mRNA_C-linearis_contig8.15630.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15630.1
Unique NamemRNA_C-linearis_contig8.15630.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2070082..2071108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size419
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.2221725-CDS-C-linearis_contig8:2070082..20701371622930502.2221725-CDS-C-linearis_contig8:2070082..2070137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2070083..2070137 -
1690881102.637775-CDS-C-linearis_contig8:2070082..20701371690881102.637775-CDS-C-linearis_contig8:2070082..2070137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2070083..2070137 -
1622930502.2460406-CDS-C-linearis_contig8:2070746..20711081622930502.2460406-CDS-C-linearis_contig8:2070746..2071108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2070747..2071108 -
1690881102.652722-CDS-C-linearis_contig8:2070746..20711081690881102.652722-CDS-C-linearis_contig8:2070746..2071108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2070747..2071108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15630.1prot_C-linearis_contig8.15630.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2070083..2071108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15630.1

>prot_C-linearis_contig8.15630.1 ID=prot_C-linearis_contig8.15630.1|Name=mRNA_C-linearis_contig8.15630.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=139bp
GSLGSPRGRQDSRSGGSPSSRGGRGPRWRGSPASPRGGRGDREGRSGGRD
FSSGPRGRFGGNWDPPMDQSHQERGQGQPWYGPQQQRELWPQQQSWPRGE
GHGQGQGGNVFSDEWGNYHTSARLQRQGVSDVHKHPEED
back to top

mRNA from alignment at C-linearis_contig8:2070082..2071108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15630.1 ID=mRNA_C-linearis_contig8.15630.1|Name=mRNA_C-linearis_contig8.15630.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1027bp|location=Sequence derived from alignment at C-linearis_contig8:2070082..2071108- (Chordaria linearis ClinC8C monoicous)
GGTTCTCTCGGTTCTCCTCGGGGCAGGCAGGACTCTCGTTCTGGGGGTTC
TCCGTCATCTCGGGGTGGTAGGGGACCCCGTTGGAGGGGTTCTCCTGCTT
CTCCTCGGGGTGGACGGGGTGACAGGGAAGGTCGGTCAGGTGGCCGCGAC
TTCTCGAGCGGACCTCGGGGCAGGTTTGGAGGGAACTGGGATCCTCCGAT
GGATCAGTCTCACCAGGAGAGGGGGCAAGGTCAGCCTTGGTATGGGCCGC
AGCAACAGAGAGAGCTGTGGCCGCAACAGCAGTCTTGGCCGCGTGGAGAA
GGGCATGGGCAGGGGCAAGGTGGTAACGTTTTCTCGGACGAGTGGGGGAA
CTACCACACCAGGTATGAGGGTGACGGGCAGAGAGATGAAAAAGCCAGTA
ACGGGTTGGGGTTGGGTGAACACGAAAACAATGTGTTCCATCACCGTCTC
ATCCAGGCAAACGAGGAGGAGCGCATGGCTCAGGCAAAAGAACTAGAGGC
CAAGCAAAAAGAAGTAGAACGGGAGAATGAGGAACTCAAGCAGAGGGTGG
CAGCCCTGATGGCAGAAAAAAAGGCCAAGGAAAGTGTAGAGACCAAACCT
GAAGAACCATCACAAACTTATGCTTCAGTGGTGTCTGGGCCGCAGGACTC
TGGGGGTGGCGTGAGAGTGACAGATAACGGGGTGAAACCTGAGGAGAAAA
ATACCTCAAGGAAACCGGAAGTGGTGGGCAGTGTCAAGAGGGCATATGCC
AACACGAAGGTAACGAACTTCATCAAGTTGCCGAAAATTCCGCTGAAGAA
CAATTCCGTGTCAGAGTTAGTTGCTTTCACCAAGAACCTCAAGGGTACCG
TAGAGGACATTCATTCGTGATGCCGCTGGGGACCCGGATGAATGGTGGAC
CCCCGGTTGGGACAAACCGCTTGAAAAGCACGTGCTCGCTGCTGTTGACC
GTCAATTGCTCTCAAACCAAGCGCTAGACTTCAACGCCAAGGTGTCTCAG
ACGTTCACAAACACCCGGAAGAAGATG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:2070082..2071108-

>mRNA_C-linearis_contig8.15630.1 ID=mRNA_C-linearis_contig8.15630.1|Name=mRNA_C-linearis_contig8.15630.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at C-linearis_contig8:2070082..2071108- (Chordaria linearis ClinC8C monoicous)
GGTTCTCTCGGTTCTCCTCGGGGCAGGCAGGACTCTCGTTCTGGGGGTTC
TCCGTCATCTCGGGGTGGTAGGGGACCCCGTTGGAGGGGTTCTCCTGCTT
CTCCTCGGGGTGGACGGGGTGACAGGGAAGGTCGGTCAGGTGGCCGCGAC
TTCTCGAGCGGACCTCGGGGCAGGTTTGGAGGGAACTGGGATCCTCCGAT
GGATCAGTCTCACCAGGAGAGGGGGCAAGGTCAGCCTTGGTATGGGCCGC
AGCAACAGAGAGAGCTGTGGCCGCAACAGCAGTCTTGGCCGCGTGGAGAA
GGGCATGGGCAGGGGCAAGGTGGTAACGTTTTCTCGGACGAGTGGGGGAA
CTACCACACCAGGGTTCTCTCGGTTCTCCTCGGGGCAGGCAGGACTCTCG
TTCTGGGGGTTCTCCGTCATCTCGGGGTGGTAGGGGACCCCGTTGGAGGG
GTTCTCCTGCTTCTCCTCGGGGTGGACGGGGTGACAGGGAAGGTCGGTCA
GGTGGCCGCGACTTCTCGAGCGGACCTCGGGGCAGGTTTGGAGGGAACTG
GGATCCTCCGATGGATCAGTCTCACCAGGAGAGGGGGCAAGGTCAGCCTT
GGTATGGGCCGCAGCAACAGAGAGAGCTGTGGCCGCAACAGCAGTCTTGG
CCGCGTGGAGAAGGGCATGGGCAGGGGCAAGGTGGTAACGTTTTCTCGGA
CGAGTGGGGGAACTACCACACCAGCGCTAGACTTCAACGCCAAGGTGTCT
CAGACGTTCACAAACACCCGGAAGAAGATCGCTAGACTTCAACGCCAAGG
TGTCTCAGACGTTCACAAACACCCGGAAGAAGAT
back to top