mRNA_C-linearis_contig8.15597.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.950e-47 Identity = 91/138 (65.94%), Postives = 102/138 (73.91%), Query Frame = 1
Query: 394 PPGRGSRSISIY-------LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
PPG G R + + L +FQ WA TMLRR VHP D DAWR AFVDVEGS HGQLVVSAADETWRVI W SRGRR DV+ IP+SLVDLQVR GVTSE+PR RQL+IA FG+RLVR+D +TEFG+T SP
Sbjct: 73 PPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAFVDVEGSGHGQLVVSAADETWRVILCWGSRGRRIDVNQHSIPTSLVDLQVRAGVTSEDPRFRQLNIACFGHRLVRHDPVTEFGVTWTERSP 210
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI) HSP 1 Score: 175 bits (444), Expect = 3.230e-46 Identity = 103/187 (55.08%), Postives = 116/187 (62.03%), Query Frame = 1
Query: 247 EQRLALPAGPAGWGDLQVVDCLWDRVQGPFAVPLLVRLPGAGTPVVQLAPPGRGSRSISIY-------LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
+Q LP GW L + R Q F +RLP +L P G G R + + L +FQ WA TMLRR VH D DAWR AFVDVEG HGQLVVSAADETWRVI W SRGRR DV+ GIP+SLVDLQVR GV SE+PR RQL+IASFG+RLVRYD LTEFG+ K P
Sbjct: 32 DQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLP-----FPRLCP-GPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAAFVDVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPTSLVDLQVRAGVISEDPRFRQLNIASFGHRLVRYDPLTEFGVIWKERLP 212
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.300e-42 Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
L NFQTW T+L+RG VHP D +AWRTAFVDVEG GQLVVSAADE+WRVI W S GR +VD QGIP SLV+LQV++GV S++P RQL+IA+FG+R+VRY +T FG
Sbjct: 107 LYNFQTWTRTVLQRGMVHPRDAEAWRTAFVDVEGGGLGQLVVSAADESWRVILCWASAGREIEVDTQGIPISLVNLQVQSGVDSQSPFFRQLNIATFGHRVVRYAPITAFG 217
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.600e-39 Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
L +FQTWA +L RG VHP D +AWRTAFVDVEG GQLVVS+ADETWRVI W S GRR DVD QGIP SL+ LQVR+GV S++P RQL+IA+FG+R+VRY +T FG
Sbjct: 86 LYSFQTWARMVLERGMVHPRDAEAWRTAFVDVEGGGQGQLVVSSADETWRVILCWASAGRRIDVDSQGIPFSLLSLQVRSGVDSQSPLFRQLNIATFGHRVVRYTPMTAFG 196
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.110e-39 Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
L+NFQ+WA RRG VHP D DAW+TAF+DVEG GQLVVSAAD+TWR I W S GRR ++D +GIP+SL +LQVR G+ S +PR RQL+IASFG+R+VRY+ LT F +T K P
Sbjct: 89 LENFQSWATRTWRRGLVHPRDADAWKTAFIDVEGGGRGQLVVSAADDTWRAILCWGSAGRRIEIDHEGIPASLSNLQVRAGIESSSPRFRQLNIASFGHRVVRYEPLTTFCMTWKKRLP 207
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KAJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ8_9PHAE) HSP 1 Score: 147 bits (370), Expect = 3.810e-39 Identity = 78/127 (61.42%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 406 GSRSISIYLQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
G R IY + AG + VHP D D WR FV+VEG HGQLVVSAADETWRVI W SRGRR DV+ GIP+S VDLQV TGVTSE+P RQL+ ASFG+RLV+YD LTEFG T K + P
Sbjct: 27 GPREGEIYRRQAVFGAGLL-----VHPCDADTWRATFVNVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPASPVDLQVCTGVTSEDPCFRQLNSASFGHRLVKYDPLTEFGSTWKESLP 148
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KE79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE79_9PHAE) HSP 1 Score: 154 bits (388), Expect = 5.280e-39 Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEF 759
L NF TWAGT+L+RG VHP D +AWRTAFVDVEG QLVVSAAD+TW VI W S GRR DVD QGIP SLV+LQVR+GV S++P RQL+IA+FG+R+VRY +T F
Sbjct: 66 LYNFHTWAGTVLQRGMVHPRDAEAWRTAFVDVEGGGLRQLVVSAADDTWLVILCWASAGRRIDVDTQGIPISLVNLQVRSGVDSQSPLFRQLNIATFGHRVVRYAPITAF 175
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI) HSP 1 Score: 153 bits (387), Expect = 1.310e-38 Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
L NFQTWA T+L+ G VHP D +AWRTAFV+VEG GQLVVSAADE+WRVIF W S GR +VD QGIP SLV+LQVR+G+ S++P RQL+IA+FG+R+VRY +T FG
Sbjct: 86 LYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRVIFCWASAGREIEVDTQGIPISLVNLQVRSGLDSQSPFFRQLNIATFGHRVVRYAPITAFG 196
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.040e-36 Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 430 LQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFG 762
L NFQTWA T+L+ G VHP D +AWRTAFV+VEG GQLVVSAADE+WRVI W S GRR +VD GIP SLV LQVR+G+ S++P RQL+IA+FG+R+VRY +T FG
Sbjct: 66 LYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEGGGLGQLVVSAADESWRVILCWASAGRRIEVDT-GIPISLVSLQVRSGIDSQSPFFRQLNIATFGHRVVRYAPITAFG 175
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Match: A0A6H5K932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K932_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.260e-36 Identity = 78/127 (61.42%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 406 GSRSISIYLQNFQTWAGTMLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRRTDVDPQGIPSSLVDLQVRTGVTSENPRSRQLSIASFGNRLVRYDLLTEFGITCKGASP 786
G R IY + AG + VHP D D WR FV+VEG HGQLVVSAADETWRVI W SRGRR DV+ GIP+S VDLQV TGVTSE+P RQL+ ASFG+RLV+YD LTEFG T K + P
Sbjct: 27 GPREGEIYRRQAVFGAGLL-----VHPCDADTWRATFVNVEGGGHGQLVVSAADETWRVILCWGSRGRRIDVNQHGIPASPVDLQVCTGVTSEDPCFRQLNSASFGHRLVKYDPLTEFGSTWKESLP 148 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15597.1 >prot_C-linearis_contig8.15597.1 ID=prot_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=110bp MLRRGRVHPHDTDAWRTAFVDVEGSRHGQLVVSAADETWRVIFSWTSRGRback to top mRNA from alignment at C-linearis_contig8:1714542..1715330+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15597.1 ID=mRNA_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at C-linearis_contig8:1714542..1715330+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1714542..1715330+ >mRNA_C-linearis_contig8.15597.1 ID=mRNA_C-linearis_contig8.15597.1|Name=mRNA_C-linearis_contig8.15597.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at C-linearis_contig8:1714542..1715330+ (Chordaria linearis ClinC8C monoicous)back to top |