mRNA_C-linearis_contig8.15605.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI) HSP 1 Score: 294 bits (753), Expect = 1.410e-93 Identity = 164/300 (54.67%), Postives = 197/300 (65.67%), Query Frame = 3
Query: 30 ASVVTVLACVTIPVVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRC---------RGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDG---DSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
+SV VL CV +PV+ Y N+ T P TAQ VH RRR+QHA G+ + GYKW I DARTVV +LS++CA FLALH+LRRRLK+VD+LY+ L+GPLLRP EIRG LPG FWF++GS AVA+F +DVALQS+LHLS+GDPVASVVG++ G+ +R+LP GKSLAG+ AAF CS+STLLLF C R H D+D SS +FG FSAC + G L LW+ALLGG+SGAVGE LPLGVDDNLSMPIVSG FL L
Sbjct: 8 SSVAAVLVCVGLPVLFGYHNRQVETAP--------TAQSVHWRRRLQHATCGVAVTCGYKWVIRDARTVVAILSIACASFLALHRLRRRLKSVDKLYILLLGPLLRPQEIRGQLPGGFWFVVGSTAAVALFSKDVALQSILHLSLGDPVASVVGIKKGEGNRILPGGKSLAGSLAAFLACSLSTLLLFGCCCRPPGDEGRDSDHVGDSDLLSSL----------------------IFGHFSACTAVGRGGRDSGGSGTPLLLWFALLGGVSGAVGELLPLGVDDNLSMPIVSGLTFLAL 277
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A485LBM6_9STRA (Aste57867_18956 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBM6_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.100e-37 Identity = 93/249 (37.35%), Postives = 127/249 (51.00%), Query Frame = 3
Query: 135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQL--WYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
T Q +H+RR+VQHA SG+ + G +A + VV+VL S F + LR++ K V+ YL + GP+LR EI LPGAFWF+LGSA+++A F +DVA S+LHLS+GDP AS G+ LG S L +GK++AG F VC ++++ A L DG L +L GL+G +GE L LGVDDNLS+P+VSG
Sbjct: 62 TTQQLHIRRKVQHAGSGLLVVAGTFYA--SSVQVVIVLGCSAVAFYIITYLRKQYKVVNTTYLHVFGPILRQHEIAHRLPGAFWFLLGSALSLAFFSKDVAQLSILHLSLGDPCASFFGITLGHHSHKLANGKTIAGVVGCFVVCLLTSI------------------------------------------------AFLALVDGPVAHGTTLATKGLVMVLAGLAGTLGEALSLGVDDNLSLPLVSG 260
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A067D3P6_SAPPC (Phosphatidate cytidylyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D3P6_SAPPC) HSP 1 Score: 140 bits (353), Expect = 1.130e-34 Identity = 88/261 (33.72%), Postives = 136/261 (52.11%), Query Frame = 3
Query: 111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
RS T Q++HVRR+VQHA +G+ I + + A V+L++ F + +R++ KAVD +YL++ GP+LR E+ LPGAF+F++GSA++ ++P+ +A ++LHLS+GDP AS G+ LG S L +GK+LAG F VC +S++ H++ D S+ QL + G++GA+GE L +G DDNLSMP+ SG +F+TL
Sbjct: 52 RSNYSNVRTTQELHVRRKVQHAGTGVLIVVATFYG--SALEAAVILAICALTFYCVSFMRKQSKAVDAIYLQIFGPILRQHEVGHRLPGAFYFLMGSALSFVLYPKFIAQLAVLHLSLGDPCASFFGITLGQHSTKLWNGKTLAGVIGCFLVCLLSSVAFLTT--ATHDAITDLST--------------------------------------------FQQLLLMGMAGIAGAIGEVLNVGCDDNLSMPLFSG-LFMTL 263
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A024US71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US71_9STRA) HSP 1 Score: 139 bits (349), Expect = 4.430e-34 Identity = 90/249 (36.14%), Postives = 131/249 (52.61%), Query Frame = 3
Query: 135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGV 881
T Q++H+RR++QHA SG+ + +G +A + V +VL+ S A F + QLR++ K V+ YLR+ GP+LR EI LPGAFWF+LG ++ +FP+DVA S+LHLS+GDP AS+ G+ G + L +GK++AG VC ++++ S DTS H S G + C G +G +GE L +G DDNLS+P+VSGGV
Sbjct: 65 TTQELHIRRKIQHAGSGVLVVVGSFFA--SSLQVSIVLACSAAAFYIVAQLRQQYKVVNSTYLRVFGPILRQHEIAHRLPGAFWFLLGCCGSLLLFPKDVAQLSVLHLSLGDPCASLFGLTWGHHTSKLSNGKTIAGVVGCMFVCFVTSVGFL--------SVVDTSIQ-----------------HLSGIQRVGVMALC----------------------GAAGTLGEVLYVGCDDNLSLPLVSGGV 264
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A6G0XP90_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP90_9STRA) HSP 1 Score: 139 bits (349), Expect = 8.930e-34 Identity = 92/247 (37.25%), Postives = 126/247 (51.01%), Query Frame = 3
Query: 135 TAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
T + +H+RR+VQHA SG+ + L + + V VVL S AVF + QLR++ K V++ YL + GP+LR EI LPGAFWF+LG A ++ +FP++VA S+LHLS+GDP AS G+ LG S +P+GK+LAG F VC + + S DTS H G L + + +G +GE L LG DDNLS+PIVSG
Sbjct: 95 TTKQLHIRRKVQHAGSGLLVVLASFYG--SSVQVAVVLICSAAVFYVVTQLRKQSKVVNQTYLHVFGPILRQHEIAYRLPGAFWFLLGCAGSMLLFPKEVAQLSILHLSLGDPCASFFGITLGQNSPKMPNGKTLAGVIGCFVVCLLCNIGFL--------SIVDTS--IAHLG-------------------------------------LLEKALVVVSCAFAGTLGEALYLGCDDNLSLPIVSG 292
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A1W0ABA5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA5_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.170e-33 Identity = 90/261 (34.48%), Postives = 135/261 (51.72%), Query Frame = 3
Query: 111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSGGVFLTL 893
RS T Q++HVRR++QHA +G+ I + + + TVV L++ +F + RR+ KAVD +YL++ GP+LR E+ LPGAF+F+ GSA++ +P+ +A S+LHLS+GDP AS G+ LG + L +GK+LAG F VC +S++ F A LS +L Q+ G++GA+GE L +G DDNLSMPI+SG +F+T+
Sbjct: 52 RSSYTNVRTTQELHVRRKIQHAGTGVLIVIATFYGSSIEATVV--LAICALIFYGVSVARRQFKAVDTVYLQIFGPILRQHEVGHRLPGAFFFLTGSALSFVFYPKFIAQLSVLHLSLGDPCASFFGITLGHTTSKLWNGKTLAGVIGCFFVCLLSSIAFL---------------------------------------SFVVHHDIAHLS-------WLKQVLIMGTSGIAGAIGEVLNVGCDDNLSMPIISG-LFITI 263
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: W4H9K3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9K3_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.110e-32 Identity = 97/288 (33.68%), Postives = 150/288 (52.08%), Query Frame = 3
Query: 15 GTRTMASVVTVLACVTIP-VVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
GT ++A+VV ++A + + VV N+V T +++HVRR++QHA SG+ + +G +A ++ V VVL+ S F + QLR++ V++ YL + GP+LR EI LPGAFWF+LG ++++ IF +DVA S+LHLS+GDP AS G+ LG + L +GK++AG F VC +++ A S D A ++ E+ ++ L G++G VGE L +G DDNLS+P+VSG
Sbjct: 32 GTSSVAAVVFIVAILLLQFVVVRRPTHNTVR----------TTKELHVRRKIQHAGSGVLVVVGSFYA--NSLQVSVVLACSAVAFYIVAQLRKQNNIVNDTYLHVFGPILRQHEIAHRLPGAFWFLLGCSISLLIFKKDVAQLSVLHLSLGDPCASFFGLTLGHHTTKLANGKTIAGVAGCFVVCFATSV--------AFLSVVD-----------------------------------ASVAHVSGIEKAVVMA----LCGVAGTVGEVLYVGCDDNLSLPLVSG 260
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A1V9Z468_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z468_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.590e-31 Identity = 83/256 (32.42%), Postives = 134/256 (52.34%), Query Frame = 3
Query: 111 RSQPPRADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAV-FLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVSG 875
RS T Q++H+RR+VQHA +G I + + + +VV+ + CA+ F + +R++ KAVD +YL++ GP+LR E+ LPGAF+F+ GSA++ ++P+ +A S+LHLS+GDP AS G+ LG S L +GK++AG F VC +S+++ AH++ S + Q+ + G++GA+GE + +G DDNLSMP++SG
Sbjct: 54 RSNYSNVRTTQELHLRRKVQHAGTGALIVVATFYGTSLEASVVLAI---CALTFYFVSFMRKQSKAVDAIYLQIFGPILRQHEVHHRLPGAFYFLTGSALSFVVYPKFIAQLSVLHLSLGDPCASFFGITLGQHSTRLWNGKTVAGVIGCFLVCLLSSVVFVTL--AAHDAVKSFS--------------------------------------------VIKQMLFMAATGVAGAIGEVVNVGCDDNLSMPLLSG 260
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A2D4BUY6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY6_PYTIN) HSP 1 Score: 114 bits (284), Expect = 3.790e-25 Identity = 86/250 (34.40%), Postives = 125/250 (50.00%), Query Frame = 3
Query: 129 ADTAQDVHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCAVFLALHQLRRRLKAVDELYLRLMGPLLRPSEIRGA-LPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLG-DRSRVLPSGKSLAGTFAAFAVCSMSTLLLFRCRGCAHESDNDTSSSFFHRGGESDRGRYSNSNHWSSGSMFGDFSACAELSDGDSRERFLLQLWYALLGGLSGAVGEFLPLGVDDNLSMPIVS 872
A T Q +H++R++QHA +G I + DA V+VL AVF LH LR+R K VDE+YL LLR EIR +PGAF+F++G+ +A+FP +A ++LHLS+GDP AS+VG R+ + KSL G+ +CS+ ++L+ D+ +S F ERF+ + W A GL +V E + +GVDDNLSMP++S
Sbjct: 36 AVTRQXLHLQRKLQHALTGXMIFAASGFFTVDA--AVLVLFSCAAVFYVLHLLRKRFKRVDEVYLSCFHGLLRHDEIRKTVIPGAFYFLVGAGAVLALFPTPIARLAILHLSLGDPTASLVGTXXRYRRASSASTSKSLEGSLGCLVMCSVVSVLVIT---------RDSGTSEF--------------------------------------ERFV-RAWSA---GLCASVAERIHVGVDDNLSMPLLS 232
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Match: A0A7S3PZ99_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ99_9STRA) HSP 1 Score: 108 bits (269), Expect = 5.900e-23 Identity = 62/160 (38.75%), Postives = 93/160 (58.13%), Query Frame = 3
Query: 147 VHVRRRVQHAASGMGICLGYKWAITDARTVVVVLSLSCA-VFLALHQLRRRLKAVDELYLRLMGPLLRPSE-IRGALPGAFWFMLGSAVAVAIFPRDVALQSLLHLSVGDPVASVVGVRLGDRSRVLP-----SGKSLAGTFAAFAVCSMSTLLLFRCRG 605
+H RRR+QH +G+ + Y + V +L + C F ALH R + A+ +Y++ GPLLR E LPGAFWF+ G+ V V IFP D+A S+L LS GDP+A+++G+ +G V+ SGK+L+G+FA F +C L+ ++C G
Sbjct: 64 LHYRRRIQHVLTGL---IFYTLSFYLPFVVASLLLIICTGAFYALHFFRSKSNAIQNVYMKFFGPLLRDHEKCVFTLPGAFWFLFGTMVTVIIFPMDIARTSILCLSFGDPIAAIIGINVGGPGIVISTKRKSSGKTLSGSFACFCICY---LVSYKCMG 217 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15605.1 >prot_C-linearis_contig8.15605.1 ID=prot_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp MASVVTVLACVTIPVVCAYQNKNSVTGPRSQPPRADTAQDVHVRRRVQHAback to top mRNA from alignment at C-linearis_contig8:1784214..1786640- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15605.1 ID=mRNA_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2427bp|location=Sequence derived from alignment at C-linearis_contig8:1784214..1786640- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1784214..1786640- >mRNA_C-linearis_contig8.15605.1 ID=mRNA_C-linearis_contig8.15605.1|Name=mRNA_C-linearis_contig8.15605.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig8:1784214..1786640- (Chordaria linearis ClinC8C monoicous)back to top |