mRNA_C-linearis_contig8.15538.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15538.1
Unique NamemRNA_C-linearis_contig8.15538.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: D8LCB4_ECTSI (PIG-P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB4_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.100e-61
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 MEPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG 288
            M+PLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG
Sbjct:    1 MDPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG 96
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A024TZW3_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZW3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.650e-28
Identity = 47/79 (59.49%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            +E+YGFAGWIAS+V +  YL+WAYVP+S L + GITYYPS+YWA+A+P+ + +T    ++VYIA+N++STAPLDS++TI
Sbjct:   57 MEIYGFAGWIASIVVFVCYLLWAYVPDSILASYGITYYPSRYWALAVPAMLAMTLMALLVVYIAINWVSTAPLDSYNTI 135
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A024U0F3_9STRA (PIG-P domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0F3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.020e-28
Identity = 47/79 (59.49%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            +E+YGFAGWIAS+V +  YL+WAYVP+S L + GITYYPS+YWA+A+P+ + +T    ++VYIA+N++STAPLDS++TI
Sbjct:   57 MEIYGFAGWIASIVVFVCYLLWAYVPDSILASYGITYYPSRYWALAVPAMLAMTLMALLVVYIAINWVSTAPLDSYNTI 135
[Close]
BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A067CW67_SAPPC (PIG-P domain-containing protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW67_SAPPC)

HSP 1 Score: 107 bits (267), Expect = 1.850e-27
Identity = 44/81 (54.32%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG 288
            +E+YGFAGWIAS+V +A YL+WAY+P+S L   GI+YYPS+YWA+A+P+ + ++  + +++Y+A+N +STAPLDS++TI G
Sbjct:   45 MEIYGFAGWIASIVVFACYLLWAYLPDSVLNQYGISYYPSRYWAVALPAMLCMSIFMVLIIYVAINLLSTAPLDSYNTIRG 125
[Close]
BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: W4FT93_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FT93_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.280e-27
Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG 288
            +E+YGFAGWIAS+  +  YL+WAYVP++ L + GITYYPS+YWA+A+P+ + +T    V+ YIA+N++STAPLDS++TI G
Sbjct:   59 MEIYGFAGWIASIAIFVCYLLWAYVPDAILASYGITYYPSRYWALAVPAMLVMTLMALVVFYIAINWISTAPLDSYNTIRG 139
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A1Y1I0L7_KLENI (Phosphatidylinositol N-acetylglucosaminyltransferase subunit P n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0L7_KLENI)

HSP 1 Score: 103 bits (256), Expect = 4.020e-26
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   13 PRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            P RRK  G    EVYGF G IAS+VAYAL+++WAY+PE  L A G+TYYPSKYWAIA+P+   VT  +AVLVY A+  MST PLDS  TI
Sbjct:   17 PIRRK--GAVPAEVYGFVGSIASIVAYALFILWAYIPEQYLHAAGVTYYPSKYWAIALPAYAIVTVFLAVLVYTALCMMSTKPLDSPYTI 104
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A835YPJ9_9STRA (PIG-P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.210e-26
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:   43 IVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTIT 285
            +  VYGFAGW+AS + Y  YL+WA++PE  L ALGITYYPSKYWA+A+P  + V  +  V+ Y ++N M T+PLDS DT+T
Sbjct:    6 VTGVYGFAGWLASFILYGFYLLWAFIPEEQLHALGITYYPSKYWALALPCYVLVALTSIVVGYCSLNMMDTSPLDSLDTLT 86
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BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A485KCT7_9STRA (Aste57867_4527 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCT7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.120e-26
Identity = 44/79 (55.70%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            +E+YGFAGWIAS+V +  YL+WAYVP+  L+  G+TYYPS+YWA+A+P+ + +T  + V+ YIA+N++STAP DS++TI
Sbjct:   54 MEIYGFAGWIASIVIFVCYLLWAYVPDEILEDYGLTYYPSRYWALAVPAMLVMTVFMLVVFYIAINWISTAPFDSYNTI 132
[Close]
BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: A0A6G0W9C3_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9C3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.530e-26
Identity = 44/79 (55.70%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            +E+YGFAGWIAS+V +  YL+WAYVP+  L+  G+TYYPS+YWA+A+P+ + +T  + ++ YIA+N++STAPLDS +TI
Sbjct:   34 MEIYGFAGWIASIVIFVCYLLWAYVPDELLEDYGVTYYPSRYWALAVPAMLVMTVFMLLVFYIAINWLSTAPLDSNNTI 112
[Close]
BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Match: K3WSG6_GLOUD (PIG-P domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSG6_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 4.740e-25
Identity = 43/79 (54.43%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTI 282
            +E +GFAGW+AS + Y L+L+WAY+PE TL+A G+TYYPSK+WA+A+PS + VT+  +++VY A N +ST PLD++ T+
Sbjct:   30 MEFFGFAGWLASTLLYVLFLMWAYLPEETLEAYGLTYYPSKHWALAMPSMLVVTYLFSIVVYKACNLLSTPPLDAYATV 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB4_ECTSI1.100e-6198.96PIG-P domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A024TZW3_9STRA2.650e-2859.49PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A024U0F3_9STRA6.020e-2859.49PIG-P domain-containing protein n=4 Tax=Aphanomyce... [more]
A0A067CW67_SAPPC1.850e-2754.32PIG-P domain-containing protein n=5 Tax=Saprolegni... [more]
W4FT93_9STRA4.280e-2756.79PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A1Y1I0L7_KLENI4.020e-2662.22Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A835YPJ9_9STRA4.210e-2655.56PIG-P n=1 Tax=Tribonema minus TaxID=303371 RepID=A... [more]
A0A485KCT7_9STRA5.120e-2655.70Aste57867_4527 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0W9C3_9STRA8.530e-2655.70PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
K3WSG6_GLOUD4.740e-2554.43PIG-P domain-containing protein n=1 Tax=Globispora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1173867..1174627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D8LCB4
Preferred nameGPI19
KEGG koko:K03861,ko:K10847,ko:K20178
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko01524,ko03420,ko04138,map00563,map01100,map01524,map03420,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0000506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsKOG2257@1,KOG2257@2759
Ec32 ortholog descriptionPIG-P
Ec32 orthologEc-14_005380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04131
Exons3
Model size288
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15538.1prot_C-linearis_contig8.15538.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1173867..1174627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930522.6953535-CDS-C-linearis_contig8:1173866..11739601622930522.6953535-CDS-C-linearis_contig8:1173866..1173960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1173867..1173960 +
1690881112.9725218-CDS-C-linearis_contig8:1173866..11739601690881112.9725218-CDS-C-linearis_contig8:1173866..1173960Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1173867..1173960 +
1622930522.71654-CDS-C-linearis_contig8:1174157..11742301622930522.71654-CDS-C-linearis_contig8:1174157..1174230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1174158..1174230 +
1690881112.9892368-CDS-C-linearis_contig8:1174157..11742301690881112.9892368-CDS-C-linearis_contig8:1174157..1174230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1174158..1174230 +
1622930522.733345-CDS-C-linearis_contig8:1174506..11746271622930522.733345-CDS-C-linearis_contig8:1174506..1174627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1174507..1174627 +
1690881113.0015612-CDS-C-linearis_contig8:1174506..11746271690881113.0015612-CDS-C-linearis_contig8:1174506..1174627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1174507..1174627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15538.1

>prot_C-linearis_contig8.15538.1 ID=prot_C-linearis_contig8.15538.1|Name=mRNA_C-linearis_contig8.15538.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
MEPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGI
TYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITG
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mRNA from alignment at C-linearis_contig8:1173867..1174627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15538.1 ID=mRNA_C-linearis_contig8.15538.1|Name=mRNA_C-linearis_contig8.15538.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=761bp|location=Sequence derived from alignment at C-linearis_contig8:1173867..1174627+ (Chordaria linearis ClinC8C monoicous)
ATGGAACCTCTCCCAAGGCGACGAAAAGAAGGCGGGGGTGAGATTGTGGA
AGTGTACGGCTTTGCGGGCTGGATCGCGAGTCTTGTGGCATACGGTGAGC
GGAAAAATGATCCCCAAAACAACACAGCAGTTAGTTGCGCCGCACGTTCA
GCTGCTTGCTAGTCGCGCAGTGTGCACACATGCACACAGGAAGGTACAGC
TCCAGCAGCTCAAAGGATTTCACAACGAACCCTCTCGATCCTCACGGCGC
AGATGTTTGCGCTATCCGCCATGTCTCTCCTTGAAATACAGCCCTCTACC
TGGTGTGGGCGTACGTCCCGGAGAGCACGCTCCAAGCCCTTGGCATCACG
TACTACCCTAGCAAGTGAGACCTTGGGTAAAGCACGTGGAAGTTTGAATG
CGTCGTGTATCCTTGAGCCTTGCTGCGTACGGTACGGCAGGCTTTGGAAA
GCTTGAGGCCTCAAATATAACGATTTCGATACCGTTTGTGTTTGCCTGCT
GGCTGGGTCCGTGGTGAGCTCCGTGGTGGCCGTTATTCTTGTCGCATTGC
AAATGCAGTAGTCTACAAGTAAAGGTTCCCGGTGGCGTTCCAATGCTCGG
GGGCACAACCATTTTCTTTTCTCGCCCTTGCCCACGGCAGGTATTGGGCG
ATCGCCATCCCGAGCGCCATCTTTGTCACGTGGTCGGTCGCTGTCCTGGT
GTACATCGCGGTGAACTTCATGAGCACCGCCCCGCTCGATTCTTTCGACA
CCATTACAGGT
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Coding sequence (CDS) from alignment at C-linearis_contig8:1173867..1174627+

>mRNA_C-linearis_contig8.15538.1 ID=mRNA_C-linearis_contig8.15538.1|Name=mRNA_C-linearis_contig8.15538.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig8:1173867..1174627+ (Chordaria linearis ClinC8C monoicous)
ATGGAACCTCTCCCAAGGCGACGAAAAGAAGGCGGGGGTGAGATTGTGGA
AGTGTACGGCTTTGCGGGCTGGATCGCGAGTCTTGTGGCATACGATGGAA
CCTCTCCCAAGGCGACGAAAAGAAGGCGGGGGTGAGATTGTGGAAGTGTA
CGGCTTTGCGGGCTGGATCGCGAGTCTTGTGGCATACGCCCTCTACCTGG
TGTGGGCGTACGTCCCGGAGAGCACGCTCCAAGCCCTTGGCATCACGTAC
TACCCTAGCAACCCTCTACCTGGTGTGGGCGTACGTCCCGGAGAGCACGC
TCCAAGCCCTTGGCATCACGTACTACCCTAGCAAGTATTGGGCGATCGCC
ATCCCGAGCGCCATCTTTGTCACGTGGTCGGTCGCTGTCCTGGTGTACAT
CGCGGTGAACTTCATGAGCACCGCCCCGCTCGATTCTTTCGACACCATTA
CAGGTGTATTGGGCGATCGCCATCCCGAGCGCCATCTTTGTCACGTGGTC
GGTCGCTGTCCTGGTGTACATCGCGGTGAACTTCATGAGCACCGCCCCGC
TCGATTCTTTCGACACCATTACAGGT
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