mRNA_C-linearis_contig8.15576.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15576.1
Unique NamemRNA_C-linearis_contig8.15576.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1507410..1510362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1320
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15576.1prot_C-linearis_contig8.15576.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1507594..1509979 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.9610019-UTR-C-linearis_contig8:1507409..15075931622930501.9610019-UTR-C-linearis_contig8:1507409..1507593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1507410..1507593 -
1690881102.5536795-UTR-C-linearis_contig8:1507409..15075931690881102.5536795-UTR-C-linearis_contig8:1507409..1507593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1507410..1507593 -
1622930502.046157-UTR-C-linearis_contig8:1509979..15103621622930502.046157-UTR-C-linearis_contig8:1509979..1510362Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1509980..1510362 -
1690881102.6026576-UTR-C-linearis_contig8:1509979..15103621690881102.6026576-UTR-C-linearis_contig8:1509979..1510362Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1509980..1510362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930501.9825075-CDS-C-linearis_contig8:1507593..15076801622930501.9825075-CDS-C-linearis_contig8:1507593..1507680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1507594..1507680 -
1690881102.5720565-CDS-C-linearis_contig8:1507593..15076801690881102.5720565-CDS-C-linearis_contig8:1507593..1507680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1507594..1507680 -
1622930502.0052593-CDS-C-linearis_contig8:1507786..15083071622930502.0052593-CDS-C-linearis_contig8:1507786..1508307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1507787..1508307 -
1690881102.5823755-CDS-C-linearis_contig8:1507786..15083071690881102.5823755-CDS-C-linearis_contig8:1507786..1508307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1507787..1508307 -
1622930502.0283432-CDS-C-linearis_contig8:1509834..15099791622930502.0283432-CDS-C-linearis_contig8:1509834..1509979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1509835..1509979 -
1690881102.5910451-CDS-C-linearis_contig8:1509834..15099791690881102.5910451-CDS-C-linearis_contig8:1509834..1509979Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1509835..1509979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15576.1

>prot_C-linearis_contig8.15576.1 ID=prot_C-linearis_contig8.15576.1|Name=mRNA_C-linearis_contig8.15576.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp
MSSTNHWGTQFSSNVSVYAFRGQWIAGLETTMSRHFQDQQQQQQWQRGRQ
LARTSGDHRRHSCPDLLRVPRGGGEGTNTTASHALAVGDGDGAGVVDSVQ
FSQMGEVSEMTKAAATFLTNGGVAVNAGLVEEEAEGWQSISCQSRSHDSD
RSGEHCSDASGSSENDVAETVYTTSGSSSGSSPSGGTLCLVPSSATREAP
CKGGSQEQGDQETSPSVGNGSSPPPPPPPLRRLRPPAPPRLHLSSPGALG
*
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mRNA from alignment at C-linearis_contig8:1507410..1510362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15576.1 ID=mRNA_C-linearis_contig8.15576.1|Name=mRNA_C-linearis_contig8.15576.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2953bp|location=Sequence derived from alignment at C-linearis_contig8:1507410..1510362- (Chordaria linearis ClinC8C monoicous)
CCACACCGCAGAACACTGTCAACGACTTCATTGTTGGAGCTATACACTCA
GACGCACTCGACCGGAGTGAAGCACTCGTTCGTTCGAACTGGAAACGTGA
AGCGGAGGAGACTGGGAAGGTTGCACCCGTCCGCAAAAAAGTTCTGCCCC
TCCCTTCGGAACGGCTTTCGACGCATGACGTCATCATGCTCATGCTCGGC
ATGAACGGCGGTCCCAAGGGGGTATACATATAACCAATTGAATTTCCCTT
CACGTGAACGTCTCGCCATTGTCAAAGGGGTCACTCGTTCATCGGCTTTG
AGCTATCGCGAAGTGTTCACTTGCACCCAACAACCGTTCCGTTTACTGTA
ACCAGCCGCCCTTGGCCGGGGTCTCTTCGCGGCATGTCGAGCACAAACCA
CTGGGGAACACAATTTTCGAGCAACGTGAGCGTGTACGCGTTTCGAGGGC
AGTGGATCGCAGGGCTGGAGACGACCATGTCGCGGCATTTCCAGGATCAG
CAGCAGCAGCAGCAGTGGCAGAGAGGAAGTGAGTTGGGAGGGAAAAGGGA
GGGCGGGGCGCGAGTATGCATAGGGTTTGAAATGCTGTGATGATGTGAAG
AGGGCTCTCTTTCGCGTTTGTTTGCTCCCTTCCCCTCTCGGCTCTTTCCC
CTCACTTACCATACAGCAGGGGAGCTGTTGTTCAAAACACTTGGCAGCTA
GATCCCGATTGTTCCAGCATGGTTTTCGGCGTGGGTGACCACAGCGGTAT
GGCGGCAAACAAAGGGAAAGAGCTTGGGATATTGTTTTGGGAGTTTGCGG
GTGCAAGGCGGAGGGGAAAGTTGCACAACGTCAAGCTTCTAGACCGAACC
TCGTCGTGTTCGGCGCGTTCTCGTGTGTGAACGGCCCCTGCACACCTGGG
TAGAAGTGTCGCAAACCCGACACCTAGATCACCACGTGTGCGCCTGTCGA
GCCATGTGCAACGCGCGCTGCACATGTGCACTCACCGATAGGTATGCACG
ACGTTCTCGAGCGAAAGAACAAACCCCACCCCGCGCCTCCATTTAAGTCC
ATTCGTCACACATGGTTATGAGGGAGGCGGTCCCAAAGATAGGCGAAGAC
ACGAACGAGCTACGATCGTTACCTCTCCTTCTCTACAACACAAGAGCTCT
GTCCAACACAAACAGAACCGGATTTGTTTTAGAAGCTAACGGCAAAAAAC
ACGACCAACCATTGAAAGAGGCACACCCCCGTAAACGTGAGCGTTCACAA
ATGGTATGCGCGTGTCTTCTTCTCGTCTACTTTCCTCGGCGGTTTTCCGT
GCCTCTGGTTTTACCGGTGTGCATATCTCTTTATATACTTTCGTTTCGCC
TTTCGATAATGCCAGGAGCGGATGCTTTTACTCCGAAAGCAAAAGCCAAC
GTTGTTTTCCCCCAACAGAAAGCAACAAACAGACCACAGCCAGCCGCCTG
GTTTCTTCAAGTTGACGGTTTGACATACGTCGCTGGGTGCAGAAGATGTA
CACACATATCATATGTACACAGTAGATAGGTTGCTATTCTAATATCACTC
GATTATGTTATGCGTGCTACATGTCGTACAGAACCCAACTCAAGATCGCG
TCTTGTAGCCACAGAGGTGTTCGTTGGGAGTGTAAATTCCAGCGCCGGTT
CTGCGCGTCTTTTTTTTTCAATACTCCTACTTCTATATTGCTTTGAAATA
CTCCCATCTTTGCGTCAGCGACAGAGAACCGCGGCCCGCCCGTCAAATAG
AGCGCTGGGTACGTTCATAGCGTTAAATGTTCTTTGCGGCTCAAATCTTG
ACGTTTGTCTTCCTTGCTCTCTGCGTTCCCGAATACCAACAGTTGTTCAG
GAAAGTACAGAGCATGCTTTGGACCACCAAGAGCCCTTAAGGGGATGAAA
ACGAAAAGCATTATTGTACGTAGCCATTGTGAAGCCGAAAACTAAAAACG
ATGCAATAACTCTCAAACCTTACGCAACAATACCGTCTCCCCGAAACTAG
AAAACAAAATCTACTGGTATGTTCTAACGACACCTCGCCCTTAAATTTCC
TCCAGGGCAGCTTGCGCGGACGTCTGGTGACCATCGCCGCCACTCGTGCC
CTGACCTGCTGCGTGTGCCCCGCGGCGGTGGTGAGGGCACCAACACGACG
GCATCCCACGCGCTAGCCGTTGGCGATGGCGATGGCGCCGGTGTCGTCGA
TTCCGTGCAGTTTTCACAAATGGGCGAGGTGTCCGAGATGACCAAGGCGG
CGGCTACGTTTCTCACGAACGGTGGTGTTGCCGTCAACGCTGGGCTTGTG
GAAGAAGAAGCAGAAGGGTGGCAGTCCATCAGCTGCCAAAGCCGCAGCCA
CGATAGCGACAGGTCCGGAGAACACTGCTCCGACGCGTCCGGCAGCTCCG
AGAACGATGTCGCAGAAACCGTGTACACGACGAGCGGCAGCAGCAGCGGC
AGCAGCCCCTCTGGCGGAACGCTTTGCTTGGTGCCCTCCTCAGCAACAAG
GGAAGCGCCGTGCAAGGGTGGCAGCCAAGAACAAGGAGACCAGGAAACGT
CGCCCAGCGTTGGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGGGCTGCCGAAACCTGTGCATTGTCGGTGTGTTCGTCCTC
TTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCCCCCCCT
CCTCTTCGTCGTCTTCGTCCTCCTGCACCTCCTCGTCTTCATCTTTCTTC
GCCGGGGGCACTGGGGTGAGCGGCGTACACATAAACGACCTGAAAGAACC
TCTCGAAGTCGACCAGACCGCGACGGCGATCGAGCCCGTGTCTCCGTCGG
GGGAGGCGTCGTCGGCATCTTCTTTGTCGGAGGACACCACCTGCAGCCAG
ACCGAAACGCGTCGACCTGGTCGAGGTCGCAGGCCCTCTAGCCTGCTGGA
GGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:1507410..1510362-

>mRNA_C-linearis_contig8.15576.1 ID=mRNA_C-linearis_contig8.15576.1|Name=mRNA_C-linearis_contig8.15576.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig8:1507410..1510362- (Chordaria linearis ClinC8C monoicous)
ATGTCGAGCACAAACCACTGGGGAACACAATTTTCGAGCAACGTGAGCGT
GTACGCGTTTCGAGGGCAGTGGATCGCAGGGCTGGAGACGACCATGTCGC
GGCATTTCCAGGATCAGCAGCAGCAGCAGCAGTGGCAGAGAGGAAATGTC
GAGCACAAACCACTGGGGAACACAATTTTCGAGCAACGTGAGCGTGTACG
CGTTTCGAGGGCAGTGGATCGCAGGGCTGGAGACGACCATGTCGCGGCAT
TTCCAGGATCAGCAGCAGCAGCAGCAGTGGCAGAGAGGAAGGCAGCTTGC
GCGGACGTCTGGTGACCATCGCCGCCACTCGTGCCCTGACCTGCTGCGTG
TGCCCCGCGGCGGTGGTGAGGGCACCAACACGACGGCATCCCACGCGCTA
GCCGTTGGCGATGGCGATGGCGCCGGTGTCGTCGATTCCGTGCAGTTTTC
ACAAATGGGCGAGGTGTCCGAGATGACCAAGGCGGCGGCTACGTTTCTCA
CGAACGGTGGTGTTGCCGTCAACGCTGGGCTTGTGGAAGAAGAAGCAGAA
GGGTGGCAGTCCATCAGCTGCCAAAGCCGCAGCCACGATAGCGACAGGTC
CGGAGAACACTGCTCCGACGCGTCCGGCAGCTCCGAGAACGATGTCGCAG
AAACCGTGTACACGACGAGCGGCAGCAGCAGCGGCAGCAGCCCCTCTGGC
GGAACGCTTTGCTTGGTGCCCTCCTCAGCAACAAGGGAAGCGCCGTGCAA
GGGTGGCAGCCAAGAACAAGGAGACCAGGAAACGTCGCCCAGCGTTGGCA
ACGGCAGCAGCGGCAGCTTGCGCGGACGTCTGGTGACCATCGCCGCCACT
CGTGCCCTGACCTGCTGCGTGTGCCCCGCGGCGGTGGTGAGGGCACCAAC
ACGACGGCATCCCACGCGCTAGCCGTTGGCGATGGCGATGGCGCCGGTGT
CGTCGATTCCGTGCAGTTTTCACAAATGGGCGAGGTGTCCGAGATGACCA
AGGCGGCGGCTACGTTTCTCACGAACGGTGGTGTTGCCGTCAACGCTGGG
CTTGTGGAAGAAGAAGCAGAAGGGTGGCAGTCCATCAGCTGCCAAAGCCG
CAGCCACGATAGCGACAGGTCCGGAGAACACTGCTCCGACGCGTCCGGCA
GCTCCGAGAACGATGTCGCAGAAACCGTGTACACGACGAGCGGCAGCAGC
AGCGGCAGCAGCCCCTCTGGCGGAACGCTTTGCTTGGTGCCCTCCTCAGC
AACAAGGGAAGCGCCGTGCAAGGGTGGCAGCCAAGAACAAGGAGACCAGG
AAACGTCGCCCAGCGTTGGCAACGGCAGCAGCCCTCCTCCTCCCCCCCCT
CCTCTTCGTCGTCTTCGTCCTCCTGCACCTCCTCGTCTTCATCTTTCTTC
GCCGGGGGCACTGGGGTGACCTCCTCCTCCCCCCCCTCCTCTTCGTCGTC
TTCGTCCTCCTGCACCTCCTCGTCTTCATCTTTCTTCGCCGGGGGCACTG
GGGTGA
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