mRNA_C-linearis_contig8.15607.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: D8LUA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA5_ECTSI) HSP 1 Score: 492 bits (1266), Expect = 1.220e-174 Identity = 241/276 (87.32%), Postives = 253/276 (91.67%), Query Frame = 1
Query: 1 LSDRSLGGDCLPGMANSKSSPLLKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPFGW 828
L SLGG+ LP SKSS +LKMRRTLMDSYNETVRSAPKIGFGTAGRP L DGGAEAPGPGAYQLKSTMFVNPSSMIRSPPS+TMRGREKFGSPDLKAIDRTCQ+EPGPGHYK+AIVNPQE+NAPKYTFPKD GA +RENVVR P N+HPGVGKQVLSTKRSH GVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQ+DSR+ NKSGAKFSKA RMGK GSLED+APGPGNYRLPPGICG+GAASPYPSAPAATLSGREKFGSPFGW
Sbjct: 13 LVSNSLGGEYLPAATKSKSSDILKMRRTLMDSYNETVRSAPKIGFGTAGRPPLQDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSFTMRGREKFGSPDLKAIDRTCQLEPGPGHYKLAIVNPQEENAPKYTFPKDAGAMIRENVVRAPGPGRYNLHPGVGKQVLSTKRSHNGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQVDSRRCNKSGAKFSKAVRMGKPGSLEDVAPGPGNYRLPPGICGQGAASPYPSAPAATLSGREKFGSPFGW 288
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A835YVV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV8_9STRA) HSP 1 Score: 242 bits (617), Expect = 3.240e-76 Identity = 135/272 (49.63%), Postives = 171/272 (62.87%), Query Frame = 1
Query: 67 LKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMA-IVNPQEDNAPKYTFPKDTGAAVRENVVR--GPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKA---PRMGKSG------------SLEDLA--PGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
+KM RT++DSYN TV AP++GFGTA RP+L DGG + PGPGAY +KSTMF NP S RSPP +++RGREKFGSPDLKA DR QMEPGP YK+ I ++ P Y+FP+ + A R P + VGKQVLSTKRSH+G FGTG RP L+ ST D+GPG+Y IPG+ G +Q+DSRK ++F+K P++ K G + +D A PG G Y +P + R S + S P A +SGREKFGSPF
Sbjct: 1 MKMGRTVIDSYNATVPMAPRVGFGTADRPALLDGGDDVPGPGAYAIKSTMFKNPRSCFRSPPCFSIRGREKFGSPDLKACDRATQMEPGPAAYKIPHIAGSEQRQPPAYSFPRSSWAKSDAVTARDISPGPGTYALPAAVGKQVLSTKRSHSGPAFGTGGRPPLISVSTDDIGPGDYEIPGNLGTKQVDSRKTTHQASRFAKPGGPPKVKKGGHGAHPQTPAESHAEDDFAHVPGAGAYNIPSTLV-RNPCSMFRSPPVARMSGREKFGSPF 271
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A8J2SYT1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYT1_9STRA) HSP 1 Score: 206 bits (525), Expect = 1.530e-62 Identity = 118/258 (45.74%), Postives = 163/258 (63.18%), Query Frame = 1
Query: 67 LKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLL-VQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSG-SLED---LAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
L + +++DS+N T +++P FG+A RP L+D PG GAY +K+T+ N P S I S P +++R REKFG P L+A+D EPGPG Y +NP +DN PKY+FPK G +++ P + VG+QVLSTK ++ G+GFG G RP LL VQ+ DVGPGEY + S +Q+DSRK KFS++ R S +++D PGPG Y+LP G+CG G++ P+ +AP A+LSGREKFGSPF
Sbjct: 5 LGLDHSIIDSFNATKKTSPSYQFGSAIRPRLSDA-EPTPGAGAYSIKTTILGNVPDSRIVSTPQFSLRSREKFGDPMLRALDAGTASEPGPGWYTPKQINPNDDNPPKYSFPK--GHFIKDKARFSPGPGAYAIPSSVGRQVLSTKSNNNGMGFGQGERPPLLRVQN--DVGPGEYGVGISACRKQVDSRKKTSGFVKFSRSARDKTSSMTMQDELQARPGPGTYQLPSGLCGSGSSYPFRAAPRASLSGREKFGSPF 257
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: F0YJJ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ1_AURAN) HSP 1 Score: 171 bits (434), Expect = 1.440e-47 Identity = 97/219 (44.29%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 124 KIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSL----EDLAPGPGNYRLPPGICGRGAASP 765
++ FG+A RP L++ PG GAY +K+T+ N P S I S P +++R REKFG+P L+A+D +PGPG Y VNP++DNAPKY+FPK G +++ P + VGKQVLSTK ++ G+GFG G RP LL DVGPGEY + S ++Q+DSRK KFS+ R + + E+ PGPG Y+LPPG+CG G++ P
Sbjct: 92 RVSFGSAIRPRLSEA-EPTPGAGAYSIKTTILGNVPDSKIHSAPQFSLRSREKFGNPMLRALDTETARQPGPGWYTPKQVNPKDDNAPKYSFPK--GHFIKDKARLSPGPGAYVIPSSVGKQVLSTKSNNNGMGFGQGERPPLLRVHN-DVGPGEYGVGISACKKQVDSRKKTSGFVKFSRCARDKATSTSAKDEEEALPGPGTYQLPPGLCGGGSSYP 306
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: F0WEQ1_9STRA (Uncharacterized protein AlNc14C76G5101 n=2 Tax=Albugo TaxID=65356 RepID=F0WEQ1_9STRA) HSP 1 Score: 120 bits (300), Expect = 8.210e-29 Identity = 83/239 (34.73%), Postives = 125/239 (52.30%), Query Frame = 1
Query: 115 SAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSPDLKAID-RTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRM--GKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
+AP FG++ RP ++ A++PGPG+YQ+ ST+ S ++ PS ++ GR+KFGS AID + PGPG Y +VN +E NAPK++ K ++ N +GP +G LST++S+ F G R L +T DVGPG+Y + ++ +Q S + F R KS +L++ G G Y G+ + S YPS+P ++SGR KFGS F
Sbjct: 44 TAPYTVFGSSPRPKPSND-AKSPGPGSYQIPSTLGKAVLSTVQQAPSCSLSGRDKFGS----AIDVKNAASSPGPGDYTSKVVNLREQNAPKFSLGKKWNSSADSNK-KGPGPGAYETANCIGPTFLSTQKSNPASAFPRGERTSLTQNNTPDVGPGQYGVVLTSVGKQTISTLSTPASFSFGTQERSKPSKSKALDNA--GQGRYYSARSSVGKQSESIYPSSPGISMSGRTKFGSHF 274
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: H3H517_PHYRM (Uncharacterized protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=H3H517_PHYRM) HSP 1 Score: 117 bits (292), Expect = 1.160e-27 Identity = 97/260 (37.31%), Postives = 127/260 (48.85%), Query Frame = 1
Query: 58 SPLLKMRRTLMDSYNETVRS----APKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
SP+ + + S E V S AP FG+ RP G A++PGPGAYQ+ S++ S + PS ++ GREKFGS DLK+ + PGPG Y AIVNP+E AP Y+ K + XXX P +G+ VLST++S+ F R L STADVGPG+YS+ RQ S + + F R S D PGP Y + G S Y +AP ++SGR KFGS F
Sbjct: 21 SPIHQAFTDIKSSCGEQVDSRKVTAPVTVFGSGTRPRTTSG-AKSPGPGAYQIPSSIGKPVLSTMVQAPSCSISGREKFGSTADLKSSAKF----PGPGDYTTAIVNPRERAAPSYSLGKKWSPMTGQKXXXXXXXXETT--PTIGRTVLSTQKSNPMSSFPKVERKPLRNASTADVGPGQYSVVVEAVGRQAVSTLTSAAAYSFGTESRSKTGRSTADGVPGPNMYDHKSSV-GWQVESTYRTAPKCSMSGRTKFGSHF 272
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: D0NDE2_PHYIT (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NDE2_PHYIT) HSP 1 Score: 116 bits (290), Expect = 2.080e-27 Identity = 96/261 (36.78%), Postives = 126/261 (48.28%), Query Frame = 1
Query: 55 SSPLLKMRRTLMDSYNETVRS----APKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
SSP + + S E V S AP FG+ RP ++G +++PGPGAYQ+ S++ S + PS ++ GREKFGS DLK T PGPG Y IVNP+E AP Y+ K + + XXX P +G+ VLST++S+ F R L STADVGPG+Y + RQ S H+ + F R S S D Y P G S Y +AP ++SGR KFGS F
Sbjct: 17 SSPTHQAFTDIKSSVGEQVDSRKTTAPYTVFGSGTRPRTHNG-SKSPGPGAYQIPSSIGKPVLSTMAMAPSCSISGREKFGSTADLK----TSAKFPGPGDYNTHIVNPRERAAPSYSLGKKWSPMAGDK--KXXXXXAYESSPTIGRTVLSTQKSNPVSSFPKVERKPLNASSTADVGPGQYGVVVEAVGRQTVSTVHSAAAFSFGTEARSRTSRSAADRIGS--KYYDPRSSVGTQVESTYRTAPKCSMSGRTKFGSHF 268
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: A0A8K1CPW0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPW0_PYTOL) HSP 1 Score: 114 bits (285), Expect = 1.270e-26 Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 1
Query: 115 SAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
+AP FG++ RP + G +++PGPGAYQ+ S++ S + + P+ ++ GREKFGS D+K T PGPG Y IVNP+E +APKY+ K + + P +G+ VLST++ + F R L STADVGPG+Y + + +Q S + + F R K PGP +Y+ P G+ S Y +AP ++SGR KFGS F
Sbjct: 47 TAPTTVFGSSTRPQTSSG-SKSPGPGAYQIPSSIGKPILSTMNAAPACSISGREKFGSTSDMK----TAANSPGPGDYTSTIVNPRERSAPKYSLGKKWTQL--SGMKKFPGPGEYEAPTTIGRTVLSTQKQNPMPAFPRVERKPLAATSTADVGPGQYGVVVAAVGKQPLSTLTSAAAFSFGNEQRS-KLAKTGVEVPGPASYQ-PKSSVGKQVESTYRTAPKISMSGRTKFGSHF 274
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: K3WN56_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WN56_GLOUD) HSP 1 Score: 107 bits (267), Expect = 5.600e-24 Identity = 86/277 (31.05%), Postives = 130/277 (46.93%), Query Frame = 1
Query: 22 GDCLPGMANSKSSP---------LLKMRRTLMDSYNETVRSAPKIGFGTAGRPSLNDGGAEAPGPGAYQLKSTMFVNPSSMIRSPPSYTMRGREKFGSP-DLKAIDRTCQMEPGPGHYKMAIVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQIDSRKHNKSGAKFSKAPRMGKSGSLEDLAPGPGNYRLPPGICGRGAASPYPSAPAATLSGREKFGSPF 822
G PG + + SP + ++ + + + +AP FG++ RP G ++PGPGAYQ+ S++ S + P+ ++ GREKFGS D K T PGPG Y IVNP+E AP+Y+ K G + + P +G+ LST++S+ F R L +T DVGPG+Y++ + +Q S + + F R S D PGP +Y + G+ S Y +AP ++SGR KFGS F
Sbjct: 11 GSSSPGKSKAPGSPGHFGGAYTGYVDIKSSCGEQVDSRKATAPVTVFGSSTRPHTTSGN-KSPGPGAYQIPSSIGKPVLSTMMQAPACSISGREKFGSTGDAKLSGST----PGPGDYTSEIVNPRERAAPRYSLGKKWGNL--SEMKKSPGPGSYESSTTLGRTFLSTQKSNPMPAFTKVERKPLTSGNT-DVGPGQYAVVVAAVGKQPISTLSSAASYSFGTELRTKVSRGTVDAVPGPNSYPSKSSV-GKQVESTYRTAPKCSMSGRTKFGSHF 278
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Match: W7T5U8_9STRA (Flagellar associated protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5U8_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.980e-22 Identity = 75/210 (35.71%), Postives = 109/210 (51.90%), Query Frame = 1
Query: 85 LMDSYNETVRSAPKIGFGTAGRPSL--NDGGAEAPGPGAYQLKSTMFVNPS-SMIRSPPSYTMRGREKFGSPDLKAIDRTCQMEPGPGHYKMA-------IVNPQEDNAPKYTFPKDTGAAVRENVVRGPXXXXXNMHPGVGKQVLSTKRSHAGVGFGTGN-RPDLLVQSTADV-----GPGEYSIPGSTGERQIDSRKHNKSGAKFSKA 666
++ SY + P GFG++ R ++ + G + PGPGAY LKST+ + + S IRS +++RGRE FGS + DR C EPGPG Y + + NP+ AP+++FPK G + R + P + +G QVLS++ S FG G R T D+ GPG Y+ + G +Q+DSRK N G +F KA
Sbjct: 24 IITSYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGS-KIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPK--GCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSSGGGPGFYNAVSACG-KQVDSRKRNGGGVRFGKA 229 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15607.1 >prot_C-linearis_contig8.15607.1 ID=prot_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=277bp LSDRSLGGDCLPGMANSKSSPLLKMRRTLMDSYNETVRSAPKIGFGTAGRback to top mRNA from alignment at C-linearis_contig8:1804823..1809098+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15607.1 ID=mRNA_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4276bp|location=Sequence derived from alignment at C-linearis_contig8:1804823..1809098+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1804823..1809098+ >mRNA_C-linearis_contig8.15607.1 ID=mRNA_C-linearis_contig8.15607.1|Name=mRNA_C-linearis_contig8.15607.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at C-linearis_contig8:1804823..1809098+ (Chordaria linearis ClinC8C monoicous)back to top |