mRNA_C-linearis_contig8.15595.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI) HSP 1 Score: 320 bits (819), Expect = 2.870e-106 Identity = 162/260 (62.31%), Postives = 191/260 (73.46%), Query Frame = 1
Query: 1 DDESMMSVAAAAVVAASSLQNMMHAFDPD-------QEDDLEPDGLFGEMEEEEEEREKQIRRSYPRPDYWESTWGQWLRKLRELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVTDEVGGRG 759
+ E+M++ AAAAV +L M D + QE D E L + EE +E+Q RRSY RPDY S W RDVAGR CPP+ELK YPGAENDKT+I+RDKS+WRIRDE+PWKS+KYKL N DGTETEY GAW+IVDGGYPKIPLL+PPIKTHN+I+ H SRR+ES+RKDIECCFGRVKGRWRLF G I F REK+DNAW TACILHNMLH+++GLD+M+EDADWVGSAG LG + + G G
Sbjct: 5 ESEAMIAAAAAAVAHVQNLTQEMDCGDEEFGFDGFAQEADGEASWLGDD--EEXXXKERQTRRSYARPDYDASAWA---------VRDVAGRRCPPLELKCYPGAENDKTIISRDKSVWRIRDEEPWKSMKYKLRNADGTETEYTGAWLIVDGGYPKIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGELGDMPQQPVGMG 253
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE) HSP 1 Score: 276 bits (707), Expect = 3.870e-89 Identity = 130/170 (76.47%), Postives = 142/170 (83.53%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E T D +GR K+YPGAENDKTVIAR K IWRIRDE+PWKS K+KLYN DGTETE GAWIIVDGGYPKIPLLIPPIKTHNT++EH WSRRLESMRKDIECCFGRVKG WRLFGG ILF R KVDNAWFTACILHNMLH ++ LD+M+EDADW+GSA L + T
Sbjct: 94 ECTCDHSGRIIAAT--KTYPGAENDKTVIARGKFIWRIRDEEPWKSYKFKLYNADGTETECTGAWIIVDGGYPKIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT 261
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.150e-80 Identity = 118/167 (70.66%), Postives = 131/167 (78.44%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLG 729
E T D GR KSYPG+ENDKT+I RDKSIWRIRDE+PW SLKYKLYN DG+ETEY GAW++VDGGY KIPLLIPPIK H T++EHDWSRRLESMRKDIECC+GRVKGR+RLF IL+ R+ +DN WFTACILHNMLH Y LD M E W GSA LG
Sbjct: 83 EATCDHTGRIIAAT--KSYPGSENDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQGSARPLG 247
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE) HSP 1 Score: 247 bits (631), Expect = 8.900e-76 Identity = 121/169 (71.60%), Postives = 132/169 (78.11%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKV 735
E D +GR K+ PGAENDKTVIARDKSIWRIRDE+PWKS Y AWIIVDGGYPKIPLLIPPIKTHNT++EHDWSRRLESMRKDIECCFGRVKGRWRLFGG ILF R+K DNA FTACILHNMLH ++ LD+M+EDADWVGSAG LG+
Sbjct: 159 ECACDHSGRIIAAT--KTCPGAENDKTVIARDKSIWRIRDEEPWKSY-------------YTRAWIIVDGGYPKIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGEA 312
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.930e-75 Identity = 123/198 (62.12%), Postives = 135/198 (68.18%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPK----------------------------IPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E T D +GR K+YPGAENDKTVIARDKSIWRIRDE+PWKS Y AWIIVDGGYPK IPLLIPPIKTHNT++EHDWSRRLESMRKDIECCFGRVKGRWRLFGG +LF R+KVDNAWFTACILHNMLH ++ LD+M+ED WVGSAG LG+ T
Sbjct: 72 ECTCDHSGRIIAAT--KTYPGAENDKTVIARDKSIWRIRDEEPWKSY-------------YTRAWIIVDGGYPKSLETDHVVSTQVRIKPTPDSHFRSAVSHIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT 254
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5K4F4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F4_9PHAE) HSP 1 Score: 233 bits (594), Expect = 4.960e-72 Identity = 114/170 (67.06%), Postives = 126/170 (74.12%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E T D +GR K+YPGAENDK VIARDKSIWR+RDEDPWKS K+KLYN DGTETEY GAWIIVDGGYPKIPLLIPPIKTHNT++EH+WSRRLESMRKDIECCFGRVKGRW LF G I F++ LD+M+EDADWVGS G LG+ T
Sbjct: 112 ECTCDHSGRIIAAT--KTYPGAENDKKVIARDKSIWRVRDEDPWKSYKFKLYNADGTETEYTGAWIIVDGGYPKIPLLIPPIKTHNTVEEHNWSRRLESMRKDIECCFGRVKGRWMLFSGDIFFNR-----------------------LDEMEEDADWVGSGGRLGEAT 256
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5KCK8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK8_9PHAE) HSP 1 Score: 229 bits (584), Expect = 6.550e-70 Identity = 122/218 (55.96%), Postives = 139/218 (63.76%), Query Frame = 1
Query: 199 TWGQWLRKLRELTRDVAGRECPPVEL----KSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPK--------------IPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFG--------------------GLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
TW + K ++ V EC + K+YPGAENDKTVIARDKSIWRIRDE+PWKS + AWIIVDGGYPK IPLLIPPIKTHNT++EHDWSRRL++MRKDIECCFGRVKGRWRLFG G ILF R+KVDNAWFTACILHNMLH ++ LD+M+ED WVGSAG LG+ T
Sbjct: 45 TWNTYTGKEGHMSLVV---ECHSGRIIAATKTYPGAENDKTVIARDKSIWRIRDEEPWKSYDTR-------------AWIIVDGGYPKASFGCCHFRSAVSQIPLLIPPIKTHNTVKEHDWSRRLDNMRKDIECCFGRVKGRWRLFGVPVGNNAFSQRXXXXXXXXXGDILFSARQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT 246
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.990e-57 Identity = 90/170 (52.94%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E D AGR K YPGAENDKTV+ RD S+ R+ E+PW S KY++Y++ G TE+ G W+I +GGY ++PLLI P K + + E WS+RLES+RKDIEC FGR+KGR+RLF ILF R K+D+AWFTACI+HNML + GLD+++ D DW G G T
Sbjct: 83 EAICDHAGRIL--ASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIAEGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTT 250
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.310e-56 Identity = 89/170 (52.35%), Postives = 121/170 (71.18%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E + D +GR K +PGAENDKTV+ RD S+ R+R+E+PW S K+ L++ +G TE+ G W+IVDGGY ++P LI P K + + + +WS+R ES+RKDIEC FGR+KGR+RLF ILF REK+DNAWFTACI+HNMLH++ GL +++D DW G G + T
Sbjct: 217 EASCDHSGRILSST--KGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTT 384
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE) HSP 1 Score: 196 bits (499), Expect = 2.080e-55 Identity = 91/170 (53.53%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 229 ELTRDVAGRECPPVELKSYPGAENDKTVIARDKSIWRIRDEDPWKSLKYKLYNDDGTETEYAGAWIIVDGGYPKIPLLIPPIKTHNTIQEHDWSRRLESMRKDIECCFGRVKGRWRLFGGLILFDKREKVDNAWFTACILHNMLHRYHGLDKMDEDADWVGSAGGLGKVT 738
E D AGR K YPGAENDKTV+ RD S+ R+ E+PW S KY++Y++ G TE+ G W+I DGGY ++PLLI P K + + E WS+RLES+RKDIEC FGR+KGR+RLF ILF R K+D+AWFTACI+HNML + GLD+++ D DW G G T
Sbjct: 315 EAICDHAGRIL--ASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTGGWLIADGGYHRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTT 482 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15595.1 >prot_C-linearis_contig8.15595.1 ID=prot_C-linearis_contig8.15595.1|Name=mRNA_C-linearis_contig8.15595.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=285bp MMSVAAAAVVAASSLQNMMHAFDPDQEDDLEPDGLFGEMEEEEEEREKQIback to top mRNA from alignment at C-linearis_contig8:1680287..1690131- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15595.1 ID=mRNA_C-linearis_contig8.15595.1|Name=mRNA_C-linearis_contig8.15595.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9845bp|location=Sequence derived from alignment at C-linearis_contig8:1680287..1690131- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1680287..1690131- >mRNA_C-linearis_contig8.15595.1 ID=mRNA_C-linearis_contig8.15595.1|Name=mRNA_C-linearis_contig8.15595.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at C-linearis_contig8:1680287..1690131- (Chordaria linearis ClinC8C monoicous)back to top |