mRNA_C-linearis_contig8.15628.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6H5KEX0_9PHAE (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE) HSP 1 Score: 325 bits (832), Expect = 3.040e-106 Identity = 162/211 (76.78%), Postives = 186/211 (88.15%), Query Frame = 2
Query: 230 MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNTEGINTFSTSLTL 862
MAA+ R +GKILPSSTVFFACDVQERFRDLI NMPAVISTA+F++DVSQEL+VPCIVTEQYPKALL TVPELN+G DQI+VP+FEKKLFSMCT+ V ++ LPD+ ++ VLFGIEAHVCVTQTCLDLL+LGYEVH+VCDGVSSQKPHDRAVALQRMQQ GA+LT+AEQV FQLL +AE+ F+++SNLVK RN EGINTFST TL
Sbjct: 1 MAAATASRRLGKILPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGNGPDQINVPIFEKKLFSMCTKEVEEELKKLPDR-KDAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 210
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: D7FJG0_ECTSI (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI) HSP 1 Score: 326 bits (836), Expect = 6.480e-106 Identity = 177/265 (66.79%), Postives = 207/265 (78.11%), Query Frame = 2
Query: 80 AVSARGFLLNKGVSTSRRRDTSSAGQVDLQPISPQLSLCSPLAAVPSG----LEMAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNTEGINTFSTSLTL 862
AVSARGF L+ S + T + SP L L P +A S +EMA + R +GKI PSSTVFFACDVQERFRDLI NMPAVISTA+F++DVSQEL+VPCIVTEQYPKALL TVPELN+G DQI+VP+FEKKLFSMCT+ V ++ LPD+ ++ VLFGIEAHVCVTQTCLDLL+LGY+VH+VCDGVSSQKPHDRAVALQRMQQ GA+LT+AEQV FQLL +AE+ F+++SNLVK RN EGINTFST TL
Sbjct: 10 AVSARGFFLSVTPS-AHYSSTIWKRHGGREKNSPLLLLQLPPSARASSDIPVVEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDR-KDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 272
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: W7U6T6_9STRA (Isochorismatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T6_9STRA) HSP 1 Score: 210 bits (534), Expect = 2.460e-61 Identity = 108/197 (54.82%), Postives = 141/197 (71.57%), Query Frame = 2
Query: 230 MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQID--VPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
M AS R +GK+ P +T F CDVQERFRD+I++ P VI TA+F+ V QEL++P + +EQYPKA TVPEL +D +P FEKK+FSM T+ + ++ P++ + +VLFGIEAHVCV QT LDLLE GY VHI+ DGVSSQK HDRAVAL+RM++ GA+LTTAE + F L+ +A P FK+IS L+K
Sbjct: 20 MTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAA----VDYCIPTFEKKMFSMLTDELKAQMQCEPER-KTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIK 211
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U3TC81_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA) HSP 1 Score: 205 bits (522), Expect = 6.850e-60 Identity = 102/197 (51.78%), Postives = 137/197 (69.54%), Query Frame = 2
Query: 239 SAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPR-NIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRNT 826
SA RR VGK+ P S+V CDVQERFR LI NM VI+T +F+ V++EL++PC+ T+QY K T+P+ + +PVFEKKLFSMCTE H+ SL + + ++ GIEAHVC+ QTCLDLLE G++VHI+ DGVSSQ+ DR +AL+RM+Q GA++TT + AF LL A++ NFK++S LVK T
Sbjct: 3 SAARRAVGKLCPKSSVLLVCDVQERFRPLIHNMETVINTTKFMTAVAKELQIPCVATQQYTKVFGPTIPDAIADPNDIGTSIPVFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQKIDRDIALKRMEQSGAWITTCQSAAFMLLGGADNANFKAVSKLVKDHMT 199
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S2I082_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I082_9STRA) HSP 1 Score: 204 bits (519), Expect = 2.690e-58 Identity = 114/207 (55.07%), Postives = 142/207 (68.60%), Query Frame = 2
Query: 224 LEMAASAP-----RRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPEL-----NIGTDRDQIDVPVFEKKLFSMCTEAVLTH-VESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
++MAA+A +RLVGK+ PS+T CD+QERFR LI N VI TA+FL VS+EL VP + T+QY K TV + +IGTD VPVFEKKLFSM T V +H E+L +K + +L GIEAHVCV QT LDLLE+G++VHIV DGVSSQ+P DR +ALQRM GA+LTTA+ AF L+ SA+ PNFK +S LV
Sbjct: 72 IKMAATAAASLTTKRLVGKLHPSTTALLVCDIQERFRPLIHNGETVIRTAKFLTSVSKELSVPILATQQYTKVFGPTVTDCFANPEDIGTDA----VPVFEKKLFSMMTPQVKSHFTETLQNKTTSFILVGIEAHVCVQQTALDLLEMGHDVHIVADGVSSQQPFDREIALQRMTGAGAFLTTAQSAAFMLMQSADHPNFKKVSKLV 274
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6V1K7V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7V1_HETAK) HSP 1 Score: 202 bits (513), Expect = 2.940e-58 Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 2
Query: 248 RRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQ-------IDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
R VGK+ P+ST+F CDVQERFR LI+ V++T+R+L+ +S+EL +P I T+QY +A T PE+ + + D+PVFEKKLFSM T+ V T ++ R++VLFG E HVCV QTCLDLLE G EVH+V DG SSQ+P DR VALQRM Q GA++TTAE + F L+ SA PNFK +S L K
Sbjct: 3 RLSVGKLQPASTLFLLCDVQERFRSLIYQAETVVNTSRYLVQISRELGIPVIATQQYTRAFGPTCPEIPLTAPEPEESGAPKATDIPVFEKKLFSMITDEVGTALDQCGPSLRSVVLFGQETHVCVQQTCLDLLERGLEVHVVADGCSSQRPTDREVALQRMAQSGAFVTTAESLVFMLMRSAAHPNFKKVSALTK 198
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S0FTH2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTH2_9STRA) HSP 1 Score: 196 bits (498), Expect = 9.720e-56 Identity = 106/197 (53.81%), Postives = 133/197 (67.51%), Query Frame = 2
Query: 233 AASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDV---PVFEKKLFSMCTEAVLTHVESLPDKPR-NIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
A S R VGK+ P+++ CD+QERF LI+ V+STA+FL V + L +P + T+QY KA TVP G D D+ P+FEKKLFSM T VL H+ K R + +LFGIEAHVCV QTCLDLLE+G++VH++ DGVSSQ+P DR VALQRM GAYLTTA+ AF L+ SAE PNFK++S LV
Sbjct: 43 ALSVAARHVGKLSPATSCLLLCDIQERFSPLIYKTDTVVSTAQFLTSVGKALDIPIVATQQYTKAFGPTVP----GCFADAADLESTPIFEKKLFSMMTPEVLDHLAQPNMKDRTSFLLFGIEAHVCVQQTCLDLLEMGHDVHVIVDGVSSQQPIDREVALQRMMGAGAYLTTAQSAAFMLVKSAEHPNFKAVSKLV 235
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U3TTI9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TTI9_9STRA) HSP 1 Score: 195 bits (495), Expect = 1.330e-55 Identity = 106/195 (54.36%), Postives = 131/195 (67.18%), Query Frame = 2
Query: 233 AASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPEL--NIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLV 811
A++A +RL+GK+ PSST CD+QERFR LI N VI TARFL VSQEL VP + T+QY K T N G D +PVFEKKLFSM T + H+ D ++ ++ GIEAHVCV QT LDLLELG++VH+V DGVSSQ+P DR +AL RM GA+LTTA+ AF L+ SAE PNF+ +S LV
Sbjct: 7 ASTATKRLLGKLHPSSTALLVCDIQERFRPLIHNGETVIRTARFLTSVSQELDVPILTTQQYTKVFGPTCASCFANPG-DLGSPSLPVFEKKLFSMLTPEMKNHIN---DNIKSFIIVGIEAHVCVQQTVLDLLELGHDVHVVADGVSSQQPFDREIALGRMTSAGAFLTTAQSAAFMLMRSAEHPNFRKVSKLV 197
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A6U1N7F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N7F4_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.710e-54 Identity = 100/204 (49.02%), Postives = 134/204 (65.69%), Query Frame = 2
Query: 257 VGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNI------------GTDRDQI---DVP---VFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVK 814
VG++ P ST+F CD+QERFR+ I+ V +TA++L++V+ EL V + T QY KAL VPE+N+ GTD D P V++KKLFSMCT+ V +E+ + ++VLFGIE HVC+ QTCLDLL G EVH+V DG SSQ+P+DR VALQRM + GA++TTAE F+LL +A+ P K+ISNL K
Sbjct: 5 VGRLRPQSTIFLLCDIQERFREKIWKFGTVANTAKYLVEVAGELNVKVVATTQYAKALGAIVPEINLPVSTEVPAQDEEGTDTKPXXXXDTPAAVVYDKKLFSMCTDQVNAELEAAGEGLTSVVLFGIETHVCIQQTCLDLLSRGLEVHVVADGCSSQRPYDRGVALQRMARAGAFVTTAESAVFELLGTAQHPKLKAISNLTK 208
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Match: A0A7S2W3H3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3H3_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.330e-54 Identity = 103/195 (52.82%), Postives = 130/195 (66.67%), Query Frame = 2
Query: 239 SAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSQELKVPCIVTEQYPKALLKTVPELNIGTDRDQIDVPVFEKKLFSMCTEAVLTHVESLPDKPRNIVLFGIEAHVCVTQTCLDLLELGYEVHIVCDGVSSQKPHDRAVALQRMQQVGAYLTTAEQVAFQLLVSAEDPNFKSISNLVKGRN 823
SAP R +G+I SSTVFF CDVQERFR+ I MP VI T++FL++ S+ L++PCIVTEQYPK LL TV E+++ +PVFEK F+M V + + VLFGIE HVCV QT LDLL G+ VH+V DG+SS KP +R VALQR+Q GA LTT+E V F+++ S FK+IS LVK N
Sbjct: 21 SAPVRNLGRISRSSTVFFLCDVQERFREHIHMMPHVIQTSKFLVNASRVLEIPCIVTEQYPKGLLHTVSEIDVK------GLPVFEKTDFTMLVPQVEKCIADMGTPKDTAVLFGIEGHVCVQQTALDLLAKGWNVHLVADGISSSKPLNRTVALQRLQDAGALLTTSEAVVFEIMRSTSCKEFKTISKLVKENN 209 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15628.1 >prot_C-linearis_contig8.15628.1 ID=prot_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=212bp MAASAPRRLVGKILPSSTVFFACDVQERFRDLIFNMPAVISTARFLIDVSback to top mRNA from alignment at C-linearis_contig8:2014818..2018895+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15628.1 ID=mRNA_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4078bp|location=Sequence derived from alignment at C-linearis_contig8:2014818..2018895+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2014818..2018895+ >mRNA_C-linearis_contig8.15628.1 ID=mRNA_C-linearis_contig8.15628.1|Name=mRNA_C-linearis_contig8.15628.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at C-linearis_contig8:2014818..2018895+ (Chordaria linearis ClinC8C monoicous)back to top |