLRAF---ARATVGTYHHQVGTCRMGG--DDLAVVDPELRVRGVAGLRVADASVMPMVPSANTNAPSIMIGEKASDLLLAAAGAGADAEARL 518          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A0Q8Q3F8_9ACTN (Choline dehydrogenase n=1 Tax=Nocardioides sp. Root190 TaxID=1736488 RepID=A0A0Q8Q3F8_9ACTN)

HSP 1 Score: 210 bits (534), Expect = 1.060e-56
Identity = 187/615 (30.41%), Postives = 266/615 (43.25%), Query Frame = 1
Query:   40 DFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAAT-------LSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYE-------EHWPWELKDIEASFKSIEAGLTLE-EAPTTGIVVPSCDRMLEEIGVKRSSPTSYE-AESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALK 1836
            ++LIVGAGSSG  LA RL+ AG  V ++E GP D A           L+    DW            A +TVPQ   DNR++  PRG+  GG+S+++  +Y RG   DY+         W W+  D+   F   E  L    E   TG  +P          + +  PT+    E+  A  +  +         G+G       T R G R SAW +FVAPV   P L+V   A++ RVI+E+GRAVGVE +    R             R+A+   E+ +  G   SP +L+ SG+GP  HL E G+A VVD+P VGENL DH ++  V  S  P+      E +   A +++ +                            +   G A    P  +  V   DG  + +                G  + A ++A                            +S+GT+RL S +D    PL+DP  L+ P D +A C+   M R   R+       C  E+ PG         E    FAR S   + H VGTCRMG  ++D  V    LRV GV GLRV DAS+ P +P+  T A  +M+G++AA + L+
Sbjct:   11 EYLIVGAGSSGSALARRLLDAGRTVHVLEAGPVDTADEIHSPQGWPMLLAGEQDW------------AVMTVPQEHADNRQLFWPRGKVLGGSSSLNGMIYMRGHSSDYDGWAAQGCTGWAWD--DVRPLFLRSEDHLAGSGEHHATGGPLPVSP-------ITKPHPTAQAFVEAGVAAGHKRNDDFNGVDMRGIG---FNEMTVRDGRRMSAWQSFVAPVLDNPRLRVTTSAIIDRVIVEEGRAVGVEYLVDGER-------------RVARAAMEVVLSAGTIGSPAILLRSGIGPSSHLAEVGIAPVVDLPGVGENLHDHPLISVVYESTNPLPAG---ENNLLEAQFYADS----------------------------TGWTGEAPDLQPLFLHLVYPADGYEMPEH---------------GYTIAAGIVAP---------------------------RSRGTLRLAS-SDPLVQPLVDPNILADPYDLEALCDAIEMSREIGRQAALD-DWCEREVAPGPE---ATTREDIRAFARRSVGTYHHQVGTCRMG--VDDLAVVDPQLRVRGVEGLRVVDASIMPVVPSCNTNAPAIMVGEKAADLMLR 508          
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Match: A0A1I2EG20_9DELT (Choline dehydrogenase n=2 Tax=Nannocystis TaxID=53 RepID=A0A1I2EG20_9DELT)

HSP 1 Score: 209 bits (532), Expect = 3.690e-56
Identity = 193/600 (32.17%), Postives = 260/600 (43.33%), Query Frame = 1
Query:   40 DFLIVGAGSSGCVLASRLVR-AGLKVLLVEKGPADAATLSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTSNVSVGLYQRGREKDYEEHWP---WELKDIEASFKSIEAGLTLEEAPTTGIVVPSCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKRTTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGR-AVGVEVVESAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHLEEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYFSCALPSPXXXXXXXXXXXXXXXXXXXXNSAVSKMVGAATSSAPSAVVGVLCFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVLRGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEGWRMVRRAKRETTTGMAVCGA-EILPGRIYNYGNDDESFLKFARHSCLPFFHPVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCMMIGDRAA 1821
            D++I+G GS+GCVLA RL     L+VLL+E G  D A       R AD  +++F    L     +VPQ     R +    G+G GG+ +++  +Y RG E D+   W    W   D+  +++ +E  L +     T     +C    EE+G  R                  D  E       LG    +R   RG +R+SA+ AFV P     NL V+  A   R++++D R  V VE  E         GGTR    R A+ + E  +C GA  SPKLLMLSGVGPR  L   G+    D+P VGENL DH   P V +        D      +G   F  ALP                        A  +MV       P+  V    +    L + +   + M   RPGF                     + R +    G++++    KS+GTVRL S  D      IDPAY + PED +A   G R+ RR       G+   G  E+LPG        D +   F R   +  +H  GTCRMGQ +  SVV    LRV GV  LRVADAS+ P +P +   A  MMIG RAA
Sbjct:    9 DYVILGGGSAGCVLAGRLSEDPSLRVLLLETG--DRAERHPESLR-ADGYKDAFVNDDLLHHRFSVPQRHCGRRPLFLGSGRGMGGSGSINAMVYLRGSEADFRA-WDVPGWGWSDVVPAYEQLERVLDVRSREPTEFT-EACIAGAEEVGFHRE--------------RDLDRGEL------LGALGYERMNYRGEQRRSAYVAFVQPHLDRINLVVRTGAHAHRLVLDDRRRVVAVEYEE---------GGTR----RTAQVRREAVLCAGALESPKLLMLSGVGPRDVLRAHGIEPAFDLPGVGENLHDH---PNVQLFYFGKRAVDCNYPQLYG---FHRALPESDLPADQADTCYVFYPARSSFREATMRMV-------PALTVPPALYRRTRLPRLVKAGVGMAF-RPGF---------------------VKRAVERVYGVVVILGKPKSRGTVRLASA-DPREQAAIDPAYFADPEDMRAMIAGVRLARRIA--AAEGLRPWGGPEVLPGAFVR---SDAALAAFVRRMAMTTYHYAGTCRMGQ-VPGSVVDPQ-LRVRGVENLRVADASIIPEVPVSALNAPSMMIGWRAA 527          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G8_ECTSI3.500e-29269.47Glucose-methanol-choline oxidoreductase n=2 Tax=Ec... [more]
L1JH16_GUITC3.180e-7431.01GMC_OxRdtase_N domain-containing protein n=1 Tax=G... [more]
A0A836CG94_9STRA1.440e-5930.49GMC_OxRdtase_N domain-containing protein n=1 Tax=T... [more]
UPI0019D3DAD41.460e-5931.92choline dehydrogenase n=3 Tax=Bowmanella TaxID=366... [more]
A0A0Q8PWY2_9ACTN5.260e-5832.16Choline dehydrogenase n=8 Tax=Nocardioides TaxID=1... [more]
A0A1H0TWD1_9PSEU9.390e-5830.46Choline dehydrogenase n=2 Tax=Actinokineospora Tax... [more]
UPI000B4AC7EC1.920e-5731.80choline dehydrogenase n=1 Tax=Lacimicrobium sp. SS... [more]
A0A1G8EK17_9MICO5.490e-5730.67Choline dehydrogenase n=1 Tax=Agrococcus jejuensis... [more]
A0A0Q8Q3F8_9ACTN1.060e-5630.41Choline dehydrogenase n=1 Tax=Nocardioides sp. Roo... [more]
A0A1I2EG20_9DELT3.690e-5632.17Choline dehydrogenase n=2 Tax=Nannocystis TaxID=53... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2219037..2223922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score823.5
Seed ortholog evalue6.5e-236
Seed eggNOG ortholog2880.D7G2G8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2001
Cds size1902
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15653.1prot_C-linearis_contig8.15653.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2219136..2223922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.8753893-UTR-C-linearis_contig8:2219036..22191351622930543.8753893-UTR-C-linearis_contig8:2219036..2219135Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2219037..2219135 -
1690881123.984329-UTR-C-linearis_contig8:2219036..22191351690881123.984329-UTR-C-linearis_contig8:2219036..2219135Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2219037..2219135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.8895507-CDS-C-linearis_contig8:2219135..22191741622930543.8895507-CDS-C-linearis_contig8:2219135..2219174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2219136..2219174 -
1690881124.0005958-CDS-C-linearis_contig8:2219135..22191741690881124.0005958-CDS-C-linearis_contig8:2219135..2219174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2219136..2219174 -
1622930543.9058993-CDS-C-linearis_contig8:2219468..22196161622930543.9058993-CDS-C-linearis_contig8:2219468..2219616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2219469..2219616 -
1690881124.0097227-CDS-C-linearis_contig8:2219468..22196161690881124.0097227-CDS-C-linearis_contig8:2219468..2219616Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2219469..2219616 -
1622930543.9253821-CDS-C-linearis_contig8:2220196..22203311622930543.9253821-CDS-C-linearis_contig8:2220196..2220331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2220197..2220331 -
1690881124.0227559-CDS-C-linearis_contig8:2220196..22203311690881124.0227559-CDS-C-linearis_contig8:2220196..2220331Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2220197..2220331 -
1622930543.9478643-CDS-C-linearis_contig8:2220912..22215531622930543.9478643-CDS-C-linearis_contig8:2220912..2221553Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2220913..2221553 -
1690881124.0350173-CDS-C-linearis_contig8:2220912..22215531690881124.0350173-CDS-C-linearis_contig8:2220912..2221553Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2220913..2221553 -
1622930543.9676821-CDS-C-linearis_contig8:2221920..22224781622930543.9676821-CDS-C-linearis_contig8:2221920..2222478Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2221921..2222478 -
1690881124.0454462-CDS-C-linearis_contig8:2221920..22224781690881124.0454462-CDS-C-linearis_contig8:2221920..2222478Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2221921..2222478 -
1622930543.9815288-CDS-C-linearis_contig8:2223036..22230851622930543.9815288-CDS-C-linearis_contig8:2223036..2223085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2223037..2223085 -
1690881124.0591288-CDS-C-linearis_contig8:2223036..22230851690881124.0591288-CDS-C-linearis_contig8:2223036..2223085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2223037..2223085 -
1622930544.0024505-CDS-C-linearis_contig8:2223590..22239221622930544.0024505-CDS-C-linearis_contig8:2223590..2223922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2223591..2223922 -
1690881124.06879-CDS-C-linearis_contig8:2223590..22239221690881124.06879-CDS-C-linearis_contig8:2223590..2223922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2223591..2223922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15653.1

>prot_C-linearis_contig8.15653.1 ID=prot_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=634bp
MVHSGPTVETADCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADAAT
LSKLVTRPADWLRNSFTGKGLSEAFITVPQAALDNRRIVAPRGQGGGGTS
NVSVGLYQRGREKDYEEHWPWELKDIEASFKSIEAGLTLEEAPTTGIVVP
SCDRMLEEIGVKRSSPTSYEAESTTATTNMADYSEPTWTKEGLGGCRMKR
TTTRGGERQSAWAAFVAPVTSMPNLQVKDDAVVSRVIIEDGRAVGVEVVE
SAPRRWGGGGGTRARQLRLAKEKAEIFVCCGAFRSPKLLMLSGVGPRQHL
EEKGVAVVVDMPHVGENLQDHLVLPTVNISKPPMVEADYTEGSYHGATYF
SCALPSPPPPPPEASSCSATVSSTTDSNSAVSKMVGAATSSAPSAVVGVL
CFDGDGLAQDLGPNICMLIARPGFLGAVVRAAVMALCWVADWVTPIHRVL
RGSRGMLMVFTSIKSKGTVRLTSGTDASAPPLIDPAYLSHPEDRQAACEG
WRMVRRAKRETTTGMAVCGAEILPGRIYNYGNDDESFLKFARHSCLPFFH
PVGTCRMGQGMEDSVVSADDLRVHGVSGLRVADASVAPHIPATPTQAMCM
MIGDRAAAIALKNRFAKDQMQARMLETVSSSVD*
back to top

mRNA from alignment at C-linearis_contig8:2219037..2223922-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15653.1 ID=mRNA_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4886bp|location=Sequence derived from alignment at C-linearis_contig8:2219037..2223922- (Chordaria linearis ClinC8C monoicous)
ATGGTGCATTCAGGCCCTACCGTCGAAACAGCCGACTGCGACTTCCTCAT CGTTGGTGCAGGATCAAGTGGGTGCGTGCTAGCGTCCCGGCTGGTTCGGG CAGGCCTCAAGGTCCTGCTCGTTGAGAAAGGGCCGGCGGACGCCGCGACG CTGAGCAAACTCGTGACGCGCCCCGCGGATTGGTTGCGCAATTCATTCAC CGGGAAAGGTCTTTCGGAAGCCTTCATCACAGTTCCCCAGGCAGCCCTGG ACAACCGCCGCATTGTAGCGCCGAGGGGCCAAGGGGGAGGGGGCACAAGC AATGTCAGCGTCGGCTTGTATCAACGAGGAAGGTATGTTTGTGTGTACGC CGTTGACTTGACTCAAGAAGTAGCAGCAGACAACAAAATAGCGGCGGGCG TTGTATGGCTTTGCGAGGGAAGGGTCAGAGTCGTGTGCTTTGTTTCTCTG GGTTGTTTTTACCCCGCCCGACACTGACTGCATCATCCCCTAGATGGGCT TATCCACCTAGGCCACTCGCCGCTAGCACATCTGGCTCTAACACAACCAC CACGGTTACCATTCGTCAGGGTAAATTAGGCACACAGTTTTGTGCCTGGG AGCAGCCCCATTAGCATCCTATTAATCACATCACGTATTTTTTTCCGCGC TTCAGATTGAAGAAAAATACGCAGTCTAGGAGGAGGCTTTCGTACCACGT GTAGGAAGCATGAAGAGGAAGGGACCGGGTTACGCATCACGTGGCATGCT TCGTGATGCAGCACGGCCAGATTTCGTATCACGGCTTCGCCAAAATCGTT GGAATCTTGATCTTTGTTGTTGCGTGTGCTTGCGCAGAGAGAAGGACTAC GAAGAGCATTGGCCGTGGGAGCTGAAAGATATTGAGGTGGGTGCATAAAA TACAAAATACGCATAGTTTGAACCTAAGTGCGTCAACCTTCACTGCAACA GCCCTCGTGGCAATGCGGCACAACTTCGGTACTTCACGGGGTCAAATTTC TGCTCGACTGAGACGACAATCTCATGCTCAGAAGACTGCTTAGGAAGAAA TATCGTCTTAAAGTAAGGCTTTCCAAGGACGTGATGCACACAGCATCGGC ATCCTACCCTTTTCGAGATGATATTGGCTTGAGGTACATACGTAGTTTTC CAGGCGCAGGCTCGCTTCGATGGCTGGTAAGGGAATGTGGAGCGTCGCAG TGACGTTCCCTTCTCTACCTTCGTACTTTTCAGCACCCGCCCGCCGCAAA CCAAATCAGCTGGAGACATTTATGGCGCTATCAGGGCAACCGAGTGTTGT ATCCTACCAGGTACCAGATACAACTCTACCCCGGGGTAATCTAGGGTCAG AAAAGAGCTTTTGCCGCACGTTGTCTCTGCTTATCTCTACTTTGGGCGCT GAAACACACTTCTCCTCTGCATTGCCATCGCGGTTTGCTGGCAGGCAAGC TTCAAGTCCATCGAGGCCGGGCTGACTCTTGAGGAGGCACCAACCACCGG CATCGTTGTGCCGTCGTGCGATCGCATGCTCGAAGAGATTGGAGTGAAGC GCTCCTCCCCTACGTCCTACGAGGCAGAGAGTACCACCGCCACCACTAAC ATGGCCGACTACTCGGAGCCTACTTGGACCAAAGAAGGCCTCGGCGGCTG CCGGATGAAGCGAACCACGACAAGGGGCGGCGAGAGGCAGTCGGCCTGGG CGGCCTTCGTCGCCCCCGTCACATCCATGCCCAACCTCCAAGTCAAGGAC GACGCCGTAGTGTCCCGCGTCATCATCGAGGACGGACGAGCGGTCGGGGT AGAGGTTGTAGAGTCCGCACCGAGGCGGTGGGGGGGGGGCGGAGGAACGC GGGCACGGCAGTTGCGGTTGGCGAAGGAGAAAGCGGAGATCTTCGTGTGC TGCGGGGCGTTCAGGTCTCCGAAGCTTCTCATGCTCTCTGGCGTGGGACC TCGGCAGCACCTGGAGGAAAAGGGGGTGGCGGTTGTGGTGGACATGCCCC ACGTGAGTGCGAGAGGGAGTTTTGGAAAGATTGTTGTACGTGCGCTTGGT TGAAAGATGCTCCTGTCTGAGCTTCCAATTGTTCTTTGCCCGGCCCGCAA GATGCGCGTTGGGAGACTGAGGGACCACTGGTTCTCTTAGTTTTGGTTTT GTTTCTGTGGATTTGTTGTTGGGGGTTGCGCAACACCCTGGGCTTTTTCT GCGGCACCATTCACAACGATTACCCATCATGAACAAGGTAATCTCCGCCA ATGGAATTCCTTTTTTTTGCGCTTTTGTCTTTGCTCTGTCGGCGAAACCT GTAACCCCTGAACATTTTATTTCCTCCCACTCTCTCCCTCGCGCCCGGGC CGGATTCGTTGTTTCGCAGGTAGGTGAAAACCTCCAGGACCACCTGGTTC TGCCCACCGTGAATATCAGCAAGCCACCGATGGTAGAGGCCGACTACACC GAGGGATCGTATCACGGCGCGACCTACTTCTCTTGTGCGTTGCCCTCCCC GCCGCCGCCGCCTCCTGAAGCTTCCTCCTGCTCCGCTACCGTGTCGAGTA CTACCGACAGCAACAGCGCTGTGTCCAAGATGGTGGGTGCGGCAACCAGC TCCGCTCCGTCGGCTGTGGTCGGGGTTCTTTGCTTCGACGGCGACGGCCT TGCGCAAGACCTCGGCCCAAACATCTGCATGCTCATCGCGCGTCCGGGGT TCCTGGGCGCAGTGGTGCGCGCCGCCGTGATGGCGCTGTGCTGGGTCGCC GACTGGGTCACCCCGATACACCGGGTCCTTCGGGGTTCCCGCGGAATGTT GATGGTTTTCACAAGCATTAAGAGTAAGGGCACGGTGCGCCTCACTTCCG GGACGGACGCCTCGGCGCCGCCGCTGATCGACCCGGCGTACTTGTCCCAC CCGGAGGACCGGCAGGCGGCGTGCGAGGGGTGGCGCATGGTTCGGCGCGC GAAGCGCGAGACAACCACCGGCATGGCTGTTTGTGGGGCCGAGATCTTGC CGGGGAGAATGTGAGTGTTGTGTGCTCCCGGGGATATAGTCGGGGGGGGA GGGCGCAGTGCTGTTCTTCTCGAACTTACTGTGAAAGTCGGAAGGTGGAG AGGTTGGACGAGTTTTCATGTGTTGGAGTTGGTTCGTTGAGTTCTTGTTG TCGGCCTTGCGTTTTCGTTATCGTGCCTTGGTAGCTTCCTTTTTATCTGT TTCTATCGCCCAGGCGATATGCAGGTGAAGTGACGTCGCCATCTTGCTTT TGCTTTTGAGTCTTCGTTCGTGCTTGAATAAAGCCTTTGTCTCGAGGGAG GCTACGGTATGTGTTTCGTCTCGCCGCGGCGGTGAATTTGTCGCTTGTGG CTGAGTTGTGTCGCCCGCGAGTAGGGAGAACCGACTACTCGCGACAAGGT GTTCTTCGTTATCAATCAAAGCGAGAGACGGCGAGACAAAACGCAAAGAA GATACCCAACACAACTAATACCCTTTTGCGGTCCTCCACGTGAGACTCGC AGCGGACGGACTCAAATTTTGACGGCAGGCTCTCTGTGCTCGATTCATTT TGGGCGACGTTTTCTGGTGTTTGCGATCCGGTCTCAACCAGATACAATTA CGGTAACGACGACGAGAGCTTCTTGAAGTTCGCCCGACATAGCTGCCTGC CCTTCTTTCACCCTGTCGGCACCTGCCGGATGGGACAAGGGATGGAAGAC TCGGTGGTGTCCGCCGACGACCTCAGGTAAGCTACCGTGGACTGTTTTGA TTTTTCGAGTGGAGGCGAGACAAGGCGAGGCGGCGTGTGTGGGTGGGTAG ACTGGCTGGAATCCGCAGCGAGAGAGAGTCGGGCGGGATAGGGAATGTAA ATCGCGGTTGAGTACGACGGGTACACCGCGCCCGTTGTCCTGGATTGCGT CTACTCTGCGGCTTGATCGGATGCATTGGCCGCTTGTTTCGGCGGCGTGG CGCGCTCGTTTTCGCCGATTTTCTTGTGCACGGTGCCCAGATTTTTCGAG CAGCAGCTACACAAAGGTTTAGTGTTACCGGGTGCGTGGTAATCTAGTTG TTCCGTGAGACTTGCGTTGTCCAGTACAGCGATGTGATCCCCTTTCGAAT GGGATAGGTCTGCTCCGAACAGCGTAGTACATTAAATGTAACGCGGGAGC GCGATGCTCCGTTGTTTGTTCGTACCCGTGTCAACGAGATCGAATATTTG ATTGGTTGTGATTCTATCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCGTCCTCTTCCTCGCCGTATCTGGCATGCTTTTTCTGGGTA AATTAGGGTGCACGGCGTTTCCGGGCTGAGGGTGGCGGATGCCTCGGTCG CGCCACACATACCCGCAACCCCGACGCAGGCGATGTGCATGATGATCGGG GATCGAGCGGCCGCTATCGCTCTCAAGAACAGGTTCGCGAAGGACCAGAT GCAGGTGAGCGAGGTGCGGGCCGGCAGGCACCTAGCACTACCGCAAGCGC ATGAATGATAAAGTGATGGGCAAGTCGGCGTTGGTTCCCGGGCAAGGCAG GACAATGTTTGGAGGGGGCTTCGGCGCATGCAAACTTGGCTGTGGACTCC CTTATCTTCGTTGTCAGTCGAGGGAACACGTGCTACAACAACGATGCCCG GAATATTTTGCCGGCTACATGCAGACAGGATATTTCAGCTAAATGTCGAA ACCCTGTGTCTCGCCGACGTTGCCGGAAACACGCGCCCACACTTGCAGGC GCGCATGCTCGAGACCGTGAGCAGTTCCGTCGACTAGACCAAACCCTTCG CCCTTCTGTCTCGGAGGGCTAAAGACTCGGCGAGGGGGGGAACCGTGCAG CCAGTTGAATGAAAATAGGGCAGGGCTTGTGGTGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:2219037..2223922-

>mRNA_C-linearis_contig8.15653.1 ID=mRNA_C-linearis_contig8.15653.1|Name=mRNA_C-linearis_contig8.15653.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3804bp|location=Sequence derived from alignment at C-linearis_contig8:2219037..2223922- (Chordaria linearis ClinC8C monoicous)
ATGGTGCATTCAGGCCCTACCGTCGAAACAGCCGACTGCGACTTCCTCAT
CGTTGGTGCAGGATCAAGTGGGTGCGTGCTAGCGTCCCGGCTGGTTCGGG
CAGGCCTCAAGGTCCTGCTCGTTGAGAAAGGGCCGGCGGACGCCGCGACG
CTGAGCAAACTCGTGACGCGCCCCGCGGATTGGTTGCGCAATTCATTCAC
CGGGAAAGGTCTTTCGGAAGCCTTCATCACAGTTCCCCAGGCAGCCCTGG
ACAACCGCCGCATTGTAGCGCCGAGGGGCCAAGGGGGAGGGGGCACAAGC
AATGTCAGCGTCGGCTTGTATCAACGAGGAAGATGGTGCATTCAGGCCCT
ACCGTCGAAACAGCCGACTGCGACTTCCTCATCGTTGGTGCAGGATCAAG
TGGGTGCGTGCTAGCGTCCCGGCTGGTTCGGGCAGGCCTCAAGGTCCTGC
TCGTTGAGAAAGGGCCGGCGGACGCCGCGACGCTGAGCAAACTCGTGACG
CGCCCCGCGGATTGGTTGCGCAATTCATTCACCGGGAAAGGTCTTTCGGA
AGCCTTCATCACAGTTCCCCAGGCAGCCCTGGACAACCGCCGCATTGTAG
CGCCGAGGGGCCAAGGGGGAGGGGGCACAAGCAATGTCAGCGTCGGCTTG
TATCAACGAGGAAGAGAGAAGGACTACGAAGAGCATTGGCCGTGGGAGCT
GAAAGATATTGAGAGAGAAGGACTACGAAGAGCATTGGCCGTGGGAGCTG
AAAGATATTGAGGCAAGCTTCAAGTCCATCGAGGCCGGGCTGACTCTTGA
GGAGGCACCAACCACCGGCATCGTTGTGCCGTCGTGCGATCGCATGCTCG
AAGAGATTGGAGTGAAGCGCTCCTCCCCTACGTCCTACGAGGCAGAGAGT
ACCACCGCCACCACTAACATGGCCGACTACTCGGAGCCTACTTGGACCAA
AGAAGGCCTCGGCGGCTGCCGGATGAAGCGAACCACGACAAGGGGCGGCG
AGAGGCAGTCGGCCTGGGCGGCCTTCGTCGCCCCCGTCACATCCATGCCC
AACCTCCAAGTCAAGGACGACGCCGTAGTGTCCCGCGTCATCATCGAGGA
CGGACGAGCGGTCGGGGTAGAGGTTGTAGAGTCCGCACCGAGGCGGTGGG
GGGGGGGCGGAGGAACGCGGGCACGGCAGTTGCGGTTGGCGAAGGAGAAA
GCGGAGATCTTCGTGTGCTGCGGGGCGTTCAGGTCTCCGAAGCTTCTCAT
GCTCTCTGGCGTGGGACCTCGGCAGCACCTGGAGGAAAAGGGGGTGGCGG
TTGTGGTGGACATGCCCCACGCAAGCTTCAAGTCCATCGAGGCCGGGCTG
ACTCTTGAGGAGGCACCAACCACCGGCATCGTTGTGCCGTCGTGCGATCG
CATGCTCGAAGAGATTGGAGTGAAGCGCTCCTCCCCTACGTCCTACGAGG
CAGAGAGTACCACCGCCACCACTAACATGGCCGACTACTCGGAGCCTACT
TGGACCAAAGAAGGCCTCGGCGGCTGCCGGATGAAGCGAACCACGACAAG
GGGCGGCGAGAGGCAGTCGGCCTGGGCGGCCTTCGTCGCCCCCGTCACAT
CCATGCCCAACCTCCAAGTCAAGGACGACGCCGTAGTGTCCCGCGTCATC
ATCGAGGACGGACGAGCGGTCGGGGTAGAGGTTGTAGAGTCCGCACCGAG
GCGGTGGGGGGGGGGCGGAGGAACGCGGGCACGGCAGTTGCGGTTGGCGA
AGGAGAAAGCGGAGATCTTCGTGTGCTGCGGGGCGTTCAGGTCTCCGAAG
CTTCTCATGCTCTCTGGCGTGGGACCTCGGCAGCACCTGGAGGAAAAGGG
GGTGGCGGTTGTGGTGGACATGCCCCACGTAGGTGAAAACCTCCAGGACC
ACCTGGTTCTGCCCACCGTGAATATCAGCAAGCCACCGATGGTAGAGGCC
GACTACACCGAGGGATCGTATCACGGCGCGACCTACTTCTCTTGTGCGTT
GCCCTCCCCGCCGCCGCCGCCTCCTGAAGCTTCCTCCTGCTCCGCTACCG
TGTCGAGTACTACCGACAGCAACAGCGCTGTGTCCAAGATGGTGGGTGCG
GCAACCAGCTCCGCTCCGTCGGCTGTGGTCGGGGTTCTTTGCTTCGACGG
CGACGGCCTTGCGCAAGACCTCGGCCCAAACATCTGCATGCTCATCGCGC
GTCCGGGGTTCCTGGGCGCAGTGGTGCGCGCCGCCGTGATGGCGCTGTGC
TGGGTCGCCGACTGGGTCACCCCGATACACCGGGTCCTTCGGGGTTCCCG
CGGAATGTTGATGGTTTTCACAAGCATTAAGAGTAAGGGCACGGTGCGCC
TCACTTCCGGGACGGACGCCTCGGCGCCGCCGCTGATCGACCCGGCGTAC
TTGTCCCACCCGGAGGACCGGCAGGCGGCGTGCGAGGGGTGGCGCATGGT
TCGGCGCGCGAAGCGCGAGACAACCACCGGCATGGCTGTTTGTGGGGCCG
AGATCTTGCCGGGGAGAATGTAGGTGAAAACCTCCAGGACCACCTGGTTC
TGCCCACCGTGAATATCAGCAAGCCACCGATGGTAGAGGCCGACTACACC
GAGGGATCGTATCACGGCGCGACCTACTTCTCTTGTGCGTTGCCCTCCCC
GCCGCCGCCGCCTCCTGAAGCTTCCTCCTGCTCCGCTACCGTGTCGAGTA
CTACCGACAGCAACAGCGCTGTGTCCAAGATGGTGGGTGCGGCAACCAGC
TCCGCTCCGTCGGCTGTGGTCGGGGTTCTTTGCTTCGACGGCGACGGCCT
TGCGCAAGACCTCGGCCCAAACATCTGCATGCTCATCGCGCGTCCGGGGT
TCCTGGGCGCAGTGGTGCGCGCCGCCGTGATGGCGCTGTGCTGGGTCGCC
GACTGGGTCACCCCGATACACCGGGTCCTTCGGGGTTCCCGCGGAATGTT
GATGGTTTTCACAAGCATTAAGAGTAAGGGCACGGTGCGCCTCACTTCCG
GGACGGACGCCTCGGCGCCGCCGCTGATCGACCCGGCGTACTTGTCCCAC
CCGGAGGACCGGCAGGCGGCGTGCGAGGGGTGGCGCATGGTTCGGCGCGC
GAAGCGCGAGACAACCACCGGCATGGCTGTTTGTGGGGCCGAGATCTTGC
CGGGGAGAATATACAATTACGGTAACGACGACGAGAGCTTCTTGAAGTTC
GCCCGACATAGCTGCCTGCCCTTCTTTCACCCTGTCGGCACCTGCCGGAT
GGGACAAGGGATGGAAGACTCGGTGGTGTCCGCCGACGACCTCAGATACA
ATTACGGTAACGACGACGAGAGCTTCTTGAAGTTCGCCCGACATAGCTGC
CTGCCCTTCTTTCACCCTGTCGGCACCTGCCGGATGGGACAAGGGATGGA
AGACTCGGTGGTGTCCGCCGACGACCTCAGGGTGCACGGCGTTTCCGGGC
TGAGGGTGGCGGATGCCTCGGTCGCGCCACACATACCCGCAACCCCGACG
CAGGCGATGTGCATGATGATCGGGGATCGAGCGGCCGCTATCGCTCTCAA
GAACAGGTTCGCGAAGGACCAGATGCAGGGTGCACGGCGTTTCCGGGCTG
AGGGTGGCGGATGCCTCGGTCGCGCCACACATACCCGCAACCCCGACGCA
GGCGATGTGCATGATGATCGGGGATCGAGCGGCCGCTATCGCTCTCAAGA
ACAGGTTCGCGAAGGACCAGATGCAGGCGCGCATGCTCGAGACCGTGAGC
AGTTCCGTCGACTAGGCGCGCATGCTCGAGACCGTGAGCAGTTCCGTCGA
CTAG
back to top