mRNA_C-linearis_contig8.15597.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15597.1
Unique NamemRNA_C-linearis_contig8.15597.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.950e-47
Identity = 91/138 (65.94%), Postives = 102/138 (73.91%), Query Frame = 1
Query:  394 PPGRGSRSISIY-------LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
            PPG G R  + +       L +FQ WA TMLRR  VHP D DAWR AFVDVEGS HGQLVVSAADETWRVI  W SRGRR DV+   IP+SLVDLQVR GVTSE+PR RQL+IA FG+RLVR+D +TEFG+T    SP
Sbjct:   73 PPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGSGHGQLVVSAADETWRVILCWGSRGRRIDVNQHSIPTSLVDLQVRAGVTSEDPRFRQLNIACFGHRLVRHDPVTEFGVTWTERSP 210          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.230e-46
Identity = 103/187 (55.08%), Postives = 116/187 (62.03%), Query Frame = 1
Query:  247 EQRLALPAGPAGWGDLQVVDCLWDRVQGPFAVPLLVRLPGAGTPVVQLAPPGRGSRSISIY-------LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
            +Q   LP    GW  L   +    R Q  F     +RLP       +L P G G R  + +       L +FQ WA TMLRR  VH  D DAWR AFVDVEG  HGQLVVSAADETWRVI  W SRGRR DV+  GIP+SLVDLQVR GV SE+PR RQL+IASFG+RLVRYD LTEFG+  K   P
Sbjct:   32 DQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLP-----FPRLCP-GPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAAFVDVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPTSLVDLQVRAGVISEDPRFRQLNIASFGHRLVRYDPLTEFGVIWKERLP 212          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.300e-42
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
            L NFQTW  T+L+RG VHP D +AWRTAFVDVEG   GQLVVSAADE+WRVI  W S GR  +VD QGIP SLV+LQV++GV S++P  RQL+IA+FG+R+VRY  +T FG
Sbjct:  107 LYNFQTWTRTVLQRGMVHPRDAEAWRTAFVDVEGGGLGQLVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVQSGVDSQSPFFRQLNIATFGHRVVRYAPITAFG 217          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.600e-39
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
            L +FQTWA  +L RG VHP D +AWRTAFVDVEG   GQLVVS+ADETWRVI  W S GRR DVD QGIP SL+ LQVR+GV S++P  RQL+IA+FG+R+VRY  +T FG
Sbjct:   86 LYSFQTWARMVLERGMVHPRDAEAWRTAFVDVEGGGQGQLVVSSADETWRVILCWASAGRRIDVDSQGIPFSLLSLQVRSGVDSQSPLFRQLNIATFGHRVVRYTPMTAFG 196          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.110e-39
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
            L+NFQ+WA    RRG VHP D DAW+TAF+DVEG   GQLVVSAAD+TWR I  W S GRR ++D +GIP+SL +LQVR G+ S +PR RQL+IASFG+R+VRY+ LT F +T K   P
Sbjct:   89 LENFQSWATRTWRRGLVHPRDADAWKTAFIDVEGGGRGQLVVSAADDTWRAILCWGSAGRRIEIDHEGIPASLSNLQVRAGIESSSPRFRQLNIASFGHRVVRYEPLTTFCMTWKKRLP 207          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KAJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.810e-39
Identity = 78/127 (61.42%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  406 GSRSISIYLQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
            G R   IY +     AG +     VHP D D WR  FV+VEG  HGQLVVSAADETWRVI  W SRGRR DV+  GIP+S VDLQV TGVTSE+P  RQL+ ASFG+RLV+YD LTEFG T K + P
Sbjct:   27 GPREGEIYRRQAVFGAGLL-----VHPCDADTWRATFVNVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPASPVDLQVCTGVTSEDPCFRQLNSASFGHRLVKYDPLTEFGSTWKESLP 148          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.280e-39
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEF 759
            L NF TWAGT+L+RG VHP D +AWRTAFVDVEG    QLVVSAAD+TW VI  W S GRR DVD QGIP SLV+LQVR+GV S++P  RQL+IA+FG+R+VRY  +T F
Sbjct:   66 LYNFHTWAGTVLQRGMVHPRDAEAWRTAFVDVEGGGLRQLVVSAADDTWLVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPLFRQLNIATFGHRVVRYAPITAF 175          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.310e-38
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
            L NFQTWA T+L+ G VHP D +AWRTAFV+VEG   GQLVVSAADE+WRVIF W S GR  +VD QGIP SLV+LQVR+G+ S++P  RQL+IA+FG+R+VRY  +T FG
Sbjct:   86 LYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRVIFCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFG 196          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.040e-36
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
            L NFQTWA T+L+ G VHP D +AWRTAFV+VEG   GQLVVSAADE+WRVI  W S GRR +VD  GIP SLV LQVR+G+ S++P  RQL+IA+FG+R+VRY  +T FG
Sbjct:   66 LYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRVILCWASAGRRIEVDT-GIPISLVSLQVRSGIDSQSPFFRQLNIATFGHRVVRYAPITAFG 175          
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5K932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K932_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.260e-36
Identity = 78/127 (61.42%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  406 GSRSISIYLQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
            G R   IY +     AG +     VHP D D WR  FV+VEG  HGQLVVSAADETWRVI  W SRGRR DV+  GIP+S VDLQV TGVTSE+P  RQL+ ASFG+RLV+YD LTEFG T K + P
Sbjct:   27 GPREGEIYRRQAVFGAGLL-----VHPCDADTWRATFVNVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPASPVDLQVCTGVTSEDPCFRQLNSASFGHRLVKYDPLTEFGSTWKESLP 148          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC4_9PHAE1.950e-4765.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI3.230e-4655.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JU52_9PHAE2.300e-4265.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.600e-3966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE2.110e-3961.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAJ8_9PHAE3.810e-3961.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE79_9PHAE5.280e-3967.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI1.310e-3865.77Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KMS8_9PHAE2.040e-3664.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K932_9PHAE2.260e-3661.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1714542..1715330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue7.1e-37
Seed eggNOG ortholog2880.D8LFQ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size789
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.0306108-UTR-C-linearis_contig8:1714541..17150001622930533.0306108-UTR-C-linearis_contig8:1714541..1715000Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1714542..1715000 +
1690881118.2250812-UTR-C-linearis_contig8:1714541..17150001690881118.2250812-UTR-C-linearis_contig8:1714541..1715000Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1714542..1715000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.0582085-CDS-C-linearis_contig8:1715000..17153301622930533.0582085-CDS-C-linearis_contig8:1715000..1715330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1715001..1715330 +
1690881118.2384908-CDS-C-linearis_contig8:1715000..17153301690881118.2384908-CDS-C-linearis_contig8:1715000..1715330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1715001..1715330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15597.1prot_C-linearis_contig8.15597.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1715001..1715330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15597.1

>prot_C-linearis_contig8.15597.1 ID=prot_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=110bp
MLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGR
RTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEF
GITCKGASPR
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mRNA from alignment at C-linearis_contig8:1714542..1715330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15597.1 ID=mRNA_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at C-linearis_contig8:1714542..1715330+ (Chordaria linearis ClinC8C monoicous)
CCCAACCCCCCTGTAAGCGCAGCTAGCTGCTCCCGTCCCAATCCCACTGC AAGCGCAGCTACTCCCGTCGCATGTGCGCTGTGGGCGCAAGACTTCCCAT GCTAGCGGGCCATTTTCTTCCAAATTGAATGTCGTCTCGCAGCGTTCAGA ACACAAACACACACACACACAACATACACACACACAAGAGTACCGGTGGT GGTGCTACGCCGAGCAGCTCGACCAGGCCGCGCCCCTGGCCGGCAGGAGC AACGGCTGGCGCTACCTGCTGGGCCCGCGGGATGGGGAGATCTACAGGTG GTAGACTGTCTTTGGGATCGGGTTCAGGGCCCGTTTGCCGTTCCTCTCCT CGTTAGACTCCCCGGGGCCGGGACACCGGTGGTTCAACTCGCACCCCCTG GGCGGGGATCCCGATCTATATCTATCTATCTCCAGAACTTTCAGACTTGG GCCGGGACGATGCTGCGCAGGGGCAGGGTGCACCCGCACGACACCGATGC CTGGCGGACGGCCTTCGTCGACGTCGAGGGCAGCCGGCACGGGCAGCTGG TCGTCTCCGCGGCCGACGAGACCTGGCGAGTGATCTTCTCCTGGACATCA CGGGGACGAAGGACCGACGTTGACCCGCAGGGCATCCCGTCATCTCTCGT CGACCTGCAGGTTCGCACCGGTGTCACGTCGGAGAACCCACGCTCCAGAC AACTCAGTATCGCATCCTTTGGTAATCGGCTCGTGAGATACGATCTCCTG ACTGAGTTTGGAATTACTTGCAAAGGAGCGTCTCCCAGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1714542..1715330+

>mRNA_C-linearis_contig8.15597.1 ID=mRNA_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at C-linearis_contig8:1714542..1715330+ (Chordaria linearis ClinC8C monoicous)
ATGCTGCGCAGGGGCAGGGTGCACCCGCACGACACCGATGCCTGGCGGAC
GGCCTTCGTCGACGTCGAGGGCAGCCGGCACGGGCAGCTGGTCGTCTCCG
CGGCCGACGAGACCTGGCGAGTGATCTTCTCCTGGACATCACGGGGACGA
AGGACCGACGTTGACCCGCAGGGCATCCCGTCATCTCTCGTCGACCTGCA
GGTTCGCACCGGTGTCACGTCGGAGAACCCACGCTCCAGACAACTCAGTA
TCGCATCCTTTGGTAATCGGCTCGTGAGATACGATCTCCTGACTGAGTTT
GGAATTACTTGCAAAGGAGCGTCTCCCAGGATGCTGCGCAGGGGCAGGGT
GCACCCGCACGACACCGATGCCTGGCGGACGGCCTTCGTCGACGTCGAGG
GCAGCCGGCACGGGCAGCTGGTCGTCTCCGCGGCCGACGAGACCTGGCGA
GTGATCTTCTCCTGGACATCACGGGGACGAAGGACCGACGTTGACCCGCA
GGGCATCCCGTCATCTCTCGTCGACCTGCAGGTTCGCACCGGTGTCACGT
CGGAGAACCCACGCTCCAGACAACTCAGTATCGCATCCTTTGGTAATCGG
CTCGTGAGATACGATCTCCTGACTGAGTTTGGAATTACTTGCAAAGGAGC
GTCTCCCAGG
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