mRNA_C-linearis_contig8.15607.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15607.1
Unique NamemRNA_C-linearis_contig8.15607.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: D8LUA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA5_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 1.220e-174
Identity = 241/276 (87.32%), Postives = 253/276 (91.67%), Query Frame = 1
Query:    1 LSDRSLGGDCLPGMANSKSSPLLKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPFGW 828
            L   SLGG+ LP    SKSS +LKMRRTLMDSYNETVRSAPKIGFGTAGRP L DGGAEAPGPGAYQLKSTMFVNPSSMIRSPPS+TMRGREKFGSPDLKAIDRTCQ+EPGPGHYK+AIVNPQE+NAPKYTFPKD GA +RENVVR P     N+HPGVGKQVLSTKRSH GVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQ+DSR+ NKSGAKFSKA RMGK GSLED+APGPGNYRLPPGICG+GAASPYPSAPAATLSGREKFGSPFGW
Sbjct:   13 LVSNSLGGEYLPAATKSKSSDILKMRRTLMDSYNETVRSAPKIGFGTAGRPPLQDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSFTMRGREKFGSPDLKAIDRTCQLEPGPGHYKLAIVNPQEENAPKYTFPKDAGAMIRENVVRAPGPGRYNLHPGVGKQVLSTKRSHNGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQVDSRRCNKSGAKFSKAVRMGKPGSLEDVAPGPGNYRLPPGICGQGAASPYPSAPAATLSGREKFGSPFGW 288          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A835YVV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.240e-76
Identity = 135/272 (49.63%), Postives = 171/272 (62.87%), Query Frame = 1
Query:   67 LKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMA-IVNPQEDNAPKYTFPKDTGAAVRENVVR--GPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKA---PRMGKSG------------SLEDLA--PGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            +KM RT++DSYN TV  AP++GFGTA RP+L DGG + PGPGAY +KSTMF NP S  RSPP +++RGREKFGSPDLKA DR  QMEPGP  YK+  I   ++   P Y+FP+ + A       R   P      +   VGKQVLSTKRSH+G  FGTG RP L+  ST D+GPG+Y IPG+ G +Q+DSRK     ++F+K    P++ K G            + +D A  PG G Y +P  +  R   S + S P A +SGREKFGSPF
Sbjct:    1 MKMGRTVIDSYNATVPMAPRVGFGTADRPALLDGGDDVPGPGAYAIKSTMFKNPRSCFRSPPCFSIRGREKFGSPDLKACDRATQMEPGPAAYKIPHIAGSEQRQPPAYSFPRSSWAKSDAVTARDISPGPGTYALPAAVGKQVLSTKRSHSGPAFGTGGRPPLISVSTDDIGPGDYEIPGNLGTKQVDSRKTTHQASRFAKPGGPPKVKKGGHGAHPQTPAESHAEDDFAHVPGAGAYNIPSTLV-RNPCSMFRSPPVARMSGREKFGSPF 271          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A8J2SYT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYT1_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.530e-62
Identity = 118/258 (45.74%), Postives = 163/258 (63.18%), Query Frame = 1
Query:   67 LKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLL-VQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSG-SLED---LAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            L +  +++DS+N T +++P   FG+A RP L+D     PG GAY +K+T+  N P S I S P +++R REKFG P L+A+D     EPGPG Y    +NP +DN PKY+FPK  G  +++     P      +   VG+QVLSTK ++ G+GFG G RP LL VQ+  DVGPGEY +  S   +Q+DSRK      KFS++ R   S  +++D     PGPG Y+LP G+CG G++ P+ +AP A+LSGREKFGSPF
Sbjct:    5 LGLDHSIIDSFNATKKTSPSYQFGSAIRPRLSDA-EPTPGAGAYSIKTTILGNVPDSRIVSTPQFSLRSREKFGDPMLRALDAGTASEPGPGWYTPKQINPNDDNPPKYSFPK--GHFIKDKARFSPGPGAYAIPSSVGRQVLSTKSNNNGMGFGQGERPPLLRVQN--DVGPGEYGVGISACRKQVDSRKKTSGFVKFSRSARDKTSSMTMQDELQARPGPGTYQLPSGLCGSGSSYPFRAAPRASLSGREKFGSPF 257          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: F0YJJ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ1_AURAN)

HSP 1 Score: 171 bits (434), Expect = 1.440e-47
Identity = 97/219 (44.29%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  124 KIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSL----EDLAPGPGNYRLPPGICGRGAASP 765
            ++ FG+A RP L++     PG GAY +K+T+  N P S I S P +++R REKFG+P L+A+D     +PGPG Y    VNP++DNAPKY+FPK  G  +++     P      +   VGKQVLSTK ++ G+GFG G RP LL     DVGPGEY +  S  ++Q+DSRK      KFS+  R   + +     E+  PGPG Y+LPPG+CG G++ P
Sbjct:   92 RVSFGSAIRPRLSEA-EPTPGAGAYSIKTTILGNVPDSKIHSAPQFSLRSREKFGNPMLRALDTETARQPGPGWYTPKQVNPKDDNAPKYSFPK--GHFIKDKARLSPGPGAYVIPSSVGKQVLSTKSNNNGMGFGQGERPPLLRVHN-DVGPGEYGVGISACKKQVDSRKKTSGFVKFSRCARDKATSTSAKDEEEALPGPGTYQLPPGLCGGGSSYP 306          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: F0WEQ1_9STRA (Uncharacterized protein AlNc14C76G5101 n=2 Tax=Albugo TaxID=65356 RepID=F0WEQ1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.210e-29
Identity = 83/239 (34.73%), Postives = 125/239 (52.30%), Query Frame = 1
Query:  115 SAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAID-RTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRM--GKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            +AP   FG++ RP  ++  A++PGPG+YQ+ ST+     S ++  PS ++ GR+KFGS    AID +     PGPG Y   +VN +E NAPK++  K   ++   N  +GP          +G   LST++S+    F  G R  L   +T DVGPG+Y +  ++  +Q  S     +   F    R    KS +L++   G G Y       G+ + S YPS+P  ++SGR KFGS F
Sbjct:   44 TAPYTVFGSSPRPKPSND-AKSPGPGSYQIPSTLGKAVLSTVQQAPSCSLSGRDKFGS----AIDVKNAASSPGPGDYTSKVVNLREQNAPKFSLGKKWNSSADSNK-KGPGPGAYETANCIGPTFLSTQKSNPASAFPRGERTSLTQNNTPDVGPGQYGVVLTSVGKQTISTLSTPASFSFGTQERSKPSKSKALDNA--GQGRYYSARSSVGKQSESIYPSSPGISMSGRTKFGSHF 274          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: H3H517_PHYRM (Uncharacterized protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=H3H517_PHYRM)

HSP 1 Score: 117 bits (292), Expect = 1.160e-27
Identity = 97/260 (37.31%), Postives = 127/260 (48.85%), Query Frame = 1
Query:   58 SPLLKMRRTLMDSYNETVRS----APKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            SP+ +    +  S  E V S    AP   FG+  RP    G A++PGPGAYQ+ S++     S +   PS ++ GREKFGS  DLK+  +     PGPG Y  AIVNP+E  AP Y+  K       +      XXX     P +G+ VLST++S+    F    R  L   STADVGPG+YS+      RQ  S   + +   F    R     S  D  PGP  Y     + G    S Y +AP  ++SGR KFGS F
Sbjct:   21 SPIHQAFTDIKSSCGEQVDSRKVTAPVTVFGSGTRPRTTSG-AKSPGPGAYQIPSSIGKPVLSTMVQAPSCSISGREKFGSTADLKSSAKF----PGPGDYTTAIVNPRERAAPSYSLGKKWSPMTGQKXXXXXXXXETT--PTIGRTVLSTQKSNPMSSFPKVERKPLRNASTADVGPGQYSVVVEAVGRQAVSTLTSAAAYSFGTESRSKTGRSTADGVPGPNMYDHKSSV-GWQVESTYRTAPKCSMSGRTKFGSHF 272          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: D0NDE2_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NDE2_PHYIT)

HSP 1 Score: 116 bits (290), Expect = 2.080e-27
Identity = 96/261 (36.78%), Postives = 126/261 (48.28%), Query Frame = 1
Query:   55 SSPLLKMRRTLMDSYNETVRS----APKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            SSP  +    +  S  E V S    AP   FG+  RP  ++G +++PGPGAYQ+ S++     S +   PS ++ GREKFGS  DLK    T    PGPG Y   IVNP+E  AP Y+  K       +   +  XXX     P +G+ VLST++S+    F    R  L   STADVGPG+Y +      RQ  S  H+ +   F    R   S S  D       Y  P    G    S Y +AP  ++SGR KFGS F
Sbjct:   17 SSPTHQAFTDIKSSVGEQVDSRKTTAPYTVFGSGTRPRTHNG-SKSPGPGAYQIPSSIGKPVLSTMAMAPSCSISGREKFGSTADLK----TSAKFPGPGDYNTHIVNPRERAAPSYSLGKKWSPMAGDK--KXXXXXAYESSPTIGRTVLSTQKSNPVSSFPKVERKPLNASSTADVGPGQYGVVVEAVGRQTVSTVHSAAAFSFGTEARSRTSRSAADRIGS--KYYDPRSSVGTQVESTYRTAPKCSMSGRTKFGSHF 268          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A8K1CPW0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPW0_PYTOL)

HSP 1 Score: 114 bits (285), Expect = 1.270e-26
Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 1
Query:  115 SAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            +AP   FG++ RP  + G +++PGPGAYQ+ S++     S + + P+ ++ GREKFGS  D+K    T    PGPG Y   IVNP+E +APKY+  K         + + P          +G+ VLST++ +    F    R  L   STADVGPG+Y +  +   +Q  S   + +   F    R  K        PGP +Y+ P    G+   S Y +AP  ++SGR KFGS F
Sbjct:   47 TAPTTVFGSSTRPQTSSG-SKSPGPGAYQIPSSIGKPILSTMNAAPACSISGREKFGSTSDMK----TAANSPGPGDYTSTIVNPRERSAPKYSLGKKWTQL--SGMKKFPGPGEYEAPTTIGRTVLSTQKQNPMPAFPRVERKPLAATSTADVGPGQYGVVVAAVGKQPLSTLTSAAAFSFGNEQRS-KLAKTGVEVPGPASYQ-PKSSVGKQVESTYRTAPKISMSGRTKFGSHF 274          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: K3WN56_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WN56_GLOUD)

HSP 1 Score: 107 bits (267), Expect = 5.600e-24
Identity = 86/277 (31.05%), Postives = 130/277 (46.93%), Query Frame = 1
Query:   22 GDCLPGMANSKSSP---------LLKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
            G   PG + +  SP          + ++ +  +  +    +AP   FG++ RP    G  ++PGPGAYQ+ S++     S +   P+ ++ GREKFGS  D K    T    PGPG Y   IVNP+E  AP+Y+  K  G      + + P          +G+  LST++S+    F    R  L   +T DVGPG+Y++  +   +Q  S   + +   F    R   S    D  PGP +Y     + G+   S Y +AP  ++SGR KFGS F
Sbjct:   11 GSSSPGKSKAPGSPGHFGGAYTGYVDIKSSCGEQVDSRKATAPVTVFGSSTRPHTTSGN-KSPGPGAYQIPSSIGKPVLSTMMQAPACSISGREKFGSTGDAKLSGST----PGPGDYTSEIVNPRERAAPRYSLGKKWGNL--SEMKKSPGPGSYESSTTLGRTFLSTQKSNPMPAFTKVERKPLTSGNT-DVGPGQYAVVVAAVGKQPISTLSSAASYSFGTELRTKVSRGTVDAVPGPNSYPSKSSV-GKQVESTYRTAPKCSMSGRTKFGSHF 278          
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: W7T5U8_9STRA (Flagellar associated protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5U8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.980e-22
Identity = 75/210 (35.71%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   85 LMDSYNETVRSAPKIGFGTAGRPSL--NDGGAEAPGPGAYQLKSTMFVNPS-SMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMA-------IVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGN-RPDLLVQSTADV-----GPGEYSIPGSTGERQIDSRKHNKSGAKFSKA 666
            ++ SY     + P  GFG++ R ++  +  G + PGPGAY LKST+  + + S IRS   +++RGRE FGS  +   DR C  EPGPG Y  +       + NP+   AP+++FPK  G + R  +   P     +    +G QVLS++ S     FG G  R       T D+     GPG Y+   + G +Q+DSRK N  G +F KA
Sbjct:   24 IITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGS-KIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPK--GCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACG-KQVDSRKRNGGGVRFGKA 229          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LUA5_ECTSI1.220e-17487.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVV8_9STRA3.240e-7649.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SYT1_9STRA1.530e-6245.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YJJ1_AURAN1.440e-4744.29Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0WEQ1_9STRA8.210e-2934.73Uncharacterized protein AlNc14C76G5101 n=2 Tax=Alb... [more]
H3H517_PHYRM1.160e-2737.31Uncharacterized protein n=8 Tax=Peronosporaceae Ta... [more]
D0NDE2_PHYIT2.080e-2736.78Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A8K1CPW0_PYTOL1.270e-2635.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WN56_GLOUD5.600e-2431.05Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
W7T5U8_9STRA1.980e-2235.71Flagellar associated protein n=1 Tax=Nannochlorops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1804823..1809098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.5
Seed ortholog evalue8e-138
Seed eggNOG ortholog2880.D8LUA5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sperm-tail PG-rich repeat
EggNOG OGs2CN1A@1,2QT9S@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_004280.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size831
Cds size831
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15607.1prot_C-linearis_contig8.15607.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1804823..1809098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.9362307-CDS-C-linearis_contig8:1804822..18049481622930534.9362307-CDS-C-linearis_contig8:1804822..1804948Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1804823..1804948 +
1690881119.2508473-CDS-C-linearis_contig8:1804822..18049481690881119.2508473-CDS-C-linearis_contig8:1804822..1804948Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1804823..1804948 +
1622930534.9547505-CDS-C-linearis_contig8:1805587..18056761622930534.9547505-CDS-C-linearis_contig8:1805587..1805676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1805588..1805676 +
1690881119.270959-CDS-C-linearis_contig8:1805587..18056761690881119.270959-CDS-C-linearis_contig8:1805587..1805676Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1805588..1805676 +
1622930534.9733682-CDS-C-linearis_contig8:1806074..18061591622930534.9733682-CDS-C-linearis_contig8:1806074..1806159Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1806075..1806159 +
1690881119.2812533-CDS-C-linearis_contig8:1806074..18061591690881119.2812533-CDS-C-linearis_contig8:1806074..1806159Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1806075..1806159 +
1622930534.9917703-CDS-C-linearis_contig8:1806801..18068881622930534.9917703-CDS-C-linearis_contig8:1806801..1806888Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1806802..1806888 +
1690881119.2896829-CDS-C-linearis_contig8:1806801..18068881690881119.2896829-CDS-C-linearis_contig8:1806801..1806888Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1806802..1806888 +
1622930535.0095792-CDS-C-linearis_contig8:1807364..18074631622930535.0095792-CDS-C-linearis_contig8:1807364..1807463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1807365..1807463 +
1690881119.299155-CDS-C-linearis_contig8:1807364..18074631690881119.299155-CDS-C-linearis_contig8:1807364..1807463Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1807365..1807463 +
1622930535.0282502-CDS-C-linearis_contig8:1808102..18082341622930535.0282502-CDS-C-linearis_contig8:1808102..1808234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808103..1808234 +
1690881119.3091557-CDS-C-linearis_contig8:1808102..18082341690881119.3091557-CDS-C-linearis_contig8:1808102..1808234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808103..1808234 +
1622930535.0488455-CDS-C-linearis_contig8:1808601..18086851622930535.0488455-CDS-C-linearis_contig8:1808601..1808685Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808602..1808685 +
1690881119.3186798-CDS-C-linearis_contig8:1808601..18086851690881119.3186798-CDS-C-linearis_contig8:1808601..1808685Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808602..1808685 +
1622930535.064737-CDS-C-linearis_contig8:1808969..18090981622930535.064737-CDS-C-linearis_contig8:1808969..1809098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808970..1809098 +
1690881119.3273218-CDS-C-linearis_contig8:1808969..18090981690881119.3273218-CDS-C-linearis_contig8:1808969..1809098Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1808970..1809098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15607.1

>prot_C-linearis_contig8.15607.1 ID=prot_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=277bp
LSDRSLGGDCLPGMANSKSSPLLKMRRTLMDSYNETVRSAPKIGFGTAGR
PSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLK
AIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPGP
GHYNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPG
STGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGR
GAASPYPSAPAATLSGREKFGSPFGW*
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mRNA from alignment at C-linearis_contig8:1804823..1809098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15607.1 ID=mRNA_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4276bp|location=Sequence derived from alignment at C-linearis_contig8:1804823..1809098+ (Chordaria linearis ClinC8C monoicous)
CTTTCGGACCGCAGCTTGGGAGGCGACTGCCTGCCCGGCATGGCAAACTC CAAGTCGTCCCCTTTGCTGAAGATGAGGCGGACGCTTATGGACAGCTACA ATGAGACAGTGCGGAGTGCTCCCAAGGTGGGGTCCTTGAAGTCGCCGAAA CATTTAGGAGAATCGAAAACTGTTCAGTTTGGTACTCCATAACTACTTGT AGGATCGGCAGCCAACGCGTTGGAATGTTTGGCTTTCACGATCACGGCAG TGCCATTGCCAACGCACTCCCTCTGAAACAGTAGCTTAGCTCTTAAGCAC TTGAAGAACAAAGTAGGTTTGGATGACATTTCGCCGCCACAAGCAGCATA TAAATAGTTCAACAGCGAGAAAATGGCGGACAAGACCTTGAGTGTGGTTC GTTTGAAAGGTACAACAAGTAGACGTGTGCTCATGCTGTGGTTTTGAGAG GTAGCGCGTATTTTGGTGAACTAAGGCTTTTAACATCCCGCGAGTGTATC GCATCTAAATTATCACTTTGGCTGCCGAGTGCCTTACCCATACGTTGTCA GTTAGGTGGTGCGCGTGTGCCATGGGCTCATGCCTAAAGCAATGGACTCA AAACTATAGGGACCCCCAGTAGTTGGGCGTTAGTCACTCAACCTCTCGGA AAGAGATGTTGCAACATGCACCAATATACTATGTATACAACCATTTGTTT GCGTATCCAAAACCACATGTCGGCGAAAAATGATAAAAAGAACGCGAAAC ACGCACGCACACCAGATTGGGTTCGGCACAGCCGGACGCCCGTCCCTGAA TGACGGAGGGGCTGAAGCTCCTGGACCGGGAGCATATCAACTGAAATCGA CCATGTAAGCGACACAGGGTTTTTACCAAGCAAAACGCGGCACAGACCAA CCCAAAAGTCCCTTTCCAACGCAATGCACGTTTCTCGATAACTCACTCGC CGTCCCTGTCGCCGTACATATAACCAGTTCAGTTCCGGTGTTGTACTCGG AGGTTGAGTCTTGCATGCACACATTTTTCGGCGTTCTAAGCACAGACAAG GTAGGCACGTACCTCAACCAGGGAATTTCACCACACAGAACAAGCATGGA ATAATGGAATAAGGTTTTCACGCTGATCAACCCCTCCGAAATTCACAAAC AGTTGATCCTCAATCTGTTACGGTTACGCGGTGAAGGTCCCTCCTTGTCA CCCTCAACATACCACAAAAGAACCCCACTCCGTGCCGCCGCCGCACATTC AGGTTTGTGAATCCCAGCAGCATGATTCGGTCTCCTCCCAGTTACACCAT GCGAGGACGCGAGAAGTTTGGATCTCCCGATTTGAAAGTGAGTGTACAAT AGTCTACCATAGTGGTCGTTGTTTTGTTCTCAAGCATGCATACGTGTCTC CCTCCGCACCATTGGAGACAACTACGTAAAAAAGGCTTGCCTAATTTCCT CCCCCGTGATTTTCTTGGTCCGGTATCTCTTATGTCCGTAGCATGGCGCC GTATGCATTGAGTCCACCGTAAGAGGGCGGTCTTGACTAGTCAAACTATG CTGTCGAGAGTGATAATGGTGGTGATGTCGAGGTGGGAGGGGCGGGAGGC TGCATCGTATGTGATCGTACATTCTCCTGTTTCAGACGGGCGGGACTTCC TAGGTCAGGAAGAAGAGTTGTTTGTCTGACGCTGGTTGGCTGCGGCGATT TCACGCTGCTAACCGGAGGGTGCCGGAGACATCGTGGTTAGAGTGAACCA GCGTTGTAGTTGAAGCAATGCCCACAACCACCACCCGGGTCTTGAAATAC TCATGTCTCGGTTCGGGCAGGGGTGGCGGTGATGCCAATCCCATCCAGCA CGCGCGGGACACGTGTCCGGGTTTTGTACATGTTGATTGTTAGAGTCCGC GTAATCCCTTCTTAACACACGCCGATTTATAATCCTGGAAATCACACCTA GCGTGCTGTTGTTGGTAAAACGAACGCAGGCCATCGACCGCACATGCCAA ATGGAGCCTGGACCGGGGCACTACAAGATGGCCATCGTCAACCCTCAGGA GGACAATGCCCCAAAGGTACGTAGCATCTGGTGACGTGATGGGATGGAGA GATGAAAGTGCAACCGTGTCGATCTCAGCACTTGTCTTTTGGATGCCGTC ACTTTTGACTCTACCTGCATCGCGCACATCTACAATTGGGTTCTGTCAAA GGAGGCGGAGGCTTCACTTTTGGTTGTCGGTAGGGTTTTGGGGACTACGG TAGGTCGCAGACAGGCTCAACATTCTACCCCCCCCTCGCCTTTTGTTCTT TCTCACCAAACCCCTCGTCCACGACCTAGACGCTTTGAATCCCGCGGTAT CGCGCACCCCCTCATTCACCCGGGGATAAAAACCTTCTTCGTAAGGTATA ATAGTCCGAGGATACACAAAACATGAACGCCAGTTGCTGCGATGTAGTGC GATTTTCGATCCTCCGTCGTGAAAAAAAATGTTTTTGTCATCCTTGGCGC CTGCACTCCTCCCGCGTGCTTCTTGCCTTTCTCACGATGCAGTACACGTT TCCCAAGGACACTGGTGCAGCGGTAAGAGAAAACGTTGTCCGTGGGCCGG GGCCGGGTCACTACAATATGCATCCCGGTGTGGGAAAACAGGTGTGAGAT ACATAGGTTGGTTCAACTTGTCGGGGGAGAGTGTCCTGGACGTATTGGCA TTTAAAGCGCGCGTTGGCATGGTTTGGGAGAGAAGGGAACATTCACCAGG GAGGGGGCGCGAGGGATCTAGGGGGGGGGGCGAGAGAGGTAGAGGAAGAT GGAGGGAGTTAACGAGAGAAAGACAAAGTACAAACAGAGAGGCAGGATCG CGGTTTGTTGCACGGTTTCATGCCTGTCTTACCGCGGTGTTGGCGGTTGA CGTGCCTGCGCTTCGGCGGCTCTGCCCAGTCAAACCTTAAATCGGACACC CGCGCCGTAAATAGAGCGCCACAGATCACAGATACGCGCTGTGCTTTTGG CAACAAATATTGCTGTGCACGCGAAATCGTCAAAACATGGCAAAACCTCA CCATGAACCCTTGTCTTATTTGTGCCATGTCACGAAATACATTGGCGTCA CGGCGGTCTCGGCTCTAAAAACGAACCCCCCTCTACCTAGAAGACGTTAG TTACCCCTCTCGCTTTTCCTCACGCCCTTCTCAGCTCTGAAAAGTATGGG TTGCACCCCGAGAAATACAAATACGAGAGCGAATACCAAAACGAACGGGT GCAATGTGATGACGATGGCCGCGACGACAGGTTTTGTCGACCAAGCGGAG TCACGCCGGTGTGGGCTTCGGGACGGGCAACCGGCCCGATTTGTTGGTGC AGAGCACCGCTGACGTGGGTCCTGGGGAATACTCCATCCCAGGCTCGACC GGAGAGCGGCAGGTATGTCGTTTTATTCTTGCTGTTTGGTGTAGTGGGAA CCTTCTCTTTTTGGAACGTTGACCGAATAGAAATTATCGGGAGAAAGGTA ATGCAGATAAGACTGGCACATGGCACGGTGTAGTCTCAGCACGTTCTTGG GCCGAACAATGTGTATCTCCTGACCTGAGTCTTAGTTGAACACCGAAGCA CAAACTCGTCCACATTGGGGGTTTTCCGGTCAGGTTGTCGTTGCACACTA TCCAACGTAAATCTTCATCGACGTGTGCTTGCGTCCTCTTCCTTTGTGCC TCTGGCAGTCCCTTTCACGGGCTCTCTCGCTTATTGTCTCTCAAAACGCG ACGGATTTGTTTTTTCTCTTTTTACAAAGATCGACTCGAGAAAGCACAAC AAAAGCGGAGCGAAGTTTTCCAAGGCCCCCAGGATGGGCAAGTCCGGCAG CTTGGAAGACTTGGTGAGTCAGCCCTGGCCAAAGCCAGCCGGCCTAAAAC GTCGGCTGCATCACATTCACGTGTACCGCGGTCACACCCAGCCGCGATGA CAGATGACCGTGTCATGATGCAACGCGCATCTCCGTCCAGGGGCGTCAAC TGTCATTTTGATTTCGTTGCATCGTCTGCTGGGCCCCTACGCCCTCTTCC CCCTCTAACGTTCTCTCCATGCACCTCCCTTCCATCACGCCGTTACCCTT TTACATTTTTTATGGCTCATCAACTCGAAACAAAATTTCTACCACAGGCG CCCGGACCGGGAAACTACCGCTTGCCTCCGGGTATATGCGGGCGGGGCGC GGCGTCGCCGTACCCGTCGGCTCCCGCAGCCACTTTGAGCGGGCGGGAAA AGTTCGGCTCCCCGTTCGGGTGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:1804823..1809098+

>mRNA_C-linearis_contig8.15607.1 ID=mRNA_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at C-linearis_contig8:1804823..1809098+ (Chordaria linearis ClinC8C monoicous)
CTTTCGGACCGCAGCTTGGGAGGCGACTGCCTGCCCGGCATGGCAAACTC
CAAGTCGTCCCCTTTGCTGAAGATGAGGCGGACGCTTATGGACAGCTACA
ATGAGACAGTGCGGAGTGCTCCCAAGCTTTCGGACCGCAGCTTGGGAGGC
GACTGCCTGCCCGGCATGGCAAACTCCAAGTCGTCCCCTTTGCTGAAGAT
GAGGCGGACGCTTATGGACAGCTACAATGAGACAGTGCGGAGTGCTCCCA
AGATTGGGTTCGGCACAGCCGGACGCCCGTCCCTGAATGACGGAGGGGCT
GAAGCTCCTGGACCGGGAGCATATCAACTGAAATCGACCATATTGGGTTC
GGCACAGCCGGACGCCCGTCCCTGAATGACGGAGGGGCTGAAGCTCCTGG
ACCGGGAGCATATCAACTGAAATCGACCATGTTTGTGAATCCCAGCAGCA
TGATTCGGTCTCCTCCCAGTTACACCATGCGAGGACGCGAGAAGTTTGGA
TCTCCCGATTTGAAAGTTTGTGAATCCCAGCAGCATGATTCGGTCTCCTC
CCAGTTACACCATGCGAGGACGCGAGAAGTTTGGATCTCCCGATTTGAAA
GCCATCGACCGCACATGCCAAATGGAGCCTGGACCGGGGCACTACAAGAT
GGCCATCGTCAACCCTCAGGAGGACAATGCCCCAAAGGCCATCGACCGCA
CATGCCAAATGGAGCCTGGACCGGGGCACTACAAGATGGCCATCGTCAAC
CCTCAGGAGGACAATGCCCCAAAGTACACGTTTCCCAAGGACACTGGTGC
AGCGGTAAGAGAAAACGTTGTCCGTGGGCCGGGGCCGGGTCACTACAATA
TGCATCCCGGTGTGGGAAAACAGTACACGTTTCCCAAGGACACTGGTGCA
GCGGTAAGAGAAAACGTTGTCCGTGGGCCGGGGCCGGGTCACTACAATAT
GCATCCCGGTGTGGGAAAACAGGTTTTGTCGACCAAGCGGAGTCACGCCG
GTGTGGGCTTCGGGACGGGCAACCGGCCCGATTTGTTGGTGCAGAGCACC
GCTGACGTGGGTCCTGGGGAATACTCCATCCCAGGCTCGACCGGAGAGCG
GCAGGTTTTGTCGACCAAGCGGAGTCACGCCGGTGTGGGCTTCGGGACGG
GCAACCGGCCCGATTTGTTGGTGCAGAGCACCGCTGACGTGGGTCCTGGG
GAATACTCCATCCCAGGCTCGACCGGAGAGCGGCAGATCGACTCGAGAAA
GCACAACAAAAGCGGAGCGAAGTTTTCCAAGGCCCCCAGGATGGGCAAGT
CCGGCAGCTTGGAAGACTTGATCGACTCGAGAAAGCACAACAAAAGCGGA
GCGAAGTTTTCCAAGGCCCCCAGGATGGGCAAGTCCGGCAGCTTGGAAGA
CTTGGCGCCCGGACCGGGAAACTACCGCTTGCCTCCGGGTATATGCGGGC
GGGGCGCGGCGTCGCCGTACCCGTCGGCTCCCGCAGCCACTTTGAGCGGG
CGGGAAAAGTTCGGCTCCCCGTTCGGGTGGTGAGCGCCCGGACCGGGAAA
CTACCGCTTGCCTCCGGGTATATGCGGGCGGGGCGCGGCGTCGCCGTACC
CGTCGGCTCCCGCAGCCACTTTGAGCGGGCGGGAAAAGTTCGGCTCCCCG
TTCGGGTGGTGA
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