mRNA_C-linearis_contig8.15540.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15540.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 580 bits (1495), Expect = 5.460e-187 Identity = 470/876 (53.65%), Postives = 548/876 (62.56%), Query Frame = 3
Query: 558 CVY---YNVHTYQQSILTQMGALIASAHAQSNLHARAISAQEIVNHLKSAIKRMNVRLIELRG--ERKIEYNTVVMSKLIHTQNKIITDELG-KLGISVTSLKPTLDLERELKKRSDAAYLAVKNKVDKAKRSEAEKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRSAPAAAMAVETEDVKPVVAT---LAPT------------LAQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLVMXXXXXXXXXXXXXXVAPAAAVQTPQAPVYGVQALGAA--------------APPASSVGVAAQVCLVCTAYAYAPQQAAAAVTQAAPYVKPKVHTDVDPKSGLQKLPSDKLDTAKKEVEYITPADALAEEERRLRQA-NEQVAAQRKPSRPWFTTNVVDHRHAWCSLRDAGERAGMRRVLKQRPWGNPEDPLGGGKEAAGSDVLELMSSAAQHYLKELLNDLKVIAWQRKGGLSTDLLAGIASRLQDPSVQAPSPKAELRRGLVPKLPPVADLPRVLLEEEEGAHRRQCEEREARWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSREQLAASEFARRVAIKHGIGVVAALMKKKELATKEASSAANAESAEAAGDADG---DDPMGLADRRPTAGGIRGXXXXXXXXXXXXXALSAGGGLKRPLDPLADENDALETVRIIRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPXXDGAAANGLAVAQTAGGGDGAVAKANGERGAARVQISNADLAELLGSTKPKGDPRRWAKVLYRAQNSRQGVHA 3068
C+Y + + +SIL++MG LIA+A+A++N ++ Q +V+HLK+A+KRMNVRLIELR KIEYNT +MSKLI+TQNKIITDEL KLG+++TSL P LDLE ELKKRSD AYLAVKNKVD+AKRSEA KAA XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX AA+ V+ EDVKP V T AP LA Q XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX VA Q Q PVYG QA GAA AP A TA+A A Y KPKV+ DVDP++GLQKLP+DKLD+AKK+VE+I +D +AEEE RLR + V ++ P+ WF TNVVDHRHAWC LRDAGE+AGMRRVLK+RPWGNP +PL GGKEAAGSDVL+LMS AAQ+YLK +L++L V+A+QRKGGLS +LL+G+ SRL+DPSV+ PKAELR+ LVP+LP V +LPRV+LE+ E AHR++CEERE RWD ELADTL TAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLS+EQLA SEFARRVA+KHGIGVVAALMKKKELA+ DDPM ++DR T G + G GLKRPLDPLA + DA+ETVR IRRR G G+G+ + E A ++I+NADLAELL STKP+GDPR+WA+VL RAQNSR+GVHA
Sbjct: 2 CLYSGEFPLDDCSKSILSEMGTLIAAANAKANPGGVNVAPQRVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAAIKAASANPGXXXXXXXXXXXXXXXXXXXXXXXXXXPQVVAMPXXXXXXX-----PAAVPVKMEDVKPTVVTKPMAAPAAATSHHVVQQAHLAPQQQAVVAPQPVAPAQVKLPPTSVAVAGTASAPLVIGASPDSTPVAAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVA-----QHSQTPVYGGQAPGAAXXXXXXXXXXXXRAAPQAP------------TAHAPAXXXXXXXXXXXPAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRDPSVK--DPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXXDDPMDVSDRAITGDSSSGGRSSKDSKGKAGNKRAPGTGLKRPLDPLASD-DAVETVRNIRRRLVLGAPDHGDDDDDI-------------------------------GSGEGSTPPS--EEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_C-linearis_contig8.15540.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 544 bits (1402), Expect = 5.710e-176 Identity = 383/847 (45.22%), Postives = 448/847 (52.89%), Query Frame = 3
Query: 606 MGALIASAHAQSNLHARAISAQEIVNHLKSAIKRMNVRLIELRG--ERKIEYNTVVMSKLIHTQNKIITDELG-KLGISVTSLKPTLDLERELKKRSDAAYLAVKNKVDKAKRSEAEKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRSAPAAAMAVETEDVKPVVATLAPTLAQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLVMXXXXXXXXXXXXXXVAPAAAVQTPQAPVYGVQALGAAAPPASSVGVAAQVCLVCTAYAYAPQQAAAAVTQAAP----------------YVKPKVHTDVDPKSGLQKLPSDKLDTAKKEVEYITPADALAEEERRLRQA-NEQVAAQRKPSRPWFTTNVVDHRHAWCSLRDAGERAGMRRVLKQRPWGNPEDPLGGGKEAAGSDVLELMSSAAQHYLKELLNDLKVIAWQRKGGLSTDLLAGIASRLQDPSVQAPSPKAELRRGLVPKLPPVADLPRVLLEEEEGAHRRQCEEREARWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSREQLAASEFARRVAIKHGIGVVAALMKKKELATKEASSAANAESAEAAGDAD------GDDPMGLADRRPTAGGIRGXXXXXXXXXXXXXALSAGGGLKRPLDPLADENDALETVRIIRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPXXDGAAANGLAVAQTAGGGDGAVAKANGERGAARVQISNADLAELLGSTKPKGDPRRWAKVLYRAQNSRQGVHA 3068
MG LIA+A+A++N ++ Q++V+HLK+A+KRMNVRLIELR KIEYNT +MSKLI TQNKIITDEL KLG+++ SL P LDLE ELKKRSD AYLAVKNKVD+AKRSEA KAA + AT PVYG QA GAA P G AAQ + QQ AA AP Y KPKV+ DVDP++GLQKLP+DKLD+AKK+VE+I +D +AEEE RLR + V ++ P+ WF TNVVDHRHAWC LRDAGERAGMRRVLK+RPWGNP +PL GGKEAAGSDVL+LMS AAQ+YLK +L++L V+A+QRKGGLS +LL+G+ SRL+DPSV+ PKAELR+ LVP+LP V DLPRV LE E AHR++CEERE RWD ELADTL TAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLS+EQLA SEFARRVA+KHGIGVVAALM DDPM ++DR T XXX + G GLKRPLDPLA + DA+ETVR IRRR GA +G G A E A ++I+NADLAELL STKP+GDPR+WA+VL+RAQNSR+GVHA
Sbjct: 1 MGTLIAAANAKANPGGVNVAPQKVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLITTQNKIITDELEQKLGMNLASLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAA-------------------------------------------------------------------MKAT----------------------------------------------------------------------------------------------------------------PVYGGQAPGAAPP--HGAGAAAQ---------FTQQQRAAPQAPTAPXXXXXXXXXXXXXXXAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRDPSVK--DPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVSDRPTTGDSSSXXXXSKDSNGKAGNKRTPGAGLKRPLDPLASD-DAVETVRNIRRRLVL------------------------------GAPDDGDXXXXXXXXXRGVGATPPSEEQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_C-linearis_contig8.15540.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 186 bits (471), Expect = 7.490e-45 Identity = 119/323 (36.84%), Postives = 162/323 (50.15%), Query Frame = 3
Query: 1683 KSGLQKLPSDKLDTAKKEVEYITPADALAEEERRLR--------------------------------------QANEQVAAQRKPSRPWFTTNVVDHRHAWCSLRDAGERAGMRRVLKQRPWGNPEDPLGGGKEAAGSDVLELMSSAAQHYLKELLNDLKVIAWQRKGGLSTDLLAGIASRLQDPSVQAPSPKAELRRGLVPKLP---------------------PVADLPRVLLEEEEGAHRRQCEEREARWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSREQLAASEFARRVAIKHGIGV 2474
++GL KLP D LD ++V+ +T A EERRLR + + + AA+R+ +PWF NVVDHR AWC LR+AG RAG+R+VL+ RPWG+P P GGG+EAA S VLEL+S+A Q YLK +L +L V+A+QR+GGLS +LL G+ R++DP ++P L GLVP+ P + PR +L EEGAHRR C EREA W++ +A+ +A A+ V AA+EFARRV K G+G+
Sbjct: 280 RNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDP--RSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGV-------------------------------------AANEFARRVGFKRGVGL 563
BLAST of mRNA_C-linearis_contig8.15540.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 181 bits (458), Expect = 3.290e-43 Identity = 119/323 (36.84%), Postives = 161/323 (49.85%), Query Frame = 3
Query: 1683 KSGLQKLPSDKLDTAKKEVEYITPADALAEEERRLR--------------------------------------QANEQVAAQRKPSRPWFTTNVVDHRHAWCSLRDAGERAGMRRVLKQRPWGNPEDPLGGGKEAAGSDVLELMSSAAQHYLKELLNDLKVIAWQRKGGLSTDLLAGIASRLQDPSVQAPSPKAELRRGLVPKL---------------------PPVADLPRVLLEEEEGAHRRQCEEREARWDSELADTLATAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSREQLAASEFARRVAIKHGIGV 2474
+ GL KLP D LD ++ + +T A EERR R Q + + AA+ + +PWF NVVDHR AWC LRDAG RAGMR+VL+ RPWG+ P GGG+EAA S VLE YLK +L +L V+A+QR+GGLS +LL G+ R++DP ++P L GLVP+ E AHRR C +REA W++ +A+ +A A RK +R + P E + ++SGWLSREQ+AA+EFARRV +K G+G+
Sbjct: 245 RKGLLKLPWDGLDVVSEQAKLVTDARVQLIEERRFRPSFVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAQEDAEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDP--RSPGSALILYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGL 558 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15540.1 >prot_C-linearis_contig8.15540.1 ID=prot_C-linearis_contig8.15540.1|Name=mRNA_C-linearis_contig8.15540.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=986bp MSQGGDGLPSELTNILLREDSRAGVGQPTSVAAAAAAAATVAAAYAAPLAback to top mRNA from alignment at C-linearis_contig8:1181097..1189251+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15540.1 ID=mRNA_C-linearis_contig8.15540.1|Name=mRNA_C-linearis_contig8.15540.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8155bp|location=Sequence derived from alignment at C-linearis_contig8:1181097..1189251+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1181097..1189251+ >mRNA_C-linearis_contig8.15540.1 ID=mRNA_C-linearis_contig8.15540.1|Name=mRNA_C-linearis_contig8.15540.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5916bp|location=Sequence derived from alignment at C-linearis_contig8:1181097..1189251+ (Chordaria linearis ClinC8C monoicous)back to top |