mRNA_C-linearis_contig8.15605.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15605.1
Unique NamemRNA_C-linearis_contig8.15605.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 1.410e-93
Identity = 164/300 (54.67%), Postives = 197/300 (65.67%), Query Frame = 3
Query:   30 ASVVTVLACVTIPVVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRC---------RGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDG---DSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
            +SV  VL CV +PV+  Y N+   T P        TAQ VH RRR+QHA  G+ +  GYKW I DARTVV +LS++CA FLALH+LRRRLK+VD+LY+ L+GPLLRP EIRG LPG FWF++GS  AVA+F +DVALQS+LHLS+GDPVASVVG++ G+ +R+LP GKSLAG+ AAF  CS+STLLLF C         R   H  D+D  SS                       +FG FSAC  +  G          L LW+ALLGG+SGAVGE LPLGVDDNLSMPIVSG  FL L
Sbjct:    8 SSVAAVLVCVGLPVLFGYHNRQVETAP--------TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIACASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGQLPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGRDSDHVGDSDLLSSL----------------------IFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLAL 277          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A485LBM6_9STRA (Aste57867_18956 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBM6_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.100e-37
Identity = 93/249 (37.35%), Postives = 127/249 (51.00%), Query Frame = 3
Query:  135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQL--WYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
            T Q +H+RR+VQHA SG+ +  G  +A   +  VV+VL  S   F  +  LR++ K V+  YL + GP+LR  EI   LPGAFWF+LGSA+++A F +DVA  S+LHLS+GDP AS  G+ LG  S  L +GK++AG    F VC ++++                                                A   L DG       L       +L GL+G +GE L LGVDDNLS+P+VSG
Sbjct:   62 TTQQLHIRRKVQHAGSGLLVVAGTFYA--SSVQVVIVLGCSAVAFYIITYLRKQYKVVNTTYLHVFGPILRQHEIAHRLPGAFWFLLGSALSLAFFSKDVAQLSILHLSLGDPCASFFGITLGHHSHKLANGKTIAGVVGCFVVCLLTSI------------------------------------------------AFLALVDGPVAHGTTLATKGLVMVLAGLAGTLGEALSLGVDDNLSLPLVSG 260          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A067D3P6_SAPPC (Phosphatidate cytidylyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D3P6_SAPPC)

HSP 1 Score: 140 bits (353), Expect = 1.130e-34
Identity = 88/261 (33.72%), Postives = 136/261 (52.11%), Query Frame = 3
Query:  111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
            RS      T Q++HVRR+VQHA +G+ I +   +    A    V+L++    F  +  +R++ KAVD +YL++ GP+LR  E+   LPGAF+F++GSA++  ++P+ +A  ++LHLS+GDP AS  G+ LG  S  L +GK+LAG    F VC +S++         H++  D S+                                              QL    + G++GA+GE L +G DDNLSMP+ SG +F+TL
Sbjct:   52 RSNYSNVRTTQELHVRRKVQHAGTGVLIVVATFYG--SALEAAVILAICALTFYCVSFMRKQSKAVDAIYLQIFGPILRQHEVGHRLPGAFYFLMGSALSFVLYPKFIAQLAVLHLSLGDPCASFFGITLGQHSTKLWNGKTLAGVIGCFLVCLLSSVAFLTT--ATHDAITDLST--------------------------------------------FQQLLLMGMAGIAGAIGEVLNVGCDDNLSMPLFSG-LFMTL 263          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A024US71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US71_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.430e-34
Identity = 90/249 (36.14%), Postives = 131/249 (52.61%), Query Frame = 3
Query:  135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGV 881
            T Q++H+RR++QHA SG+ + +G  +A   +  V +VL+ S A F  + QLR++ K V+  YLR+ GP+LR  EI   LPGAFWF+LG   ++ +FP+DVA  S+LHLS+GDP AS+ G+  G  +  L +GK++AG      VC ++++           S  DTS                   H S     G  + C                      G +G +GE L +G DDNLS+P+VSGGV
Sbjct:   65 TTQELHIRRKIQHAGSGVLVVVGSFFA--SSLQVSIVLACSAAAFYIVAQLRQQYKVVNSTYLRVFGPILRQHEIAHRLPGAFWFLLGCCGSLLLFPKDVAQLSVLHLSLGDPCASLFGLTWGHHTSKLSNGKTIAGVVGCMFVCFVTSVGFL--------SVVDTSIQ-----------------HLSGIQRVGVMALC----------------------GAAGTLGEVLYVGCDDNLSLPLVSGGV 264          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A6G0XP90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP90_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.930e-34
Identity = 92/247 (37.25%), Postives = 126/247 (51.01%), Query Frame = 3
Query:  135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
            T + +H+RR+VQHA SG+ + L   +    +  V VVL  S AVF  + QLR++ K V++ YL + GP+LR  EI   LPGAFWF+LG A ++ +FP++VA  S+LHLS+GDP AS  G+ LG  S  +P+GK+LAG    F VC +  +           S  DTS    H G                                      L +    +    +G +GE L LG DDNLS+PIVSG
Sbjct:   95 TTKQLHIRRKVQHAGSGLLVVLASFYG--SSVQVAVVLICSAAVFYVVTQLRKQSKVVNQTYLHVFGPILRQHEIAYRLPGAFWFLLGCAGSMLLFPKEVAQLSILHLSLGDPCASFFGITLGQNSPKMPNGKTLAGVIGCFVVCLLCNIGFL--------SIVDTS--IAHLG-------------------------------------LLEKALVVVSCAFAGTLGEALYLGCDDNLSLPIVSG 292          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A1W0ABA5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.170e-33
Identity = 90/261 (34.48%), Postives = 135/261 (51.72%), Query Frame = 3
Query:  111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
            RS      T Q++HVRR++QHA +G+ I +   +  +   TVV  L++   +F  +   RR+ KAVD +YL++ GP+LR  E+   LPGAF+F+ GSA++   +P+ +A  S+LHLS+GDP AS  G+ LG  +  L +GK+LAG    F VC +S++                                           F      A LS       +L Q+      G++GA+GE L +G DDNLSMPI+SG +F+T+
Sbjct:   52 RSSYTNVRTTQELHVRRKIQHAGTGVLIVIATFYGSSIEATVV--LAICALIFYGVSVARRQFKAVDTVYLQIFGPILRQHEVGHRLPGAFFFLTGSALSFVFYPKFIAQLSVLHLSLGDPCASFFGITLGHTTSKLWNGKTLAGVIGCFFVCLLSSIAFL---------------------------------------SFVVHHDIAHLS-------WLKQVLIMGTSGIAGAIGEVLNVGCDDNLSMPIISG-LFITI 263          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: W4H9K3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9K3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.110e-32
Identity = 97/288 (33.68%), Postives = 150/288 (52.08%), Query Frame = 3
Query:   15 GTRTMASVVTVLACVTIP-VVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
            GT ++A+VV ++A + +  VV      N+V           T +++HVRR++QHA SG+ + +G  +A  ++  V VVL+ S   F  + QLR++   V++ YL + GP+LR  EI   LPGAFWF+LG ++++ IF +DVA  S+LHLS+GDP AS  G+ LG  +  L +GK++AG    F VC  +++        A  S  D                                   A ++     E+ ++      L G++G VGE L +G DDNLS+P+VSG
Sbjct:   32 GTSSVAAVVFIVAILLLQFVVVRRPTHNTVR----------TTKELHVRRKIQHAGSGVLVVVGSFYA--NSLQVSVVLACSAVAFYIVAQLRKQNNIVNDTYLHVFGPILRQHEIAHRLPGAFWFLLGCSISLLIFKKDVAQLSVLHLSLGDPCASFFGLTLGHHTTKLANGKTIAGVAGCFVVCFATSV--------AFLSVVD-----------------------------------ASVAHVSGIEKAVVMA----LCGVAGTVGEVLYVGCDDNLSLPLVSG 260          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A1V9Z468_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z468_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.590e-31
Identity = 83/256 (32.42%), Postives = 134/256 (52.34%), Query Frame = 3
Query:  111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAV-FLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
            RS      T Q++H+RR+VQHA +G  I +   +  +   +VV+ +   CA+ F  +  +R++ KAVD +YL++ GP+LR  E+   LPGAF+F+ GSA++  ++P+ +A  S+LHLS+GDP AS  G+ LG  S  L +GK++AG    F VC +S+++       AH++    S                                             + Q+ +    G++GA+GE + +G DDNLSMP++SG
Sbjct:   54 RSNYSNVRTTQELHLRRKVQHAGTGALIVVATFYGTSLEASVVLAI---CALTFYFVSFMRKQSKAVDAIYLQIFGPILRQHEVHHRLPGAFYFLTGSALSFVVYPKFIAQLSVLHLSLGDPCASFFGITLGQHSTRLWNGKTVAGVIGCFLVCLLSSVVFVTL--AAHDAVKSFS--------------------------------------------VIKQMLFMAATGVAGAIGEVVNVGCDDNLSMPLLSG 260          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A2D4BUY6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY6_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 3.790e-25
Identity = 86/250 (34.40%), Postives = 125/250 (50.00%), Query Frame = 3
Query:  129 ADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGA-LPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLG-DRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVS 872
            A T Q +H++R++QHA +G  I     +   DA   V+VL    AVF  LH LR+R K VDE+YL     LLR  EIR   +PGAF+F++G+   +A+FP  +A  ++LHLS+GDP AS+VG      R+    + KSL G+     +CS+ ++L+            D+ +S F                                      ERF+ + W A   GL  +V E + +GVDDNLSMP++S
Sbjct:   36 AVTRQXLHLQRKLQHALTGXMIFAASGFFTVDA--AVLVLFSCAAVFYVLHLLRKRFKRVDEVYLSCFHGLLRHDEIRKTVIPGAFYFLVGAGAVLALFPTPIARLAILHLSLGDPTASLVGTXXRYRRASSASTSKSLEGSLGCLVMCSVVSVLVIT---------RDSGTSEF--------------------------------------ERFV-RAWSA---GLCASVAERIHVGVDDNLSMPLLS 232          
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A7S3PZ99_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ99_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.900e-23
Identity = 62/160 (38.75%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  147 VHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCA-VFLALHQLRRRLKAVDELYLRLMGPLLRPSE-IRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLP-----SGKSLAGTFAAFAVCSMSTLLLFRCRG 605
            +H RRR+QH  +G+   + Y  +      V  +L + C   F ALH  R +  A+  +Y++  GPLLR  E     LPGAFWF+ G+ V V IFP D+A  S+L LS GDP+A+++G+ +G    V+      SGK+L+G+FA F +C    L+ ++C G
Sbjct:   64 LHYRRRIQHVLTGL---IFYTLSFYLPFVVASLLLIICTGAFYALHFFRSKSNAIQNVYMKFFGPLLRDHEKCVFTLPGAFWFLFGTMVTVIIFPMDIARTSILCLSFGDPIAAIIGINVGGPGIVISTKRKSSGKTLSGSFACFCICY---LVSYKCMG 217          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8G9_ECTSI1.410e-9354.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A485LBM6_9STRA3.100e-3737.35Aste57867_18956 protein n=1 Tax=Aphanomyces stella... [more]
A0A067D3P6_SAPPC1.130e-3433.72Phosphatidate cytidylyltransferase n=2 Tax=Saprole... [more]
A0A024US71_9STRA4.430e-3436.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XP90_9STRA8.930e-3437.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0ABA5_9STRA2.170e-3334.48Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4H9K3_9STRA1.110e-3233.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Z468_9STRA1.590e-3132.42Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BUY6_PYTIN3.790e-2534.40Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3PZ99_9STRA5.900e-2338.75Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1784214..1786640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue3.4e-78
Seed eggNOG ortholog2880.D7G8G9
Preferred nameDGK1
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
EC2.7.1.174
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1459
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15605.1prot_C-linearis_contig8.15605.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1784753..1786614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.3974059-UTR-C-linearis_contig8:1784213..17847521622930534.3974059-UTR-C-linearis_contig8:1784213..1784752Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1784214..1784752 -
1690881118.943524-UTR-C-linearis_contig8:1784213..17847521690881118.943524-UTR-C-linearis_contig8:1784213..1784752Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1784214..1784752 -
1622930534.4952803-UTR-C-linearis_contig8:1786614..17866401622930534.4952803-UTR-C-linearis_contig8:1786614..1786640Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1786615..1786640 -
1690881119.0048752-UTR-C-linearis_contig8:1786614..17866401690881119.0048752-UTR-C-linearis_contig8:1786614..1786640Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1786615..1786640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.4156308-CDS-C-linearis_contig8:1784752..17851301622930534.4156308-CDS-C-linearis_contig8:1784752..1785130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1784753..1785130 -
1690881118.9610112-CDS-C-linearis_contig8:1784752..17851301690881118.9610112-CDS-C-linearis_contig8:1784752..1785130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1784753..1785130 -
1622930534.433805-CDS-C-linearis_contig8:1785619..17857161622930534.433805-CDS-C-linearis_contig8:1785619..1785716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1785620..1785716 -
1690881118.9738317-CDS-C-linearis_contig8:1785619..17857161690881118.9738317-CDS-C-linearis_contig8:1785619..1785716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1785620..1785716 -
1622930534.4591238-CDS-C-linearis_contig8:1785951..17861621622930534.4591238-CDS-C-linearis_contig8:1785951..1786162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1785952..1786162 -
1690881118.9834669-CDS-C-linearis_contig8:1785951..17861621690881118.9834669-CDS-C-linearis_contig8:1785951..1786162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1785952..1786162 -
1622930534.4744668-CDS-C-linearis_contig8:1786406..17866141622930534.4744668-CDS-C-linearis_contig8:1786406..1786614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1786407..1786614 -
1690881118.9956803-CDS-C-linearis_contig8:1786406..17866141690881118.9956803-CDS-C-linearis_contig8:1786406..1786614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1786407..1786614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15605.1

>prot_C-linearis_contig8.15605.1 ID=prot_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MASVVTVLACVTIPVVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHA
ASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLR
LMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPV
ASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDN
DTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLL
QLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTLVGASSSSL*
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mRNA from alignment at C-linearis_contig8:1784214..1786640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15605.1 ID=mRNA_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2427bp|location=Sequence derived from alignment at C-linearis_contig8:1784214..1786640- (Chordaria linearis ClinC8C monoicous)
GGTTGCACGCGCGCGGTACTCGCACCATGGCCAGCGTGGTCACTGTGCTG GCATGCGTGACCATTCCTGTAGTCTGTGCTTACCAAAACAAAAACAGCGT GACGGGGCCGAGGAGTCAACCACCGCGTGCTGATACGGCTCAAGACGTCC ATGTACGACGGAGAGTGCAACATGCGGCCTCCGGCATGGGCATCTGTTTG GGCTACAAGTGGGCCATCACAGACGCGCGGACGGGTGAGGAAGAGGCTAT GTTGCCGAAGAGCGTGTATTTCTTCTCTTGTGTGGGTAAAGGAAAGAACG TGTAGCGGTGTAGCGGTAGGTGGCTGGCGACAGACAGAGCCTTAGACTCG TGGTTTGAAAATTTGAATTACTCCGCGTCTGTCTCTCTGTGGCACGCGGC GCCAAAACGTTCCAGACACACACGCGCTCCCAAGTGAAGTGAAGCTTCCC CCCCTCTCCCTCCGCTGGCGAAAAACAGTGGTGGTGGTGCTGAGCCTCTC CTGCGCAGTTTTCCTGGCGTTGCACCAGCTGAGGCGTCGGTTGAAAGCTG TAGACGAGCTATACCTCCGGCTGATGGGTCCACTGCTCCGCCCGAGCGAG ATCCGCGGGGCGCTGCCGGGCGCTTTCTGGTTCATGCTGGGCTCCGCTGT CGCCGTGGCAATTTTCCCGAGAGACGTGGCGCTTCAGAGGTAACAGAGGG AGCAGGCTATTTGCCTCTCTCGGTAGATTTTCAGCGGGTGTGTGGGTATC GTGGGGGCCCGTTTGTCCTTGAAAGCGTGCCGCTCCCACACTTTTACACA AGACATATTTTGTCGCCCCTTGACACCCCCCTCCATCTCTCTCTCTCTCT CTATCCCTATCTCTCTCTCTCTTTCTGCCCCCCTCTCTGTCTCTGTGTGT GTGCTTGTGAAACATCGCGCACAGCCTTCTTCATCTTTCTGTGGGGGATC CGGTCGCATCGGTGGTGGGCGTAAGGTTGGGCGACCGGAGCCGAGTTCTC CCGTCGGGGAAGTCTTTGGCGGTGAGAGGCCTAGAATGGCGTAGCTAGTG CTGTGTCTGTCTGCGAGATGACTAAGCTTGGCCCGATTTTCTTGCTTTTT TTTCACGCTCTCAAACGCGGACCTGCTTACGTTCTCACCCTTTTAACTCA ACCAAACTTTTGGGGCGTGCGTGAGCCGTCATTTGTCACCGACTCGGTAT CTACATACGTGCTACATACGTGCGGGCCGACTTTGAGCAACACAGCAGTG AGAAGCACTTAGGGCTCCGTCGGCAAACACGGCGGTTGGCCTGGTTTTAG TCGTGGTTTTCGTTGTTTTTCTGACAAGGGTATTGCAGTCGGCGAACACG CGTCAATACTTTCCGATTCATGTATTTCGATGGCCAGACATCATAACGAA ATGCGTTTCTCTCAGCGCTCGTGCCATCTCCCTCCCCTTCTACTGCCCTC CGTGCTCATACATACATATGTACCATGTATTTTTTTCATCGCGGGCAAAA CGTCTAAAAGGGCACCTTCGCAGCTTTCGCCGTGTGTTCGATGTCGACGC TGCTACTCTTCCGCTGCCGTGGTTGTGCCCACGAATCCGATAACGATACG AGTAGCAGCTTCTTCCACCGCGGCGGCGAAAGTGATCGCGGTAGATACAG CAATAGCAACCATTGGAGCAGTGGTTCGATGTTTGGCGACTTCAGCGCTT GCGCTGAATTGAGCGATGGTGATAGCCGTGAGAGATTTCTGCTGCAGCTG TGGTACGCGCTGCTGGGAGGCCTCAGCGGGGCCGTCGGAGAGTTTCTCCC GCTCGGAGTAGACGACAACCTCTCCATGCCAATAGTATCGGGAGGGGTGT TCTTAACGTTGGTAGGTGCTTCGAGTTCGAGCCTCTAGAGGGAGGCACGT AGCCGTCATTGTAAATTGGTTGCAGCACCTCCTTCGTGTTCTGCACGGGA AGCGCCACGCGCTTGCCTGAGGCGAACGAAGGTCTGGTATCCGTGTGATT GTGATTGCTTGAAGCGGGGTTTTCAGGTTTCGGTGCGTGGGGAATGGGAA TCGGCGCGAGAGGTAGCGCGCGGGTGTGCTGGCGTCCCTCTGACGAATGT TTTTGTGCCTCGGAACGCTCCCAGCTGTCCGAAAGGTGTGCGGGGTACCA TGCTTGTGAACCGGTGAAGTATCTACGCATTTGCACACTGCTGGGCTTTG TATACGCGTGGCGTGGCCTATTTGATATATCACCAAGCTGCCTTGCGCGC AATGCACAAATACTACAGCTCCTGATCAGTTCAGATGGGCATAGAGCATA GAGATAGAAAAGACATGTTCGAAGTGTTTACATACACAAGGGACACGTAC GTGCTGGTCTGCACCGCATTTGCGTCAGAACATAATGGATGAACATGAGT GCCTACGACGCGCGCGCCTCCGTCCCG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1784214..1786640-

>mRNA_C-linearis_contig8.15605.1 ID=mRNA_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig8:1784214..1786640- (Chordaria linearis ClinC8C monoicous)
ATGGCCAGCGTGGTCACTGTGCTGGCATGCGTGACCATTCCTGTAGTCTG
TGCTTACCAAAACAAAAACAGCGTGACGGGGCCGAGGAGTCAACCACCGC
GTGCTGATACGGCTCAAGACGTCCATGTACGACGGAGAGTGCAACATGCG
GCCTCCGGCATGGGCATCTGTTTGGGCTACAAGTGGGCCATCACAGACGC
GCGGACGGATGGCCAGCGTGGTCACTGTGCTGGCATGCGTGACCATTCCT
GTAGTCTGTGCTTACCAAAACAAAAACAGCGTGACGGGGCCGAGGAGTCA
ACCACCGCGTGCTGATACGGCTCAAGACGTCCATGTACGACGGAGAGTGC
AACATGCGGCCTCCGGCATGGGCATCTGTTTGGGCTACAAGTGGGCCATC
ACAGACGCGCGGACGGTGGTGGTGGTGCTGAGCCTCTCCTGCGCAGTTTT
CCTGGCGTTGCACCAGCTGAGGCGTCGGTTGAAAGCTGTAGACGAGCTAT
ACCTCCGGCTGATGGGTCCACTGCTCCGCCCGAGCGAGATCCGCGGGGCG
CTGCCGGGCGCTTTCTGGTTCATGCTGGGCTCCGCTGTCGCCGTGGCAAT
TTTCCCGAGAGACGTGGCGCTTCAGAGTGGTGGTGGTGCTGAGCCTCTCC
TGCGCAGTTTTCCTGGCGTTGCACCAGCTGAGGCGTCGGTTGAAAGCTGT
AGACGAGCTATACCTCCGGCTGATGGGTCCACTGCTCCGCCCGAGCGAGA
TCCGCGGGGCGCTGCCGGGCGCTTTCTGGTTCATGCTGGGCTCCGCTGTC
GCCGTGGCAATTTTCCCGAGAGACGTGGCGCTTCAGAGCCTTCTTCATCT
TTCTGTGGGGGATCCGGTCGCATCGGTGGTGGGCGTAAGGTTGGGCGACC
GGAGCCGAGTTCTCCCGTCGGGGAAGTCTTTGGCGCCTTCTTCATCTTTC
TGTGGGGGATCCGGTCGCATCGGTGGTGGGCGTAAGGTTGGGCGACCGGA
GCCGAGTTCTCCCGTCGGGGAAGTCTTTGGCGGGCACCTTCGCAGCTTTC
GCCGTGTGTTCGATGTCGACGCTGCTACTCTTCCGCTGCCGTGGTTGTGC
CCACGAATCCGATAACGATACGAGTAGCAGCTTCTTCCACCGCGGCGGCG
AAAGTGATCGCGGTAGATACAGCAATAGCAACCATTGGAGCAGTGGTTCG
ATGTTTGGCGACTTCAGCGCTTGCGCTGAATTGAGCGATGGTGATAGCCG
TGAGAGATTTCTGCTGCAGCTGTGGTACGCGCTGCTGGGAGGCCTCAGCG
GGGCCGTCGGAGAGTTTCTCCCGCTCGGAGTAGACGACAACCTCTCCATG
CCAATAGTATCGGGAGGGGTGTTCTTAACGTTGGTAGGTGCTTCGAGTTC
GAGCCTCTAGGGCACCTTCGCAGCTTTCGCCGTGTGTTCGATGTCGACGC
TGCTACTCTTCCGCTGCCGTGGTTGTGCCCACGAATCCGATAACGATACG
AGTAGCAGCTTCTTCCACCGCGGCGGCGAAAGTGATCGCGGTAGATACAG
CAATAGCAACCATTGGAGCAGTGGTTCGATGTTTGGCGACTTCAGCGCTT
GCGCTGAATTGAGCGATGGTGATAGCCGTGAGAGATTTCTGCTGCAGCTG
TGGTACGCGCTGCTGGGAGGCCTCAGCGGGGCCGTCGGAGAGTTTCTCCC
GCTCGGAGTAGACGACAACCTCTCCATGCCAATAGTATCGGGAGGGGTGT
TCTTAACGTTGGTAGGTGCTTCGAGTTCGAGCCTCTAG
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