mRNA_C-linearis_contig8.15647.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15647.1
Unique NamemRNA_C-linearis_contig8.15647.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2208668..2209776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15647.1prot_C-linearis_contig8.15647.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2208695..2209776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.4773014-UTR-C-linearis_contig8:2208667..22086941622930543.4773014-UTR-C-linearis_contig8:2208667..2208694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2208668..2208694 +
1690881123.8327963-UTR-C-linearis_contig8:2208667..22086941690881123.8327963-UTR-C-linearis_contig8:2208667..2208694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2208668..2208694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.4911845-CDS-C-linearis_contig8:2208694..22087871622930543.4911845-CDS-C-linearis_contig8:2208694..2208787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2208695..2208787 +
1690881123.8425033-CDS-C-linearis_contig8:2208694..22087871690881123.8425033-CDS-C-linearis_contig8:2208694..2208787Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2208695..2208787 +
1622930543.506464-CDS-C-linearis_contig8:2209620..22097761622930543.506464-CDS-C-linearis_contig8:2209620..2209776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2209621..2209776 +
1690881123.8523362-CDS-C-linearis_contig8:2209620..22097761690881123.8523362-CDS-C-linearis_contig8:2209620..2209776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2209621..2209776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15647.1

>prot_C-linearis_contig8.15647.1 ID=prot_C-linearis_contig8.15647.1|Name=mRNA_C-linearis_contig8.15647.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
MVIGSGGDNESCSAEECLVFTVYQPPYDFLEVESTNIANVVTVRFNLANR
SASSGDWGWVLGQVDPSLTVEDANSLSAADANE
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mRNA from alignment at C-linearis_contig8:2208668..2209776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15647.1 ID=mRNA_C-linearis_contig8.15647.1|Name=mRNA_C-linearis_contig8.15647.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at C-linearis_contig8:2208668..2209776+ (Chordaria linearis ClinC8C monoicous)
CCGGGATTTTACAGCGCATGTTTGTTCATGGTGATCGGAAGTGGTGGAGA
CAATGAATCGTGCTCGGCGGAGGAGTGCCTCGTCTTCACGGTGTATCAGC
CTCCGTATGATTTCCTCGAGGTAGGTGGTCAAACTCTCTCCATGCTCACT
TTCACAACGCGTAGTCTCGACGGTAGATCCCACATTATTTGTAGCCTTAG
ACGTTACCGATTGTTTCGCGGGCCAAACTTCCATTTATTTGACGGCAATG
CTTTGCTCCACCGGTGGAGTAATTTTTTATTTACTCCCATCAGGCAGATC
TCCGCCCACACAGCCATTATCAATCTGAAACCAGTTTCATCATGTCCGTA
CGGCCTACAGCTGTCCAGCAAGCTACTTGAAAGGTAAATCAGACCAGCGG
TTGCAGATATATGCTCGAAAAAAGGGGCTCAGCAGTATCGCAGGTTCAGC
AGGGGGGGTGCATGGCATTATTCCCGCCGTATCTCCGGTCATATAGCTCG
TAAAGGCCTAAACTTGAATGAACCGTGTTGGCACGGCTCAAAGCTATCAT
ACAAGCCATCGGGCACCCAAATCGGACCGGTGGTTGCAGATAAACCCTCA
CCTACGGAGCCCCCCCTTTTTCGAGCATATATCTGCAGCCACTTTCCTGA
TTTATTTTCTGGTTAACCTTTCAAGCAGCTTGCCGGATAGCTGTAGGTCG
TACGGACACGATAAAACTGGTTTCAGATCGATCATGACTGTGTGGGCGGA
GATCTGCCTGGTGGAGAAAATAAAGTATTACCCCACCGGTGGAGCAAATA
GCATTGCCAGTAATCCGTTTATTTAAACTCGCGACCAACACAAGATACAA
AATACAGATTGCAGGTGACACAACAATCGTGTCGTTCTGATTTTCGATGT
TTTCACCTGCGCCTGCTTCTTTCTGCTCGCTTTTTTGCTTTTTTTTTCCC
AAGGTCGAAAGTACCAACATTGCCAACGTCGTCACAGTGCGCTTCAACCT
CGCGAATCGATCGGCGTCCTCGGGCGACTGGGGATGGGTCCTTGGACAAG
TGGACCCATCGCTCACGGTTGAGGATGCCAACAGCCTGAGTGCTGCCGAT
GCAAATGAA
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Coding sequence (CDS) from alignment at C-linearis_contig8:2208668..2209776+

>mRNA_C-linearis_contig8.15647.1 ID=mRNA_C-linearis_contig8.15647.1|Name=mRNA_C-linearis_contig8.15647.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig8:2208668..2209776+ (Chordaria linearis ClinC8C monoicous)
ATGGTGATCGGAAGTGGTGGAGACAATGAATCGTGCTCGGCGGAGGAGTG
CCTCGTCTTCACGGTGTATCAGCCTCCGTATGATTTCCTCGAGATGGTGA
TCGGAAGTGGTGGAGACAATGAATCGTGCTCGGCGGAGGAGTGCCTCGTC
TTCACGGTGTATCAGCCTCCGTATGATTTCCTCGAGGTCGAAAGTACCAA
CATTGCCAACGTCGTCACAGTGCGCTTCAACCTCGCGAATCGATCGGCGT
CCTCGGGCGACTGGGGATGGGTCCTTGGACAAGTGGACCCATCGCTCACG
GTTGAGGATGCCAACAGCCTGAGTGCTGCCGATGCAAATGAAGTCGAAAG
TACCAACATTGCCAACGTCGTCACAGTGCGCTTCAACCTCGCGAATCGAT
CGGCGTCCTCGGGCGACTGGGGATGGGTCCTTGGACAAGTGGACCCATCG
CTCACGGTTGAGGATGCCAACAGCCTGAGTGCTGCCGATGCAAATGAA
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