mRNA_C-linearis_contig8.15637.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15637.1
Unique NamemRNA_C-linearis_contig8.15637.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A6H5KPX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX9_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 9.060e-102
Identity = 156/172 (90.70%), Postives = 159/172 (92.44%), Query Frame = 3 
Query:   84 NKKWEWIRTMKFQLVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 599
             K  + I  MKFQLVAAISAVLCAL A APRADPKECEVC +VLEQ+ ESMP ADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTIS PFSTGMPK KVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL
Sbjct:   70 RKNEDGILAMKFQLVAAISAVLCALTAAAPRADPKECEVCVNVLEQISESMPAADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISHPFSTGMPKSKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 241
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: D8LUC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC3_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 6.200e-78
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:  234 MPVADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 599
            MP ADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTIS PFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL
Sbjct:    1 MPAADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 122
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A836CA80_9STRA (Armet protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA80_9STRA)

HSP 1 Score: 205 bits (521), Expect = 9.950e-61
Identity = 102/164 (62.20%), Postives = 124/164 (75.61%), Query Frame = 3 
Query:  111 MKFQLVAAISAVLCALAAGA-PRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 599
            MK   V    A++   A GA P A+PKECEVC SVLE+V   +  AD KNKDKIE AI+ +C Q+L ++DDKMCY  + IKK +SQPFS G+PKLKVCQRLK  NA++C ++YPIKVDK N+DYN LRVK LK ILA+RG  CDGC+EKSDYV RCK TE++EL
Sbjct:    1 MKVVSVVFAGALVGLAAVGAAPAANPKECEVCISVLEKVEGLLNAADTKNKDKIEEAIEKYCSQKLPAKDDKMCYNLVTIKKHVSQPFSLGLPKLKVCQRLKKDNADICNMQYPIKVDKGNVDYNTLRVKALKSILAERGARCDGCIEKSDYVKRCKETENMEL 164
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A7S2Y4H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4H6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.860e-58
Identity = 100/166 (60.24%), Postives = 125/166 (75.30%), Query Frame = 3 
Query:  105 RTMKFQLVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 599
            R     L+ AIS V+  L+  A   DPK CEVC +VLEQ+  +M  AD+KNK KIEAAIDAFCDQ+ L+++D KMCYY  PIK+ +SQPFSTGMPK KVCQRL   N ++C +KYP+KV+K+  DY+KLRVK LK ILA+RGV+C GCLEK DYV RC+ T H++L
Sbjct:    3 RVFSSLLILAISFVIATLSRAAD--DPKACEVCINVLEQIDATMDKADKKNKPKIEAAIDAFCDQKMLNAKDKKMCYYLDPIKRAVSQPFSTGMPKNKVCQRLTKDNPDICAVKYPMKVEKDT-DYSKLRVKALKQILAERGVECTGCLEKPDYVKRCEETAHMDL 165
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A4D9D3E5_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3E5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 5.150e-45
Identity = 87/159 (54.72%), Postives = 118/159 (74.21%), Query Frame = 3 
Query:  123 LVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLE 596
            LVAA++A+L  LA  A  +DPK+CEVC  VLE++   M    +KNK  +E AIDA+C ++ + +++ K+CY+  PIK+ +SQPFSTGMPK KVC RLK  +AE+C IKYP+KVD +  DY KLRVK+LK ILA+RGV+C GCLEK D++ +C+ T HL 
Sbjct:    9 LVAALAALL-GLANLAHASDPKDCEVCIGVLEKIDAGMEAKAKKNKLAVEDAIDAYCSRKDIDNKEKKLCYFLKPIKRDVSQPFSTGMPKAKVCARLKKKSAEICGIKYPVKVDSQT-DYTKLRVKELKAILAERGVECTGCLEKPDFIKKCEETAHLS 165
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: B8BWT8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWT8_THAPS)

HSP 1 Score: 160 bits (405), Expect = 1.490e-43
Identity = 78/158 (49.37%), Postives = 112/158 (70.89%), Query Frame = 3 
Query:  126 VAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQ-RLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHL 593
            ++ +SA L A ++    +DP+ECEVC  V++ V ++MP  D+K+K KIE AI A C +  LS+R+ K+CYY  PIK+ ++QPFS GM   KVC+R+  +N E+C +K+P+K +  E  D  KLRVKQLK IL DRGV+C GC+EK +++AR + TEHL
Sbjct:    4 ISILSAALLAASSVNAASDPRECEVCMKVMQDVRDAMPKEDQKDKPKIEQAIGAHCKKDTLSARERKICYYIDPIKRDVAQPFSLGMTVEKVCKRIDKTNPEICSVKFPVKTENLEKKDLTKLRVKQLKSILLDRGVECKGCVEKEEFIARVQETEHL 161
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A6U6GUQ8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GUQ8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.560e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 3 
Query:  108 TMKFQ--LVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLE 596
            TMKF   LVAA S V  A+ A AP  + K+CEVC  V++ + +SM  AD K K  +E  + A+C +  L  R+ K+CYY  PIK+ ++QPFSTGMP  +VC+R+  SN E+C +K+PIK +K E  D +KLRVKQLK ILA+RGV+C GC+EK +++ + + TEHLE
Sbjct:   46 TMKFSGLLVAAASVV--AMLASAPAVEAKDCEVCIKVMQDIRDSMEKADIKKKPMVEKKMGAYCARDDLGPREKKVCYYIDPIKRDVAQPFSTGMPPDRVCKRINNSNPEICGVKFPIKTEKLEKKDLSKLRVKQLKSILANRGVECKGCIEKEEFIKKVQDTEHLE 210
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A7S0XC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC71_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.790e-43
Identity = 85/174 (48.85%), Postives = 113/174 (64.94%), Query Frame = 3 
Query:  123 LVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCD------------QRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK---ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 599
            ++  I ++ CA A   P  DP++CEVC + LE V + +P   + +K  IE AI   C             +  S +D KMCY F PIKK+IS PF+TGMPK KVCQRL+  N E+CE+KYP+KV+K   E  DYNKL+VKQLK IL++RGV C GC EK ++V +C+ TEHLE+
Sbjct:   14 IILLIVSIECAKA---PTKDPRDCEVCIANLEAVDKLLPADKKSDKAAIEKAIGKRCTLSGFGSEWKPNPELTSPKDVKMCYLFEPIKKSISTPFATGMPKAKVCQRLQKDNPEICEVKYPLKVEKKEGEATDYNKLKVKQLKEILSNRGVTCTGCTEKPEFVKKCQETEHLEM 184
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BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A7R9VPQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VPQ9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.770e-43
Identity = 78/159 (49.06%), Postives = 113/159 (71.07%), Query Frame = 3 
Query:  126 VAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQR-LSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLE 596
            +AA++AV  ++ A     + K+CEVC  V++ + +SM  AD K K K+EAA+  +C +  L  R+ K+CYY  PIK+ ++QPFSTGMP  +VC+R+  SN E+C +K+PIK +K E  D +KLRVKQLK ILADRGV+C GC+EK +++ + + TEHLE
Sbjct:    8 LAAVAAVFASVPAAV---EAKDCEVCIKVIQDIRDSMDKADIKKKPKVEAAMGDYCARSDLGPREKKVCYYIDPIKRDVAQPFSTGMPPDRVCKRINQSNPEICGVKFPIKTEKLEPKDLSKLRVKQLKSILADRGVECKGCIEKEEFIKKVQETEHLE 163
[Close]
BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Match: A0A6U3WLY9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3WLY9_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.530e-43
Identity = 78/163 (47.85%), Postives = 113/163 (69.33%), Query Frame = 3 
Query:  111 MKFQLVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNKDKIEAAIDAFCDQ-RLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHL 593
            MK   + A +AV+ A +  A   DP+ECEVC  V++ V +++P AD+ NK  IEAA+ A C +  LS+R+ K+CYY  PIK+ ++ PFS GMP  ++C+R+  SN+E+C +K+P+K +  E  D  KLRVKQLK IL DRGV+C GC+EK +++A  + TEHL
Sbjct:    1 MKSVSIIAAAAVMLASSVSAASNDPRECEVCMKVMQDVRDAIPKADQTNKPAIEAALGAQCAKDTLSARERKICYYIDPIKRDVAHPFSLGMPVDRLCKRINKSNSEICGVKFPVKTENLEKKDLTKLRVKQLKSILVDRGVECKGCVEKEEFIAMVQNTEHL 163
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPX9_9PHAE9.060e-10290.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUC3_ECTSI6.200e-7898.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA80_9STRA9.950e-6162.20Armet protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2Y4H6_9STRA6.860e-5860.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D3E5_9STRA5.150e-4554.72Bifunctional lysine-specific demethylase and histi... [more]
B8BWT8_THAPS1.490e-4349.37Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U6GUQ8_9STRA1.560e-4350.30Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0XC71_9STRA1.790e-4348.85Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7R9VPQ9_9STRA7.770e-4349.06Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3WLY9_9STRA8.530e-4347.85Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2136971..2140176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog2880.D8LUC3
Preferred nameMANF
KEGG koko:K13190
Hectar predicted targeting categorysignal peptide
GOsGO:0001963,GO:0001976,GO:0001980,GO:0002014,GO:0002576,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003084,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006584,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0017144,GO:0018958,GO:0019725,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0035150,GO:0035296,GO:0042310,GO:0042417,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045777,GO:0046903,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050880,GO:0051179,GO:0051234,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0071542,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090066,GO:0097164,GO:0097746,GO:0097756,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:1901360,GO:1901564,GO:1901615,GO:1905897
EggNOG free text desc.neurotrophic factor
EggNOG OGsKOG4154@1,KOG4154@2759
Ec32 ortholog descriptionArmet protein
Ec32 orthologEc-14_004440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons5
Model size1428
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.5774229-UTR-C-linearis_contig8:2136970..21377961622930541.5774229-UTR-C-linearis_contig8:2136970..2137796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2136971..2137796 -
1690881122.8493686-UTR-C-linearis_contig8:2136970..21377961690881122.8493686-UTR-C-linearis_contig8:2136970..2137796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2136971..2137796 -
1622930541.6457117-UTR-C-linearis_contig8:2139672..21396841622930541.6457117-UTR-C-linearis_contig8:2139672..2139684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2139673..2139684 -
1690881122.9131722-UTR-C-linearis_contig8:2139672..21396841690881122.9131722-UTR-C-linearis_contig8:2139672..2139684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2139673..2139684 -
1622930541.6613343-UTR-C-linearis_contig8:2140078..21401761622930541.6613343-UTR-C-linearis_contig8:2140078..2140176Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2140079..2140176 -
1690881122.9243605-UTR-C-linearis_contig8:2140078..21401761690881122.9243605-UTR-C-linearis_contig8:2140078..2140176Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2140079..2140176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.5895846-CDS-C-linearis_contig8:2137796..21379511622930541.5895846-CDS-C-linearis_contig8:2137796..2137951Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2137797..2137951 -
1690881122.8657846-CDS-C-linearis_contig8:2137796..21379511690881122.8657846-CDS-C-linearis_contig8:2137796..2137951Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2137797..2137951 -
1622930541.602468-CDS-C-linearis_contig8:2138293..21384141622930541.602468-CDS-C-linearis_contig8:2138293..2138414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2138294..2138414 -
1690881122.8763523-CDS-C-linearis_contig8:2138293..21384141690881122.8763523-CDS-C-linearis_contig8:2138293..2138414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2138294..2138414 -
1622930541.6203516-CDS-C-linearis_contig8:2138721..21388491622930541.6203516-CDS-C-linearis_contig8:2138721..2138849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2138722..2138849 -
1690881122.8867743-CDS-C-linearis_contig8:2138721..21388491690881122.8867743-CDS-C-linearis_contig8:2138721..2138849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2138722..2138849 -
1622930541.6329207-CDS-C-linearis_contig8:2139584..21396721622930541.6329207-CDS-C-linearis_contig8:2139584..2139672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2139585..2139672 -
1690881122.897409-CDS-C-linearis_contig8:2139584..21396721690881122.897409-CDS-C-linearis_contig8:2139584..2139672Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2139585..2139672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15637.1prot_C-linearis_contig8.15637.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2137797..2139672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15637.1

>prot_C-linearis_contig8.15637.1 ID=prot_C-linearis_contig8.15637.1|Name=mRNA_C-linearis_contig8.15637.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
MKFQLVAAISAVLCALAAGAPRADPKECEVCASVLEQVHESMPVADRKNK
DKIEAAIDAFCDQRLSSRDDKMCYYFLPIKKTISQPFSTGMPKLKVCQRL
KASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSD
YVARCKATEHLEL*
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mRNA from alignment at C-linearis_contig8:2136971..2140176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15637.1 ID=mRNA_C-linearis_contig8.15637.1|Name=mRNA_C-linearis_contig8.15637.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3206bp|location=Sequence derived from alignment at C-linearis_contig8:2136971..2140176- (Chordaria linearis ClinC8C monoicous)
GCCTCCCAGAACAAAAGCCGGCTTGGACTTACGCAGCCACAAGCCTTTGT
CAGCAGCTTCCACTTCTTAAACCGGGGATAGTCAACAAGAAGTGGGAGGT
GAGGCCGCGGTTGGCGCATTGCAAGTGGGTGTGTGAGCGTTAGCATCCGG
CTGTATCACCAGCACGACGGCCGTACGTGCTGCTCTTGTATCGAGGGAAG
AGGGGAAGAGACCATGCAACAAAGCTGATAACCCGCAGGAAATGGCATAC
CATGTTCCCGTCCCATCCTCTGTGCGTTGATATGTAGTTTGTAAGGCATA
GAGAGGTTTCAAGAGCCTACGAGAGGGAGGGGAACAGGTAAATTGATTCG
TACGGTAGCTTGAGGGTGCGTGTCTCTGCGCCCCAGGTGCCACCCGCTTT
CTTAGCCCTCTCGAATGTGTGACGAGTCTGACATTCTGCGTTTGCGTTTG
CTGCCTCTCCTACAACCCGTTGTCCCTTGTATGTTTTCGCAGTGGATTAG
AACGATGAAGTTCCAATTAGTAGCTGCGATATCTGCGGTGCTGTGCGCGC
TTGCAGCAGGCGCTCCGCGAGCGGATCCCAAAGAGTGTGAAGGTAAGACG
GATTGACCGGAGTTGTGGCATTGGGGACTTGCCCCGTAACGCTCAGCAAT
AGAGAATTACTGCCCTTGAACTGATAACGCTGTCGCCGCATATGTGATGT
TGGTACCTATGTGAAGCGAAGCGGACCAATTACTACGAGTACATTTCTAG
GCGAACGAGCATGTCAAATCATCTGCTGGTCGTATCTTCTTGCATTGTAC
GTATTCAGCAGAAACAGCAGTTTACCGACTGACGTAGAGCACGGTGGGGT
CACCACGCGGTTGTTTGACTCTGACTATGTAGATAGGGGCTGAAATATGC
AACGCGTCGTTTGTCATTTTGGGTGAATTCTTGTTCGTGTTCGTGCGGGT
GAGTACATACGAGTTTGCAGAATGTGTCGAAGTACATACACCCCACGAGC
TTGACAACACACCTCGGTTGGCCGATATAGCGGCATACAGGTACCTACAT
AGGTGTTGGCAGACGCACATCAGGAGCCCCACCGCAACATACGGACAACA
TGTCGCAACGTTTGTTTGGACACGGGCGGGCCGATGCAAAGAAGGCATGT
TTGCACCTTGCCCACGGCGGGTTCGGCCGCCGGCGAACAAAGCAGGACTC
CACGTGTTTCGACCTTAAACCCGCACTTCCCTGACTCGGACTAAGTCTGA
TCCCCGCGTACTGCTGTACCCATCGCTGGGTTTTACTCTGGGTTTGCTCT
GGTGCGTTTTGACGTTGCGGTTTGCAGTTTGCGCAAGTGTACTGGAACAA
GTCCACGAGTCGATGCCGGTGGCGGATCGCAAAAACAAAGACAAGATCGA
GGCGGCCATCGACGCCTTCTGCGACCAACGTCTTTCCTCACGGGACGACA
AGATGGTGAGCCTGAAGCAGTAGCAGCGGTGATGGCAGCGCAGAAATCTG
AATGAAGAGACTGAAAACAAGCTACGCACGGCTTTTGCTGGCCCAGTTGC
CGTAGACTACACGTACATGTTTTGTTTTTCATCGCGTTTGAGCATCAGAA
TGCGGTCTCCATGGGCCGTACCCGAACTAGTGACTTATCAGGTTGTGGGC
TGCTATTTACCATTGCAATGTTTTGATCACCGAACCCACATAGCCAGTCT
CCTTTGTTTGCTCTGACTTTCGTCGTCGAATGTGCCTCGCCTCGCCTCGC
CTCGCCTCCCAGTGCTACTACTTCTTGCCGATCAAGAAGACGATTTCGCA
GCCGTTCTCCACGGGCATGCCCAAGTTGAAGGTCTGCCAACGCCTGAAGG
CGTCCAACGCGGAGGTCTGCGAGATCAAATACCGTGAGTGAACGCGTTAC
CGGGGTGGGACGACGATTCGTGTGATGGGTGATGGGTGATTCGTGCCGTG
GGTGTATTTGAAACGCTTTCACATTTTCTTGGTGTTTCATCAGCGATGGC
CATTTGGCTCGCTACTCCGGTGGGCGCCGTAGTTCATTCTGACGGGAGCG
GGGTGGGGGGGCGGGGGCGGATGGAACTACTACATAGGGCCTTTCAACAT
TGCAATATGCGCCACCCTTCCCCCCCTTCACTTCGTCTCTGCCTCCTGAA
TCCTTGCTTAACTCTCACGCTTCGCACGCTTGCTTGATTTTCGCGTGGTG
TTCCTATGTTCTCTCTGTCCACCAGCCATCAAGGTAGACAAGGAGAACAT
GGACTACAACAAGCTTCGCGTGAAGCAGCTCAAGGGGATTCTGGCAGACC
GGGGGGTGGACTGTGATGGGTGCCTGGAGAAGTCGGATTACGTCGCGCGC
TGCAAGGCCACCGAGCACCTCGAGCTTTAGTTTGGTTTTCTGTCTTGGTT
CGGTATGTTGTTTTTCGGTGCCGTAGGTGACGGTGGTAGTGGTTTTGTGT
CGCGGCGCGGTCGGTAGCCTGATGTTAGTCGGCGAATGGTGCGTGTTTCT
CCTTCGTTGGTGCTCACAAGTGTAGCGGCTAGAAGGGCTGGGTGGACTGG
ATGTAACGAGTAAATGAAACTCGAGTAGAGTGAAAGACAAGAGCTTTGAT
TTTTTGCCCGGCTTAGAAGCATGAACGTGCTCGTCTCGCCGGTTGCTAGC
TGCCTATGGCTCTCTCTCCCTCCATCCTGCCGTTCTCCCTTCAGCCTCAC
ACGGCAGTGACCCCGGCGTTGGGTTGGTAACATGTCCGTCTTCGCGGTCC
AAGCATGTGTGACTTTATCGTTACGTTGTTGAAAAGCGAAAAGCTCTTTC
GGCCTTTGAGGGTATCCCATACACCACCCAACTGGAAGGGCTCGTGCCCC
GTCTTGTTTGGTATTTCCTGTTTATTTCCCTCCTGTGGCCACGTGACGGA
TCATTTGGTGTGACTTGTCTCTTCGCGCCTGTTTCCGAAATACATGTCGC
CAAAACGCCGATTTTACCTTCCCGAGTGTAAGAGCTCAACCGAGGGTTTT
CAGTCAGTTGAGCCGAGAAAGACGCAGTTTTCCGGCTGTTTATTTTGTTC
GTGTGGGGAAGAAGCATACACTCTAAATGCCGAAGAGAACGGGGATGATG
CTACGGCAGTAGTGGAATCTCGTAAACTCGAGTCTTGCGTTTCATCCGAA
GCTAACTCCGTTGGCAGCAAAAAATGTGATTGGAAGTGACATGTGTTGAG
GCCCCG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2136971..2140176-

>mRNA_C-linearis_contig8.15637.1 ID=mRNA_C-linearis_contig8.15637.1|Name=mRNA_C-linearis_contig8.15637.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at C-linearis_contig8:2136971..2140176- (Chordaria linearis ClinC8C monoicous)
ATGAAGTTCCAATTAGTAGCTGCGATATCTGCGGTGCTGTGCGCGCTTGC
AGCAGGCGCTCCGCGAGCGGATCCCAAAGAGTGTGAAGATGAAGTTCCAA
TTAGTAGCTGCGATATCTGCGGTGCTGTGCGCGCTTGCAGCAGGCGCTCC
GCGAGCGGATCCCAAAGAGTGTGAAGTTTGCGCAAGTGTACTGGAACAAG
TCCACGAGTCGATGCCGGTGGCGGATCGCAAAAACAAAGACAAGATCGAG
GCGGCCATCGACGCCTTCTGCGACCAACGTCTTTCCTCACGGGACGACAA
GATGTTTGCGCAAGTGTACTGGAACAAGTCCACGAGTCGATGCCGGTGGC
GGATCGCAAAAACAAAGACAAGATCGAGGCGGCCATCGACGCCTTCTGCG
ACCAACGTCTTTCCTCACGGGACGACAAGATGTGCTACTACTTCTTGCCG
ATCAAGAAGACGATTTCGCAGCCGTTCTCCACGGGCATGCCCAAGTTGAA
GGTCTGCCAACGCCTGAAGGCGTCCAACGCGGAGGTCTGCGAGATCAAAT
ACCTGCTACTACTTCTTGCCGATCAAGAAGACGATTTCGCAGCCGTTCTC
CACGGGCATGCCCAAGTTGAAGGTCTGCCAACGCCTGAAGGCGTCCAACG
CGGAGGTCTGCGAGATCAAATACCCCATCAAGGTAGACAAGGAGAACATG
GACTACAACAAGCTTCGCGTGAAGCAGCTCAAGGGGATTCTGGCAGACCG
GGGGGTGGACTGTGATGGGTGCCTGGAGAAGTCGGATTACGTCGCGCGCT
GCAAGGCCACCGAGCACCTCGAGCTTTAGCCATCAAGGTAGACAAGGAGA
ACATGGACTACAACAAGCTTCGCGTGAAGCAGCTCAAGGGGATTCTGGCA
GACCGGGGGGTGGACTGTGATGGGTGCCTGGAGAAGTCGGATTACGTCGC
GCGCTGCAAGGCCACCGAGCACCTCGAGCTTTAG
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