mRNA_C-linearis_contig8.15628.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15628.1
Unique NamemRNA_C-linearis_contig8.15628.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6H5KEX0_9PHAE (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 3.040e-106
Identity = 162/211 (76.78%), Postives = 186/211 (88.15%), Query Frame = 2
Query:  230 MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNTEGINTFSTSLTL 862
            MAA+   R +GKILPSSTVFFACDVQERFRDLI NMPAVISTA+F++DVSQEL+VPCIVTEQYPKALL TVPELN+G   DQI+VP+FEKKLFSMCT+ V   ++ LPD+ ++ VLFGIEAHVCVTQTCLDLL+LGYEVH+VCDGVSSQKPHDRAVALQRMQQ GA+LT+AEQV FQLL +AE+  F+++SNLVK RN EGINTFST  TL
Sbjct:    1 MAAATASRRLGKILPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGNGPDQINVPIFEKKLFSMCTKEVEEELKKLPDR-KDAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 210          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: D7FJG0_ECTSI (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 6.480e-106
Identity = 177/265 (66.79%), Postives = 207/265 (78.11%), Query Frame = 2
Query:   80 AVSARGFLLNKGVSTSRRRDTSSAGQVDLQPISPQLSLCSPLAAVPSG----LEMAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNTEGINTFSTSLTL 862
            AVSARGF L+   S +    T        +  SP L L  P +A  S     +EMA +   R +GKI PSSTVFFACDVQERFRDLI NMPAVISTA+F++DVSQEL+VPCIVTEQYPKALL TVPELN+G   DQI+VP+FEKKLFSMCT+ V   ++ LPD+ ++ VLFGIEAHVCVTQTCLDLL+LGY+VH+VCDGVSSQKPHDRAVALQRMQQ GA+LT+AEQV FQLL +AE+  F+++SNLVK RN EGINTFST  TL
Sbjct:   10 AVSARGFFLSVTPS-AHYSSTIWKRHGGREKNSPLLLLQLPPSARASSDIPVVEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDR-KDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 272          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: W7U6T6_9STRA (Isochorismatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.460e-61
Identity = 108/197 (54.82%), Postives = 141/197 (71.57%), Query Frame = 2
Query:  230 MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQID--VPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
            M AS   R +GK+ P +T F  CDVQERFRD+I++ P VI TA+F+  V QEL++P + +EQYPKA   TVPEL        +D  +P FEKK+FSM T+ +   ++  P++ + +VLFGIEAHVCV QT LDLLE GY VHI+ DGVSSQK HDRAVAL+RM++ GA+LTTAE + F L+ +A  P FK+IS L+K
Sbjct:   20 MTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAA----VDYCIPTFEKKMFSMLTDELKAQMQCEPER-KTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIK 211          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U3TC81_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.850e-60
Identity = 102/197 (51.78%), Postives = 137/197 (69.54%), Query Frame = 2
Query:  239 SAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPR-NIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNT 826
            SA RR VGK+ P S+V   CDVQERFR LI NM  VI+T +F+  V++EL++PC+ T+QY K    T+P+     +     +PVFEKKLFSMCTE    H+ SL    + + ++ GIEAHVC+ QTCLDLLE G++VHI+ DGVSSQ+  DR +AL+RM+Q GA++TT +  AF LL  A++ NFK++S LVK   T
Sbjct:    3 SAARRAVGKLCPKSSVLLVCDVQERFRPLIHNMETVINTTKFMTAVAKELQIPCVATQQYTKVFGPTIPDAIADPNDIGTSIPVFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQKIDRDIALKRMEQSGAWITTCQSAAFMLLGGADNANFKAVSKLVKDHMT 199          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S2I082_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I082_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.690e-58
Identity = 114/207 (55.07%), Postives = 142/207 (68.60%), Query Frame = 2
Query:  224 LEMAASAP-----RRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPEL-----NIGTDRDQIDVPVFEKKLFSMCTEAVLTH-VESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
            ++MAA+A      +RLVGK+ PS+T    CD+QERFR LI N   VI TA+FL  VS+EL VP + T+QY K    TV +      +IGTD     VPVFEKKLFSM T  V +H  E+L +K  + +L GIEAHVCV QT LDLLE+G++VHIV DGVSSQ+P DR +ALQRM   GA+LTTA+  AF L+ SA+ PNFK +S LV
Sbjct:   72 IKMAATAAASLTTKRLVGKLHPSTTALLVCDIQERFRPLIHNGETVIRTAKFLTSVSKELSVPILATQQYTKVFGPTVTDCFANPEDIGTDA----VPVFEKKLFSMMTPQVKSHFTETLQNKTTSFILVGIEAHVCVQQTALDLLEMGHDVHIVADGVSSQQPFDREIALQRMTGAGAFLTTAQSAAFMLMQSADHPNFKKVSKLV 274          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6V1K7V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7V1_HETAK)

HSP 1 Score: 202 bits (513), Expect = 2.940e-58
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 2
Query:  248 RRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQ-------IDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
            R  VGK+ P+ST+F  CDVQERFR LI+    V++T+R+L+ +S+EL +P I T+QY +A   T PE+ +     +        D+PVFEKKLFSM T+ V T ++      R++VLFG E HVCV QTCLDLLE G EVH+V DG SSQ+P DR VALQRM Q GA++TTAE + F L+ SA  PNFK +S L K
Sbjct:    3 RLSVGKLQPASTLFLLCDVQERFRSLIYQAETVVNTSRYLVQISRELGIPVIATQQYTRAFGPTCPEIPLTAPEPEESGAPKATDIPVFEKKLFSMITDEVGTALDQCGPSLRSVVLFGQETHVCVQQTCLDLLERGLEVHVVADGCSSQRPTDREVALQRMAQSGAFVTTAESLVFMLMRSAAHPNFKKVSALTK 198          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S0FTH2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTH2_9STRA)

HSP 1 Score: 196 bits (498), Expect = 9.720e-56
Identity = 106/197 (53.81%), Postives = 133/197 (67.51%), Query Frame = 2
Query:  233 AASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDV---PVFEKKLFSMCTEAVLTHVESLPDKPR-NIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
            A S   R VGK+ P+++    CD+QERF  LI+    V+STA+FL  V + L +P + T+QY KA   TVP    G   D  D+   P+FEKKLFSM T  VL H+     K R + +LFGIEAHVCV QTCLDLLE+G++VH++ DGVSSQ+P DR VALQRM   GAYLTTA+  AF L+ SAE PNFK++S LV
Sbjct:   43 ALSVAARHVGKLSPATSCLLLCDIQERFSPLIYKTDTVVSTAQFLTSVGKALDIPIVATQQYTKAFGPTVP----GCFADAADLESTPIFEKKLFSMMTPEVLDHLAQPNMKDRTSFLLFGIEAHVCVQQTCLDLLEMGHDVHVIVDGVSSQQPIDREVALQRMMGAGAYLTTAQSAAFMLVKSAEHPNFKAVSKLV 235          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U3TTI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TTI9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.330e-55
Identity = 106/195 (54.36%), Postives = 131/195 (67.18%), Query Frame = 2
Query:  233 AASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPEL--NIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
            A++A +RL+GK+ PSST    CD+QERFR LI N   VI TARFL  VSQEL VP + T+QY K    T      N G D     +PVFEKKLFSM T  +  H+    D  ++ ++ GIEAHVCV QT LDLLELG++VH+V DGVSSQ+P DR +AL RM   GA+LTTA+  AF L+ SAE PNF+ +S LV
Sbjct:    7 ASTATKRLLGKLHPSSTALLVCDIQERFRPLIHNGETVIRTARFLTSVSQELDVPILTTQQYTKVFGPTCASCFANPG-DLGSPSLPVFEKKLFSMLTPEMKNHIN---DNIKSFIIVGIEAHVCVQQTVLDLLELGHDVHVVADGVSSQQPFDREIALGRMTSAGAFLTTAQSAAFMLMRSAEHPNFRKVSKLV 197          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U1N7F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N7F4_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.710e-54
Identity = 100/204 (49.02%), Postives = 134/204 (65.69%), Query Frame = 2
Query:  257 VGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNI------------GTDRDQI---DVP---VFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
            VG++ P ST+F  CD+QERFR+ I+    V +TA++L++V+ EL V  + T QY KAL   VPE+N+            GTD       D P   V++KKLFSMCT+ V   +E+  +   ++VLFGIE HVC+ QTCLDLL  G EVH+V DG SSQ+P+DR VALQRM + GA++TTAE   F+LL +A+ P  K+ISNL K
Sbjct:    5 VGRLRPQSTIFLLCDIQERFREKIWKFGTVANTAKYLVEVAGELNVKVVATTQYAKALGAIVPEINLPVSTEVPAQDEEGTDTKPXXXXDTPAAVVYDKKLFSMCTDQVNAELEAAGEGLTSVVLFGIETHVCIQQTCLDLLSRGLEVHVVADGCSSQRPYDRGVALQRMARAGAFVTTAESAVFELLGTAQHPKLKAISNLTK 208          
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S2W3H3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3H3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.330e-54
Identity = 103/195 (52.82%), Postives = 130/195 (66.67%), Query Frame = 2
Query:  239 SAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRN 823
            SAP R +G+I  SSTVFF CDVQERFR+ I  MP VI T++FL++ S+ L++PCIVTEQYPK LL TV E+++        +PVFEK  F+M    V   +  +       VLFGIE HVCV QT LDLL  G+ VH+V DG+SS KP +R VALQR+Q  GA LTT+E V F+++ S     FK+IS LVK  N
Sbjct:   21 SAPVRNLGRISRSSTVFFLCDVQERFREHIHMMPHVIQTSKFLVNASRVLEIPCIVTEQYPKGLLHTVSEIDVK------GLPVFEKTDFTMLVPQVEKCIADMGTPKDTAVLFGIEGHVCVQQTALDLLAKGWNVHLVADGISSSKPLNRTVALQRLQDAGALLTTSEAVVFEIMRSTSCKEFKTISKLVKENN 209          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX0_9PHAE3.040e-10676.78Isochorismatase domain-containing protein n=1 Tax=... [more]
D7FJG0_ECTSI6.480e-10666.79Isochorismatase domain-containing protein n=1 Tax=... [more]
W7U6T6_9STRA2.460e-6154.82Isochorismatase n=1 Tax=Nannochloropsis gaditana T... [more]
A0A6U3TC81_9STRA6.850e-6051.78Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2I082_9STRA2.690e-5855.07Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V1K7V1_HETAK2.940e-5852.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0FTH2_9STRA9.720e-5653.81Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6U3TTI9_9STRA1.330e-5554.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U1N7F4_9STRA1.710e-5449.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W3H3_9STRA2.330e-5452.82Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2014818..2018895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.3e-84
Seed eggNOG ortholog2880.D7FJG0
Preferred nameMAR1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.isochorismatase domain-containing protein
EggNOG OGsCOG1335@1,KOG4044@2759
Ec32 ortholog descriptionIsochorismatase-like
Ec32 orthologEc-14_006200.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1541
Cds size636
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.1984782-UTR-C-linearis_contig8:2014817..20150461622930540.1984782-UTR-C-linearis_contig8:2014817..2015046Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2014818..2015046 +
1690881122.1780598-UTR-C-linearis_contig8:2014817..20150461690881122.1780598-UTR-C-linearis_contig8:2014817..2015046Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2014818..2015046 +
1622930540.3881586-UTR-C-linearis_contig8:2018219..20188951622930540.3881586-UTR-C-linearis_contig8:2018219..2018895Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2018220..2018895 +
1690881122.2692904-UTR-C-linearis_contig8:2018219..20188951690881122.2692904-UTR-C-linearis_contig8:2018219..2018895Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2018220..2018895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.2347572-CDS-C-linearis_contig8:2015046..20151771622930540.2347572-CDS-C-linearis_contig8:2015046..2015177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2015047..2015177 +
1690881122.1908522-CDS-C-linearis_contig8:2015046..20151771690881122.1908522-CDS-C-linearis_contig8:2015046..2015177Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2015047..2015177 +
1622930540.263733-CDS-C-linearis_contig8:2015516..20155801622930540.263733-CDS-C-linearis_contig8:2015516..2015580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2015517..2015580 +
1690881122.2018814-CDS-C-linearis_contig8:2015516..20155801690881122.2018814-CDS-C-linearis_contig8:2015516..2015580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2015517..2015580 +
1622930540.279108-CDS-C-linearis_contig8:2016006..20160631622930540.279108-CDS-C-linearis_contig8:2016006..2016063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2016007..2016063 +
1690881122.2120025-CDS-C-linearis_contig8:2016006..20160631690881122.2120025-CDS-C-linearis_contig8:2016006..2016063Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2016007..2016063 +
1622930540.2967417-CDS-C-linearis_contig8:2016647..20167761622930540.2967417-CDS-C-linearis_contig8:2016647..2016776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2016648..2016776 +
1690881122.223529-CDS-C-linearis_contig8:2016647..20167761690881122.223529-CDS-C-linearis_contig8:2016647..2016776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2016648..2016776 +
1622930540.328864-CDS-C-linearis_contig8:2017221..20172891622930540.328864-CDS-C-linearis_contig8:2017221..2017289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2017222..2017289 +
1690881122.2334728-CDS-C-linearis_contig8:2017221..20172891690881122.2334728-CDS-C-linearis_contig8:2017221..2017289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2017222..2017289 +
1622930540.3483443-CDS-C-linearis_contig8:2017586..20176941622930540.3483443-CDS-C-linearis_contig8:2017586..2017694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2017587..2017694 +
1690881122.2429779-CDS-C-linearis_contig8:2017586..20176941690881122.2429779-CDS-C-linearis_contig8:2017586..2017694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2017587..2017694 +
1622930540.365599-CDS-C-linearis_contig8:2018140..20182191622930540.365599-CDS-C-linearis_contig8:2018140..2018219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2018141..2018219 +
1690881122.2547448-CDS-C-linearis_contig8:2018140..20182191690881122.2547448-CDS-C-linearis_contig8:2018140..2018219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2018141..2018219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15628.1prot_C-linearis_contig8.15628.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2015047..2018219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15628.1

>prot_C-linearis_contig8.15628.1 ID=prot_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=212bp
MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVS
QELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAV
LTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQK
PHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNTE
GINTFSTSLTL*
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mRNA from alignment at C-linearis_contig8:2014818..2018895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15628.1 ID=mRNA_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4078bp|location=Sequence derived from alignment at C-linearis_contig8:2014818..2018895+ (Chordaria linearis ClinC8C monoicous)
GTGATACGTACGAAGTGGAGACACAGAGTGGGCGTGTGGGTGTGTTGAAT GCGGTTGGCCCTATTGCTTTTAGCGGTAAGCGGTAAGCGCACGCGGGTTC TTGCTCAACAAAGGTGTATCTACATCCCGCAGGCGAGATACATCATCAGC TGGACAAGTAGACCTGCAGCCTATCTCTCCGCAGTTGTCACTCTGCTCAC CTCTTGCGGCTGTTCCCTCGGGCCTAGAGATGGCTGCTTCGGCACCGCGA CGCCTTGTTGGAAAGATCTTGCCCTCCAGCACGGTTTTCTTCGCGTGTGA TGTGCAAGAGCGATTCCGCGACCTCATCTTCAATATGCCTGCTGTCATCT CCACCGCAAGGTATGCTACAACTCCCGTATCTCCACCGCAAGGTATGCTA CAACATACCTACATCGCAGCTGTAGAGGGTCGGTGCAATGTTGCGTATGT GCATCATGTTCACTAACAAACTCTGGGCGCACGAGAGAGAGGCACGCAGG TCACGTTTTAAAGGCATTCATCATAACCTGCCGGCAGTTTTTTTGCTTGC TTTTCGGACGGGGATGCACGTGCAGGCCATCTTTCGCCCTGAACACGTTG ATACAAGACATGCACGTCCTCTGCCTTCTCTGATCCTCCCGGCTGATCCA CCGCCCAACTACGTCTGTACATGTTCCCATGTACGGCTCCACTCCACAGG TTCCTCATCGACGTGTCCCAAGAGCTGAAAGTGCCATGTATTGTAACAGA GCAATACCCGAAGGTGCGTGATCTTTCTCTTTACCAGAAAACATAGAATG CACCTCGCGGGATCCTGTTGAATGATCCTTCGAAGTTGATGCTATGTGCT CCCCTCTGCGTGTGCCCCCGGTACCTCGTATATTCTTCGAGGTGCAAGCC AAAAATTCTGGGTACAAATTGCAGCACACACATCAACTGCTGTTGTACTG CCCGCGGTCCGAGGTGCTGTGCTGCGCCTGAGAGCCGTACTTCTAAAACT CGAATGGGCCAAAGACGTGCTGCCGCCGACCGAATCATGCATCTCGCGAC CAGTATGATTGGACCTGGATGCGCATAGCGGCAGCCATGAAGTGTAGTAG CACGCAAAGAGACAACCAGTAGCGTTCGTGCAAGCCTCTCGCTGTGCGAC CTCGCCAAGTGTTGCTCGTTCATGCTCTTTCTTCGGCAGGCGCTGCTGAA AACAGTTCCGGAGCTCAACATTGGGACAGACCGCGACCAAATCGACGTGA GTACAACATACAGGTTGGCATTGTTGGGACATCTTCCGTGTCTTTTTAGG GGTTTGGATGCTCCGTAACGAGTGCCCATTCCCGTGGGCGTCCCTGCGAA CAAGTACATTCAAATCGATTTTTTTGAATGTATGTACGTTCCAGATTCAA CGAGTCAGATCGATGAGAGCTAAGCCACCGCCGTTGTCGGCGGAATGAAA AATCATATGAAACATTACTGCGACAGCCGCTTTTTCTGAATCCTCGCTCG CTATAAAAAACTGGTCTCTGCACAAGCAATATATCCTTATTCCCGTACTG GCCCAACTGATACGTACATATTTCGAAGTGTATATTTTTGTCATCTCAGT CTATCTTGCCAGTATTCTACCAAATAAAGCCGAACATGAAAAAATCATGA GAACCCTGTGGGTGAGTCCACACTCCACCACACTGCTATCTGCCTTTTGA TCCGTGCACTTTCGTCGACTCTCCCCTTGCCTCCACGACGTCGCACCAGA ATGCCCGCACAGTTTTTCGCCTCTGCCCCTTCATCCGCACCCCCCCTGCG TACTATGCGTGTATCGTGTACCGGGATTAGGTGCCGGTTTTCGAGAAGAA GCTGTTTTCAATGTGCACCGAGGCCGTGTTGACACATGTTGAAAGCCTCC CGGACAAACCTAGGAACATCGTTCTCTTTGGCATCGAGGCCCACGTGTGT GTCACCCAGGTGAACGCATGCCTGTGAGCACGTGCGTACTACGGTATGCC ATTTCGCTGGGTATTTCCTGGTCGAGTATGGCTTACGGTTGAGGCCTGCC GTGTTTTGAGATGTGGAGAGACATTTAGCAAGTAAGGAGTTGTTGCAATG TTTCAAATACCGCGTTTGTCACGCAAGCTATTTGGCGGTGCACTCGATTC TCATCGCCAGGACACGTGCTCAGCTCCCCACCTCGTGTTTTGCTCCTGGT ATTTCGAGACGAAATGACCAGCCCGAACGTGTCCTGTTTTCATGTCGAAT GGTCCGGTGTGGCTCGCGCGGTTTGGGAGGTGTATTTTTGGTAAGTTACT ACGTAGCTCTTTCGAATGACATCTTCCCGCTACTGCTGTAATGCCGCACG TAGCCATGCAGCACTTGTGATGTTGTTTTTTCATTCGTTGAACGCCACTC GCAGACATGCCTTGATTTGTTGGAGCTCGGCTACGAAGTCCACATTGTCT GCGACGGCGTGTCGAGCCAAAAGTGAGTCCCAACACCAAGATAGCGCTGT GTTTAGGTTCACTTCTGTGCGGAGCGAATGCCACGAGTTCGGCCGGATTC AGTACTCTGGTGCCACTCAGTGTTTATTTGCTGCCCTTACCCACCCACTG CTGCCCTTGCCCACCCACTTGGACGAAACCGCGAGGTGTTTAGGCCTTCG CTACCTCACAGCAGCATTACTTTGTTGGCACTCTTGAACGGCGACTAGCC CATTCAGTCGGTGGCTGATGGTGTTTTCCTGACACCGAGTGCGCCGCTGC CTGTGCCGAATTTTTTCAGACCGCACGACCGGGCGGTGGCCCTGCAAAGG ATGCAGCAAGTGGGGGCATATCTGACCACCGCGGAGCAAGTGGCCTTCCA GCTCCTCGTGTCGGCGGAGGACCCCAAGTGAGTCGTCATCATGTCGAGAG AGAGGTACATCTTTCCCAAACCCTGCCCGGGAGTGCGCGTGCACTCTTTT GGCTTGCGTGGACAGCTTTCTTCGCTTCGTTCGCGCCAGAGGTTCGAGTC ACGCGCTTGGTTGTGTTTGCCATGAACTATCTGTTGTTTCTCTGCACGGG TTGAAACCGACAGCAGTTTCCCCCTCGCGCGTGTCGGGTGTGTTTGTTCG GTGATCCTCGCAACACAAGCACAAACAACATGCACCACCATCCATGTATG TAGGCCAGCCACAATGCCTCACTTTATGGAACCACGTCGGCGCACGGCAG TTCGAGGTGTCGTCGCTTGGCACCAGCTTCGCCCGGTTCACCCCCATTCC ATCCCGTCCCTGCCTTTGTCTTGCTTTTCTGCATTGCTCATACCGCACCT CTTTCGTCCTTCGTCTACCAAAGCTTCAAGTCGATATCAAACCTGGTCAA GGGGCGCAACACGGAGGGGATCAATACATTCTCCACGTCGTTAACCCTGT AGTAACCTGGTCTCTCTCGACAGGAAGAAGACGAACACGCACGACCCTTC CTTGTAGACGCACAAGTATCAAGTGTAGACGGGATTCTGTCTGGCTCGAT GTCCATCGCAACCCATTTTCTGGGAGCATCGGACGTTGATATGGGTGATG GAAGGCTGTAATTTAGCTGTCAGAGGGTGGGATCCTTGGTGGGTTTAGGT AGTAGCTGTCATTGTTCGCCGATTTATTTTCGTGATTGAGAGGGAAGAGC AATGTTTCAATTGTTTCGCCGATTTATTTTCGTTGTTGAGAGGGAAGAGC GATGGGGATCCATTGCAATTAACGTGCTAGCTTTGCAGTATTGCTTGGGC CATGCACGATTTCAGGCAATGCCCAGGGCATTGGTAATACTTCCACAGAG AGAAAAAAAACTGTACGACGCGGTCGTGCTTGCTGCCCGCAGGTCAGGAC CTCCTCGCGCATTTTCGCTGTGCAAAGCGCGCGCTGTCCCCGGGTGTCGT CTTAGGTTTTGTTTTACCCTCACGTACTTGTAGGGACATTTTCGCGTCGC AAGATCGCTAGAAAAGGTGCGCTGATTAATTGTAGATACAACACCGCCAT TGAACCAATCAATCGACCATTCGCCGAGGGGTATTTCTTGCCGAGGCCAG TTAATGAAAGTACAGCAGGCAACACACG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2014818..2018895+

>mRNA_C-linearis_contig8.15628.1 ID=mRNA_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at C-linearis_contig8:2014818..2018895+ (Chordaria linearis ClinC8C monoicous)
ATGGCTGCTTCGGCACCGCGACGCCTTGTTGGAAAGATCTTGCCCTCCAG
CACGGTTTTCTTCGCGTGTGATGTGCAAGAGCGATTCCGCGACCTCATCT
TCAATATGCCTGCTGTCATCTCCACCGCAAGATGGCTGCTTCGGCACCGC
GACGCCTTGTTGGAAAGATCTTGCCCTCCAGCACGGTTTTCTTCGCGTGT
GATGTGCAAGAGCGATTCCGCGACCTCATCTTCAATATGCCTGCTGTCAT
CTCCACCGCAAGGTTCCTCATCGACGTGTCCCAAGAGCTGAAAGTGCCAT
GTATTGTAACAGAGCAATACCCGAAGGTTCCTCATCGACGTGTCCCAAGA
GCTGAAAGTGCCATGTATTGTAACAGAGCAATACCCGAAGGCGCTGCTGA
AAACAGTTCCGGAGCTCAACATTGGGACAGACCGCGACCAAATCGACGCG
CTGCTGAAAACAGTTCCGGAGCTCAACATTGGGACAGACCGCGACCAAAT
CGACGTGCCGGTTTTCGAGAAGAAGCTGTTTTCAATGTGCACCGAGGCCG
TGTTGACACATGTTGAAAGCCTCCCGGACAAACCTAGGAACATCGTTCTC
TTTGGCATCGAGGCCCACGTGTGTGTCACCCAGGTGCCGGTTTTCGAGAA
GAAGCTGTTTTCAATGTGCACCGAGGCCGTGTTGACACATGTTGAAAGCC
TCCCGGACAAACCTAGGAACATCGTTCTCTTTGGCATCGAGGCCCACGTG
TGTGTCACCCAGACATGCCTTGATTTGTTGGAGCTCGGCTACGAAGTCCA
CATTGTCTGCGACGGCGTGTCGAGCCAAAAACATGCCTTGATTTGTTGGA
GCTCGGCTACGAAGTCCACATTGTCTGCGACGGCGTGTCGAGCCAAAAAC
CGCACGACCGGGCGGTGGCCCTGCAAAGGATGCAGCAAGTGGGGGCATAT
CTGACCACCGCGGAGCAAGTGGCCTTCCAGCTCCTCGTGTCGGCGGAGGA
CCCCAAACCGCACGACCGGGCGGTGGCCCTGCAAAGGATGCAGCAAGTGG
GGGCATATCTGACCACCGCGGAGCAAGTGGCCTTCCAGCTCCTCGTGTCG
GCGGAGGACCCCAACTTCAAGTCGATATCAAACCTGGTCAAGGGGCGCAA
CACGGAGGGGATCAATACATTCTCCACGTCGTTAACCCTGTAGCTTCAAG
TCGATATCAAACCTGGTCAAGGGGCGCAACACGGAGGGGATCAATACATT
CTCCACGTCGTTAACCCTGTAG
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