mRNA_C-linearis_contig8.15651.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15651.1
Unique NamemRNA_C-linearis_contig8.15651.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: A0A835ZKG5_9STRA (7 transmembrane sweet-taste receptor of 3 GCPR-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKG5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.240e-8
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 2 
Query:    8 CQLLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNNASKLSRIS 205
            C L L GC  L+  + L++G  +   CLARPW+ HV LTFT GCL +  +R +++F+   K  RIS
Sbjct:  529 CALFLGGCAALSAVSILHLGPATPAACLARPWLQHVVLTFTLGCLLV--HRAYKLFSTGLKRMRIS 592
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: A0A0D2WRC7_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRC7_CAPO3)

HSP 1 Score: 55.5 bits (132), Expect = 2.910e-7
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:   14 LLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNN 181
            L+L G +L  +   L    P+D +C A PW+ H+G  F  G L++KTYR+ RIFNN
Sbjct: 1269 LILFGALLSYVWIFLAAPTPTDALCAAMPWVRHLGFCFVFGALFLKTYRIDRIFNN 1324
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: A0A1Y1WQF3_9FUNG (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WQF3_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 1.680e-5
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:   14 LLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNN 181
            ++++GCIL+ ++  LY+G P + +C  + W+  +G  F+ G L +K YR++ IFNN
Sbjct:  438 IIVLGCILMQLSLLLYLGNPKERLCYLKLWLFVIGFGFSLGGLVVKAYRIYSIFNN 493
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.710e-5
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:   77 DVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNNASKLSRISI 208
            D VC+ARPW+ HV LTFT  C+ +K +R  R+F+  + L RI I
Sbjct:  940 DAVCMARPWLQHVLLTFTLSCILVKLHRAWRLFSFKNGLKRIKI 983
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: K3X561_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X561_GLOUD)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:   11 QLLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNNASKLSRISI 208
            +L++ G IL+ ++A +Y G P++V+C ARP +   G T   G L++K+ RV+R+F  +S + R+ I
Sbjct:  620 ELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSS-MKRVKI 684
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: K3X562_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X562_GLOUD)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 25/66 (37.88%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:   11 QLLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNNASKLSRISI 208
            +L++ G IL+ ++A +Y G P++V+C ARP +   G T   G L++K+ RV+R+F  +S + R+ I
Sbjct:  677 ELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSS-MKRVKI 741
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BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Match: A0A8K1FMA7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMA7_PYTOL)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:   14 LLLVGCILLNITATLYVGVPSDVVCLARPWMTHVGLTFTSGCLYMKTYRVHRIFNNASKLSRISI 208
            L++VG I++ ++A LY G PS  +C ARP    VG T   G L +K+ RV+R+F   S L R+++
Sbjct:   48 LMIVGGIMICVSALLYAGQPSRFLCAARPVFISVGFTLVFGSLVVKSLRVYRVFMK-SALKRVTV 111
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835ZKG5_9STRA8.240e-843.947 transmembrane sweet-taste receptor of 3 GCPR-dom... [more]
A0A0D2WRC7_CAPO32.910e-744.64G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A1Y1WQF3_9FUNG1.680e-537.50G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A835YYF4_9STRA1.710e-550.00G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
K3X561_GLOUD2.310e-537.88G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
K3X562_GLOUD2.310e-537.88G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A8K1FMA7_PYTOL3.530e-541.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2214244..2214972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.2920158-CDS-C-linearis_contig8:2214243..22143781622930502.2920158-CDS-C-linearis_contig8:2214243..2214378Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2214244..2214378 +
1690881102.667325-CDS-C-linearis_contig8:2214243..22143781690881102.667325-CDS-C-linearis_contig8:2214243..2214378Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2214244..2214378 +
1622930502.3115559-CDS-C-linearis_contig8:2214895..22149701622930502.3115559-CDS-C-linearis_contig8:2214895..2214970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2214896..2214970 +
1690881102.6800685-CDS-C-linearis_contig8:2214895..22149701690881102.6800685-CDS-C-linearis_contig8:2214895..2214970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2214896..2214970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15651.1prot_C-linearis_contig8.15651.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2214244..2214970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15651.1

>prot_C-linearis_contig8.15651.1 ID=prot_C-linearis_contig8.15651.1|Name=mRNA_C-linearis_contig8.15651.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=70bp
VRVPAPPRRLHPAQHHGHPLRGRPLGRGLLGAAVDDARRADLHQRLPVHE
DVSSAPYLQQRLEALENIHH
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mRNA from alignment at C-linearis_contig8:2214244..2214972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15651.1 ID=mRNA_C-linearis_contig8.15651.1|Name=mRNA_C-linearis_contig8.15651.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at C-linearis_contig8:2214244..2214972+ (Chordaria linearis ClinC8C monoicous)
GTTCGTGTGCCAGCTCCTCCTCGTAGGCTGCATCCTGCTCAACATCACGG
CCACCCTCTACGTGGGCGTCCCCTCGGACGTGGTCTGCTTGGCGCGGCCG
TGGATGACGCACGTCGGGCTGACCTTCACCAGCGGGTGCGCTAAACTCGA
TACAATGGCTAGGGTAGTCGTTCGATTAGTGCCTACCTGTAGGTACACCG
ATGTTCTACCCAATTCTGGCTTTTATCAGCACTAGGCACAGTTTGTGTTG
GAAGAATTTCATCCCCCGCCTAGATGCTGCTGCGGAACGGTTTCTCTTGC
ACTACATACAGCACGCGAGCGACACCGGACGGAGTTATCCACAACCACAA
ACCAGGCAATGTTCAATGCTCCCCGCCCCCAGAACCCCATAGATAAAAAA
CATGCTTTTCCCTGTTTCGAAACACAAGGGGTACCACGGTGTTTGGTTCC
ACTACAGCAGTTCAAGCAGTTTTGTGCCCCTCGCGGGCCTCCCTACCACG
AAAATGAGAACCCTCCAGCCCGAACTAGTACATCCATGTCAGCTATTCCC
TGGAACGCGGACACAAAGCTTAAACAGAACGAAGAGAAGCCGACATGATT
TATGACCCCCTTCCTCAAACCGTCTGTCGCCGTTTCTCTTTCGGTTTTTC
AGCTGCCTGTACATGAAGACGTATCGAGTGCACCGTATCTTCAACAACGC
CTCGAAGCTCTCGAGAATATCCATCACCG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2214244..2214972+

>mRNA_C-linearis_contig8.15651.1 ID=mRNA_C-linearis_contig8.15651.1|Name=mRNA_C-linearis_contig8.15651.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at C-linearis_contig8:2214244..2214972+ (Chordaria linearis ClinC8C monoicous)
GTTCGTGTGCCAGCTCCTCCTCGTAGGCTGCATCCTGCTCAACATCACGG
CCACCCTCTACGTGGGCGTCCCCTCGGACGTGGTCTGCTTGGCGCGGCCG
TGGATGACGCACGTCGGGCTGACCTTCACCAGCGGGTTCGTGTGCCAGCT
CCTCCTCGTAGGCTGCATCCTGCTCAACATCACGGCCACCCTCTACGTGG
GCGTCCCCTCGGACGTGGTCTGCTTGGCGCGGCCGTGGATGACGCACGTC
GGGCTGACCTTCACCAGCGGCTGCCTGTACATGAAGACGTATCGAGTGCA
CCGTATCTTCAACAACGCCTCGAAGCTCTCGAGAATATCCATCACCTGCC
TGTACATGAAGACGTATCGAGTGCACCGTATCTTCAACAACGCCTCGAAG
CTCTCGAGAATATCCATCAC
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