mRNA_C-linearis_contig8.15534.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15534.1
Unique NamemRNA_C-linearis_contig8.15534.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: D8LC94_ECTSI (SET domain and mariner transposase fusion n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC94_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 3.020e-97
Identity = 186/326 (57.06%), Postives = 211/326 (64.72%), Query Frame = 3 
Query:   60 MLLLATLLDSG--TTSILLPFLAPSEVVALS-TSTRFFALVSATLTQLRVDVSSGSAPYPIPCDSLHECR---------GLSSGSRQQKWSLGGTLPPSFTYLHEVMRASEVVEDDFLQGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFV--IRR---GSFLRPRLAFFTKSRVEAGEELTYDYGATGSAGG 986
            M L+  L+DS   TTS LL FL   + VA + TST  F  V A + +   D+S GS+PYPIPCDS H            G S  S+  KWSLGG +PPSF YL+E + A +    D L+GCACFG C        DD+   CPCVQLN  VQSGPAPLFECH  C+CG ACRLRATQR      KV PM+RLRYMG KGWGAY V A+  GT+VADYTGEVLP+ EA+RRV AYDRDGLNYVLTTQEFFQGGKQV QTIVDATT GN SRFFNH C+P LSVFV  +RR   G+F  PR    T  R    +      G T S GG
Sbjct:    1 MPLVEALVDSSCNTTSTLLSFLGWEDAVAFAITSTLLFVQVKAIIQKQCDDISCGSSPYPIPCDSAHRPLHGVQQATPGGSSHSSQSFKWSLGGPVPPSFMYLNEAIHAFDDSGADELEGCACFGGCGV------DDTL--CPCVQLNVAVQSGPAPLFECHTSCTCGIACRLRATQR--GAASKVPPMLRLRYMGKKGWGAYSVGAIAGGTYVADYTGEVLPVPEARRRVHAYDRDGLNYVLTTQEFFQGGKQVFQTIVDATTCGNVSRFFNHSCEPTLSVFVAVVRRLHVGAF-DPRADSHTGLRSAVWKSAGGSKGPTHSGGG 315
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: A0A7K8R1L4_9PASS (SETMR methyltransferase (Fragment) n=1 Tax=Smithornis capensis TaxID=363769 RepID=A0A7K8R1L4_9PASS)

HSP 1 Score: 142 bits (358), Expect = 1.580e-35
Identity = 103/308 (33.44%), Postives = 141/308 (45.78%), Query Frame = 3 
Query:  375 LQGCACFG------ECEAQYDVDADDSSGSCPCVQLNAT-VQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDYGATGSAGGTASQANDDHSGPQQQPIHKKPRTRSRAEGDSPRRNRGLYRGHGTLQVQNKGGHGEAGASGDFNGRRKSGGMHELSLRRPCLCGSRRCRGFLPYNRAI 1277
            L GC+C        EC   +    D SSG C    L  T +Q G AP+FEC A C C  +CR R  Q    GG ++R  +++     KGWG   ++A+P G+FV +Y GEVL + EA+RR+ A   +  NY+L  +E    G+ V +T VD T  GN  RF NH C+PNL +  +R  S + PRLA F  + + AGEEL YDY                                S    +SP    G  R H  L+ +N+                          R+PC CGSR C  FLP++ ++
Sbjct:   21 LPGCSCGSSSCVAPECPCLWR--GDSSSGQC----LRGTELQGGSAPVFECSALCRCSDSCRNRLVQ----GGLRLR--LQVFQSRGKGWGVRTLEAIPRGSFVCEYAGEVLGVAEARRRILAQTPEDSNYILALREHLHDGR-VLETFVDPTHIGNVGRFLNHSCEPNLVMVPVRVHSMV-PRLALFAATDISAGEELCYDY--------------------------------SGRFLNSP----GTSREHKPLEEKNR-------------------------PRKPCYCGSRTCASFLPWDSSL 253
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: L8GPN6_ACACA (SET domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPN6_ACACA)

HSP 1 Score: 135 bits (341), Expect = 3.330e-33
Identity = 72/159 (45.28%), Postives = 91/159 (57.23%), Query Frame = 3 
Query:  492 PLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRV-PAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDYG 965
            PLFECH+ C C   C  R  Q+       +   + +     KGW    +  V  G FV++Y GEV+   EA+RR    YDR GLNY+L  +EF        +T +D T  GN SRFFNH CDPN+ +F++R GS + PRLAFF    V AGEELTYDYG
Sbjct:   65 PLFECHSRCGCSADCASRVVQK------GITLPLEVFMSATKGWSVRVLSPVRKGQFVSEYAGEVVSTEEAQRRWRDEYDRAGLNYLLVVREFIPARGATLRTNIDGTRLGNVSRFFNHSCDPNMLLFLVRVGSLI-PRLAFFVCRDVAAGEELTYDYG 216
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: UPI00188733C8 (histone-lysine N-methyltransferase SETMAR isoform X1 n=3 Tax=Pungitius pungitius TaxID=134920 RepID=UPI00188733C8)

HSP 1 Score: 124 bits (312), Expect = 1.560e-28
Identity = 79/212 (37.26%), Postives = 107/212 (50.47%), Query Frame = 3 
Query:  375 LQGCAC-FGECEAQYDVDADDSSGSCPCVQL--------NATVQSGPA------PLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDYG 965
            L GC+C F  C  +          +C C++          A +  GPA      P+FEC+A C+C  AC  R  Q    GG ++R  + +     KGWG   ++A+P GTFV +Y GEV+   EA+RR  A      NY++  +E   G   V +T VD   +GN  RF NH C PNL +  +R  S + PRLA F    V A EELT+DYG
Sbjct:   61 LPGCSCRFASCRPE----------NCSCLRAYGVAYDGAGALLARGPAASGYCSPVFECNALCACSDACSSRVVQ----GGLRLR--LEVYATEGKGWGVRTLEAIPRGTFVCEYAGEVIGPEEARRRQVAQRPGDNNYIIAVREH-AGEGSVTETFVDPAAAGNAGRFLNHSCRPNLFMQPVRVHSLV-PRLALFAGRDVAAREELTFDYG 254
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: A0A8J4ZGR7_9CHEL (Histone-lysine N-methyltransferase SUV39H2 n=3 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4ZGR7_9CHEL)

HSP 1 Score: 129 bits (323), Expect = 2.740e-28
Identity = 80/220 (36.36%), Postives = 109/220 (49.55%), Query Frame = 3 
Query:  312 PPSFTYLHEVMRASEV-VEDDFLQGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSF--LRPRLAFFTKSRVEAGEELTYDY 962
            P SF Y+++      + + DD L GC C    E + +     S  S    +         +P++EC+  C+CGP C  R  Q     G KV+  I  R     GWG   ++A+P GTFV +Y GEV+   EA+RR   YD +G  Y+      +  G   C   VDA   GN S F NH CDPNL VF +   S     PRLAFF+   ++ GEEL++DY
Sbjct:  353 PESFNYINDYKAGEGISIPDDPLVGCDCEDCYENRSNCCGHQSGSSFAYTKYKKLKVPAGSPIYECNKRCACGPGCLNRVVQH----GRKVKLAI-FRTSNLCGWGVKTLEAIPKGTFVMEYVGEVISEQEAERRGHKYDEEGRTYLFDLD--YDDGD--CPFTVDAAYQGNISHFMNHSCDPNLVVFGVWINSLDPRLPRLAFFSLRDIKRGEELSFDY 563
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: UPI001A9863EB (histone-lysine N-methyltransferase SETMAR n=1 Tax=Gasterosteus aculeatus aculeatus TaxID=481459 RepID=UPI001A9863EB)

HSP 1 Score: 123 bits (308), Expect = 3.990e-28
Identity = 74/193 (38.34%), Postives = 98/193 (50.78%), Query Frame = 3 
Query:  384 CACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDY 962
            C C   C   YD       G+   + L A      +P+FEC+A C+C  AC  R  Q    GG ++R  + +     KGWG   + A+P GTFV +Y GEV+ + EA+RR  A      NY++  +E   G   V +T VD    GN  RF NH C PNL +  +R  S + PRLA F    V A EELT+DY
Sbjct:   62 CPCLRTCGRAYD-------GAGALLALGAAGSGYCSPVFECNALCACSDACSSRVVQ----GGLRLR--LEVYATENKGWGVRTLQAIPRGTFVCEYAGEVIGLEEARRRQLAQRPGDNNYIIAVREH-AGEGSVTETFVDPAAVGNAGRFLNHSCRPNLFMQPVRVHSLV-PRLALFAGRNVAAREELTFDY 239
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BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: UPI00189F8CEF (histone-lysine N-methyltransferase SETMAR isoform X1 n=2 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F8CEF)

HSP 1 Score: 123 bits (308), Expect = 5.290e-28
Identity = 75/197 (38.07%), Postives = 107/197 (54.31%), Query Frame = 3 
Query:  372 FLQGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDY 962
            F + C+C      Q    A DS+G+   + L+ T     +P+FEC+A C+C  AC  R  QR    G ++R ++       +GWG   ++A+P GTFV +Y GEV+   EA+RR  A   +  NY++  +E   G   + +T VD  T GN  RF NH C PNL +  +R  S + PRLA F    V+A EELT+DY
Sbjct:   65 FPENCSCL-----QTHGQAYDSTGT--LLTLSRTNSGYCSPVFECNALCTCSDACSNRVVQR----GLRLRLVVYGTEN--RGWGVRTLEAIPCGTFVCEYAGEVISFEEARRRQLAQRSEENNYIIAVREH-AGTGSITETFVDPATVGNVGRFLNHSCQPNLFMQPVRVHSVV-PRLALFAGRDVDAQEELTFDY 246
[Close]
BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: UPI0012EDE427 (histone-lysine N-methyltransferase SETMAR n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDE427)

HSP 1 Score: 122 bits (307), Expect = 6.980e-28
Identity = 76/197 (38.58%), Postives = 102/197 (51.78%), Query Frame = 3 
Query:  378 QGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGA--KGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDY 962
            + C C       Y     DS+G+   + L  T     AP+FEC+A C+C  AC  R  Q    GG +    +RL   G   KGWG   + A+P GTFV +Y GEV+ + EA+RR  A   +  NY++  +E   G   V +T VD    GN  RF NH C PNL +  +R  S + PRLA F    ++A EELT+DY
Sbjct:   66 ENCTCLRTRGRAY-----DSAGA--LLTLGPTDSGYCAPVFECNALCACSDACSNRVVQ----GGMR----LRLEVYGTENKGWGVRTLGAIPRGTFVCEYAGEVIGLEEARRRQLAQSSEENNYIIAVREH-AGTGAVAETFVDPAAVGNVGRFLNHSCQPNLFMQPVRVHSLV-PRLALFAGRNIDAQEELTFDY 245
[Close]
BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: A0A4Z2HUG6_9TELE (Histone-lysine N-methyltransferase SETMAR n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2HUG6_9TELE)

HSP 1 Score: 121 bits (304), Expect = 1.820e-27
Identity = 70/174 (40.23%), Postives = 96/174 (55.17%), Query Frame = 3 
Query:  441 GSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDY 962
            G+   + L  T     +P+FEC+A C+C  AC  R  Q    GG ++R  + +   G KGWG   ++AVP GTFV +Y GEV+ + EA+RR  A      NY++  +E   G   V +T VD    GN  RF NH C PNL +  +R  S + PRLA F    V++ EELT+DY
Sbjct:   80 GAGALLNLGPTDSGYCSPVFECNALCACSEACSNRVVQ----GGLRLR--LEVYRTGNKGWGVRALEAVPRGTFVCEYAGEVIGLEEARRRQLAQRVGENNYIIAVREH-AGAGPVAETFVDPAAVGNVGRFLNHSCQPNLVMQPVRVHSVV-PRLALFAGRSVDSREELTFDY 245
[Close]
BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Match: A0A2G9HT53_9LAMI (Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HT53_9LAMI)

HSP 1 Score: 121 bits (304), Expect = 3.400e-27
Identity = 95/305 (31.15%), Postives = 136/305 (44.59%), Query Frame = 3 
Query:   99 SILLPFLAPSEVVALSTSTRFFALVSATLTQLRV-DVSSGSAPYPIPCDSLHECRGLSSGSRQQKWSLGGTLPPSFTYLHEVMRAS------------EVVEDDFLQGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECHAGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGTFVADYTGEVLPIHEAKRRVPAYDRDG--LNYVLTTQEFFQGGKQVCQTIVDATTSGNESRFFNHCCDP-NLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYDYG 965
            +I++P+L P+E+ A+S +++    +S T+T  R  D S GS   PIP         +S  S  Q +S     P     L    R +            E   D FL        CE      A  +   CPC++ +  + +      EC   C CG  C  R TQ    GG  VR  +++     KGWG Y  + +P G FV +Y GE+L   EA RR   YD+       +L  +E    G +  +  +DAT  GN +RF NH CD  NL   ++R    L PR+ FF    ++  EELT+ YG
Sbjct:   23 AIVIPYLNPAELAAISCTSKSLYQISKTITSRRTSDASRGSENLPIPF-----LNPISDDS--QPYSYFFYTPTQTLRLRPDFRQAWGSNDQSRLCRKEGRPDPFLLRVEGASGCEC-----ASCNGDCCPCLEADEFLLTR-----ECGPSCKCGLGCGNRVTQ----GGVTVR--LKMVKDEKKGWGLYAAEFIPRGQFVCEYAGELLSTKEATRRQQTYDKLASITPALLVVKEHLPSGNKCMRINIDATRIGNIARFVNHSCDGGNLDTVIVRSSGALLPRICFFASRDIQENEELTFSYG 304
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC94_ECTSI3.020e-9757.06SET domain and mariner transposase fusion n=1 Tax=... [more]
A0A7K8R1L4_9PASS1.580e-3533.44SETMR methyltransferase (Fragment) n=1 Tax=Smithor... [more]
L8GPN6_ACACA3.330e-3345.28SET domain containing protein n=1 Tax=Acanthamoeba... [more]
UPI00188733C81.560e-2837.26histone-lysine N-methyltransferase SETMAR isoform ... [more]
A0A8J4ZGR7_9CHEL2.740e-2836.36Histone-lysine N-methyltransferase SUV39H2 n=3 Tax... [more]
UPI001A9863EB3.990e-2838.34histone-lysine N-methyltransferase SETMAR n=1 Tax=... [more]
UPI00189F8CEF5.290e-2838.07histone-lysine N-methyltransferase SETMAR isoform ... [more]
UPI0012EDE4276.980e-2838.58histone-lysine N-methyltransferase SETMAR n=1 Tax=... [more]
A0A4Z2HUG6_9TELE1.820e-2740.23Histone-lysine N-methyltransferase SETMAR n=2 Tax=... [more]
A0A2G9HT53_9LAMI3.400e-2731.15Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1120524..1126486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.0
Seed ortholog evalue1.3e-83
Seed eggNOG ortholog2880.D8LC94
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11419,ko:K11433
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categorysignal peptide
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-14_005625.1
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons4
Model size1463
Cds size1224
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15534.1prot_C-linearis_contig8.15534.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1120704..1126427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.8192604-UTR-C-linearis_contig8:1120523..11207031622930521.8192604-UTR-C-linearis_contig8:1120523..1120703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1120524..1120703 -
1690881112.526261-UTR-C-linearis_contig8:1120523..11207031690881112.526261-UTR-C-linearis_contig8:1120523..1120703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1120524..1120703 -
1622930521.9106302-UTR-C-linearis_contig8:1126427..11264861622930521.9106302-UTR-C-linearis_contig8:1126427..1126486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1126428..1126486 -
1690881112.6004035-UTR-C-linearis_contig8:1126427..11264861690881112.6004035-UTR-C-linearis_contig8:1126427..1126486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1126428..1126486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.8380258-CDS-C-linearis_contig8:1120703..11211111622930521.8380258-CDS-C-linearis_contig8:1120703..1121111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1120704..1121111 -
1690881112.5521572-CDS-C-linearis_contig8:1120703..11211111690881112.5521572-CDS-C-linearis_contig8:1120703..1121111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1120704..1121111 -
1622930521.861873-CDS-C-linearis_contig8:1121366..11214651622930521.861873-CDS-C-linearis_contig8:1121366..1121465Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1121367..1121465 -
1690881112.5661588-CDS-C-linearis_contig8:1121366..11214651690881112.5661588-CDS-C-linearis_contig8:1121366..1121465Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1121367..1121465 -
1622930521.8784714-CDS-C-linearis_contig8:1121799..11220941622930521.8784714-CDS-C-linearis_contig8:1121799..1122094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1121800..1122094 -
1690881112.5768108-CDS-C-linearis_contig8:1121799..11220941690881112.5768108-CDS-C-linearis_contig8:1121799..1122094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1121800..1122094 -
1622930521.895041-CDS-C-linearis_contig8:1126005..11264271622930521.895041-CDS-C-linearis_contig8:1126005..1126427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1126006..1126427 -
1690881112.587693-CDS-C-linearis_contig8:1126005..11264271690881112.587693-CDS-C-linearis_contig8:1126005..1126427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1126006..1126427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15534.1

>prot_C-linearis_contig8.15534.1 ID=prot_C-linearis_contig8.15534.1|Name=mRNA_C-linearis_contig8.15534.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=408bp
MLLLATLLDSGTTSILLPFLAPSEVVALSTSTRFFALVSATLTQLRVDVS
SGSAPYPIPCDSLHECRGLSSGSRQQKWSLGGTLPPSFTYLHEVMRASEV
VEDDFLQGCACFGECEAQYDVDADDSSGSCPCVQLNATVQSGPAPLFECH
AGCSCGPACRLRATQRRGEGGCKVRPMIRLRYMGAKGWGAYPVDAVPAGT
FVADYTGEVLPIHEAKRRVPAYDRDGLNYVLTTQEFFQGGKQVCQTIVDA
TTSGNESRFFNHCCDPNLSVFVIRRGSFLRPRLAFFTKSRVEAGEELTYD
YGATGSAGGTASQANDDHSGPQQQPIHKKPRTRSRAEGDSPRRNRGLYRG
HGTLQVQNKGGHGEAGASGDFNGRRKSGGMHELSLRRPCLCGSRRCRGFL
PYNRAIL*
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mRNA from alignment at C-linearis_contig8:1120524..1126486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15534.1 ID=mRNA_C-linearis_contig8.15534.1|Name=mRNA_C-linearis_contig8.15534.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5963bp|location=Sequence derived from alignment at C-linearis_contig8:1120524..1126486- (Chordaria linearis ClinC8C monoicous)
GAGACGCTCCGCGTCGACCAGCTGCTCGCTGCGCTGAGATCACCACGCTG
TTAGGTCCTATGCTGTTGTTGGCGACGCTTCTTGACTCTGGTACCACTTC
GATCCTTCTGCCATTTCTCGCTCCTTCTGAAGTTGTCGCGTTGTCGACCT
CCACTAGGTTTTTTGCCCTAGTATCCGCAACACTCACCCAGCTCCGGGTT
GATGTGTCATCTGGTTCGGCGCCGTATCCCATACCGTGCGACTCGTTGCA
CGAATGCCGAGGACTGTCGTCAGGATCGCGTCAACAAAAATGGAGCCTTG
GTGGAACCCTACCGCCGAGCTTTACCTATCTCCACGAAGTGATGAGAGCG
TCCGAAGTTGTTGAAGACGATTTCCTTCAGGGATGTGCTTGTTTCGGCGA
GTGCGAAGCCCAGTACGACGTGGACGCGGATGACAGCAGTGGGTCGTGCC
CTTGCGTCCAGCTGAATGCAACTGTGCAGAGGTAAGCTTTGAGTATGTTG
CGCTTCCCAATTGAGCATAAGGGACAAAATCAAAGGCGCTGTGCGCACGC
AGTGCTGCTGCTGCTGTGCACAATCGTGTGCCTAGTGTGTGCGCGCTACC
CCGCGCGTGCCTCAGTTGATCAGCTGATGGCCCGTTGTATGTGTCGTTAG
GGCCGTTCTTATCGAGCGAAAAAAAATCTCGGATTCGTAAACGTGAACCC
TTATCCATTGGTTGCACCTTTTGTTCCCTCCTCGGTTTCTGCTCAACACA
CATAAAAAAGTGGTCAACCCAAATGTTTCTCAAACAAAGTTTTTTTTTGC
ACCTGTAACCAATGACGTTAGATACCACCCCTTGAAAATCTCTGGCAGTC
TCCGTCCACCAGAAGTCTCGTTCACTGGCCAATACCGGTAGTTCACCACA
TCAGCTCTTCTCACTAAACTAGCAACTTGACGAGGTCAACCCCTGCGATG
TGTTCCTATCTCCGAGAAATTGGTTATAATACCACAGCTTTACGGTGGGT
TTCTCCCCGATATATTTGCTGTTGACCCGGCAGAGCATTGCGGGGGAGGT
TTATGACGTTTTCCCAGTTTTAGGTGTTTTCTTCTCCACCTATCCCATAT
TACGTCACTGTATTGAACTGTTCATCCACCACTTAGGGATTTGTCTCTTT
GAGGGGAGGTTCTTTCTTTGATGCCGTTTTGATTTATAAAAAGGAAGTTC
ACGGATTCGTAAAAAATTCCGCCGCGTTCTTATCGCACATATCCACATAT
CCCCTCTGGTCCTCTGCTATTGTATTGCGACTACCCTCTCGTCTAGCCTC
ACCGAAGGACTTAAGCAACAGATTGCACACTACTCGCCGATAGCACGATA
GGCTAGTTGTTTCCGACAGAAGGAATTATCTTCTGGCATGCCCTATGAGA
GGGGATATCGTGAAGTTGATCATCGTGTTGGACTTTCGGTCGCTTTGGCG
GGCACAGAGCAACTCATCCCACAACAACAGCAAAACCATCGACTCGTGAC
ATTTTTTTTGTCGGTAGCGGCCTGTGAACAACCCTCTGAGGGGTTGGGAC
AAGTTTTGCACACTTTTGTGCGTAAGAGCAGCCCTCCTACCGCGTCTGCC
CGATCCCTCCTCTGTTTCCTCGGATTCGTGAATCGAACAGCCGCGTTTTT
TTCGCCGCCCTTGTTGTCCTCGGATTCGAGGAGCATAAATTCACGAATTC
ACGAATCCGTGAAAAAACTTGTTCGACGAGAAAGACCCTTAGTCTCCCTT
TTCTCTTGTGTGTTTTGTGAGTGCTGCCGATTTCCCGATGTGGTACTGCT
CTAAAAGTACCGCAGCGGAGCAGGCGAACACGCGGGTCGGCGCGGTCGCA
CAGGTCGGCGTCAGCGAACGCTGCGCGATAAAAATCAAGCTTGGCTATCA
AGCCTCTGTTTTTGCACAGGGATTGGGGCGCCCGACCGAGAAGCCGCTCT
CAGGGCGTTGAGATTGGGTGCTTTCGCATGTGGCTGCAGGCTACGTGGGT
TCAGCTGCATAGCTCTTGTCGAAGGTTATTTATCCCGCGGTAAAAGTACT
GGTGGTTTGGGGGCGCCAATGCCGTGTGTATTGCAGACGCTCACGTCGGC
ATGAGGAGGTTCTAATTTTTTTATTTGCTGACCGGCGACCTCACTCAATC
AAGCACACAGAAAAAGTAACCTACCTTCGCAACTTAAGGCGTCGGCAAGG
GGGGGGGGGTCGCAGATGTAGTGGTTCTTGGGGCTCAGTGAAACACGCGA
ACGATTGATTTTTTGTGTCTTTTTTCTTTGGGTATGTGAAAATGACCGCA
CGGGCCCTCCAGAAAGCACCGAGAGCACACTTTTCCAGTTCGACCCTTAG
CGTGCTGCTGTATATACCCTCGAGTATTTCATACGCAACAGTTTGCATTT
CCTTACAGAAAGGAAGTGTGTGCCCTTTCTTTGTAGGTGCGGGAACGCGG
AGCTTTTGCTTAAAAACCGTGCAAAAATCGCTCTTTCGAAAAGACTCTAA
AACACCCATCTCACCGAGCGAGTGGTGTTTACGAAGTCATCGAGCGAGGC
TATCACGAGCATGAACACGCGCGAGCCGCTAGCAAGGCGTGCTGATATGG
TGTGTAGGAGCCGTCCCATGTCGTCGACAGCAGCAGCAGATAGCTATACG
TAATAGAAGCCACGCTTGAGAGATTTTCGTGAGCACGAACGATTTTTTCA
ACCGCTCTTTTTTGGTCCAAAGCGGTGAATATTTGGATCAACACCCCGGA
GCCTCACACCGTGGGTTTTGCCCCAATCAAAAAACAAAAACGGACTCAAA
ACGGATTTGACTCGAATGTAGCCCGGTTGTGACAGGAGCATGTAAAATAT
AATTATTCCAGGACATTTGTCAGCCAAATTGCAAATTGCACACACTTCAA
CGTTTTTTCGCGCTAAGGGTGGTTAAAAAATGACGCCAAATAGACCGCGT
TTTTCACCAAACAGAGCTGGAAATCTTGGAACACCTATGAAAAACCTCGG
AATACCTCTGATAAGGCTGCAAAAGTGTCCGTTTCTTGGAAACCCTACAC
TAATTTCAAGTGAGGCTCCGTGAAGTTCAGCGGGGGGGTATGATTTTTGC
TCCGAAAAGGCCTATACTGCTTTTAGTATACCCCTCACCGTCCCCTTAAG
TTCGCCCCGATACACCCAACACTATGGGAATGGAAGACGGACCCGACTAC
TTTCAGCAGGCAGCTGCGCCGCCCCTTTCTCTCTGTGCAAACGCTGCCAA
CATCGAACTCTAGTTATAACCCGTCAGTCGCACCAAGACACAAAGCTGCG
ACCTATCCAAAAAGCATTTTTTGTTTCATGTGCTGTGGCCAACGTCTACT
GCTCTCCTTACACCGCTGTGCACAGAGTGGCAACAACATCTACCTTAAGG
CGGCCCATCGCACCATACTAAAATCAGTATATATAATCCTTTTCGGAGCA
AATAAGATACCCCCGGCATACCCCCCCGGCTGAACATCACGGAGCCTCAC
TTGAAATAAGTATAGGAGTTCCAATCGACATGGTCTTTCTTCGAAATTTC
AGAGGTGTTCGTTGAAAACCAGAGGAGGAGTTTTTTTAGGCGATTTGCGG
AGTCTTTCGACCACATTTTAAAGTACCGCTTGCGTGCTCGAAAGTATTGT
GCCGCCGCCGCCGCTGCTGTGCTATGAGGTTAGTTATTCATTTTCTCCCA
AAATAGCAGGGCTAAATTCGCGTCAAGTCCGTTTTGTCATTGGGGCAAAA
GCCACGATGTGAGGCTCCGGGGCGTTGATCCAAACAATCACCCGAATTTC
CCGAAAAAGCGACCGAAAAAAACATGACTCGTGCTCACGAAAACCTTCAC
AGCGCGGCTTGTAGCTGTCTGCTGCCGCTGCCCAGGACATGCGACGGCTC
CTACACACCATATCAGTAGCTCCTCCAAGCGGCTTGAGCTGTTTTTGCTT
GTGGGGGGCGAGCTAGCTGATCTCCTGAATACCAAACTGTCTGTGCAACG
TACGTTTGACAGACTTTTCTGAAGAGCGATTTTTGCACCTTTTGCAGAGG
AAAAGCTCCGCCTTCCCGACCACTTCAAACAACGGCGGGAGGCAAATCTG
CAGAGAATAGAAAACTCTTGAATCTGAATAACTAAGCTGATAGCACAGCC
ACAGCAGCAGCGGCGGCACCACAACGTGGAAAGTCAAGGCCTGGCCCGTG
CGGTGATTTTTTACGTACCCAAACAAAAAAGCAACTAAAAAATCAGTCGG
GCGTGCGTTTTCACTGAGCCCCCAAACACGGAGAAAAAAAAAAAACACAG
GGCCACGTGCGATGGGCCGCCGTAAGTACCCTGACCCATCCCTAAACCCT
TTTCCCGTATCCCGACGCCCTGCCCCCTGTCCGCCTACAAAGTGGTCCCG
CGCCGCTGTTCGAGTGCCACGCTGGTTGCTCTTGCGGCCCCGCGTGCCGA
CTGAGAGCAACGCAAAGACGAGGAGAAGGCGGCTGCAAGGTTCGCCCGAT
GATCAGGCTTCGCTACATGGGGGCAAAGGGTTGGGGCGCTTACCCCGTTG
ACGCCGTGCCGGCGGGAACTTTCGTGGCGGACTACACCGGAGAGGTGCTA
CCAATCCACGAAGCGAAGAGGAGGGTGCCCGCGTACGACCGGGATGGGCT
GAACTACGTCTTGACCACTCAGGAGTTTTTCCAGGGGGTGCGTCACCTTG
TTTGTGTTGTCTAGCTTCGTAAGCTATTGCAGATGCAGGCGGCACTTGTG
TCTCGTGAGTAGATCTTGTCTCTAGTGGTGTGCCGTCTTGGGGTCGTCAG
TGACTGCCCCTACCAACTCTTTACCTTGGAACGGGCGAACACACGACCCA
CACAGAATTCATGAAGCTCTCATTTTTTATATTTATCTTTCTCGCCCATT
AATGTTTTTTAATATCTAGGGCGGAATGCAAAAGGAAGCCCGGAATGTTC
GGGGGGGGTTGTCCTTGCGAATACTGAATATGTGCAACACGTCATTTTGA
TTGCATGAACTGTGCGTGCAGGGAAAACAGGTGTGCCAAACAATCGTTGA
CGCCACGACGTCTGGAAACGAGTCGAGATTTTTCAACCACTGTTGCGACC
CCAACCTGTCCGTGTTCGTGGTGAGCGCTTGTCGTGAGAGGATAATGATC
GGATTGACCTGTGAAGCTGGTTGTATCTGGAATGCCCAGGAAAACCTGAC
AGATTCTAGCATGCACAGCAGGGTAGTTCGTTGCGGTTATCGTTGTCCGT
GAGGCACCGTAAGCAGGTCGGCAGATCTCGTTGCGTGTACCAGACGCTAC
GTTTTCGGTGTCGAGGTTGCTAAGCCCCTCATTAACGCCCTACACCCATC
TGCCGTCCCACTCCCACGATTTCAGATACGACGGGGCTCTTTCCTAAGAC
CCCGCCTGGCTTTCTTCACCAAGAGCCGCGTGGAGGCGGGAGAGGAATTG
ACGTACGACTACGGAGCCACAGGGTCGGCAGGCGGGACTGCCTCACAAGC
CAACGATGACCATAGCGGTCCCCAGCAGCAGCCGATTCACAAGAAACCAC
GAACAAGAAGCAGGGCCGAGGGAGACTCTCCACGCAGAAATCGAGGCTTG
TACCGGGGCCACGGCACGTTGCAAGTGCAGAATAAGGGCGGCCATGGGGA
GGCAGGGGCCTCCGGTGATTTTAACGGTCGTAGGAAATCGGGGGGGATGC
ATGAGCTATCTTTGCGGCGACCGTGTTTATGTGGCTCGCGGCGCTGTCGT
GGGTTTTTACCCTATAACCGAGCGATCTTGTAGATGTTTTGGATGAGTTC
CACGCGAGAAATGTAAAGCATGCGATTCAGGAGGTGGCTTGGTGCACAGA
TGGTAATTTTTCATCTTGCACAAGAGGTTGTTTCTTCAGCGAGGGAATCG
AAACCCACAAAGTTTTAGTGACCTGTCTGATAGTGGCTTCTGAAGGTCGG
GCACGGTTCTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:1120524..1126486-

>mRNA_C-linearis_contig8.15534.1 ID=mRNA_C-linearis_contig8.15534.1|Name=mRNA_C-linearis_contig8.15534.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2448bp|location=Sequence derived from alignment at C-linearis_contig8:1120524..1126486- (Chordaria linearis ClinC8C monoicous)
ATGCTGTTGTTGGCGACGCTTCTTGACTCTGGTACCACTTCGATCCTTCT
GCCATTTCTCGCTCCTTCTGAAGTTGTCGCGTTGTCGACCTCCACTAGGT
TTTTTGCCCTAGTATCCGCAACACTCACCCAGCTCCGGGTTGATGTGTCA
TCTGGTTCGGCGCCGTATCCCATACCGTGCGACTCGTTGCACGAATGCCG
AGGACTGTCGTCAGGATCGCGTCAACAAAAATGGAGCCTTGGTGGAACCC
TACCGCCGAGCTTTACCTATCTCCACGAAGTGATGAGAGCGTCCGAAGTT
GTTGAAGACGATTTCCTTCAGGGATGTGCTTGTTTCGGCGAGTGCGAAGC
CCAGTACGACGTGGACGCGGATGACAGCAGTGGGTCGTGCCCTTGCGTCC
AGCTGAATGCAACTGTGCAGAGATGCTGTTGTTGGCGACGCTTCTTGACT
CTGGTACCACTTCGATCCTTCTGCCATTTCTCGCTCCTTCTGAAGTTGTC
GCGTTGTCGACCTCCACTAGGTTTTTTGCCCTAGTATCCGCAACACTCAC
CCAGCTCCGGGTTGATGTGTCATCTGGTTCGGCGCCGTATCCCATACCGT
GCGACTCGTTGCACGAATGCCGAGGACTGTCGTCAGGATCGCGTCAACAA
AAATGGAGCCTTGGTGGAACCCTACCGCCGAGCTTTACCTATCTCCACGA
AGTGATGAGAGCGTCCGAAGTTGTTGAAGACGATTTCCTTCAGGGATGTG
CTTGTTTCGGCGAGTGCGAAGCCCAGTACGACGTGGACGCGGATGACAGC
AGTGGGTCGTGCCCTTGCGTCCAGCTGAATGCAACTGTGCAGAGTGGTCC
CGCGCCGCTGTTCGAGTGCCACGCTGGTTGCTCTTGCGGCCCCGCGTGCC
GACTGAGAGCAACGCAAAGACGAGGAGAAGGCGGCTGCAAGGTTCGCCCG
ATGATCAGGCTTCGCTACATGGGGGCAAAGGGTTGGGGCGCTTACCCCGT
TGACGCCGTGCCGGCGGGAACTTTCGTGGCGGACTACACCGGAGAGGTGC
TACCAATCCACGAAGCGAAGAGGAGGGTGCCCGCGTACGACCGGGATGGG
CTGAACTACGTCTTGACCACTCAGGAGTTTTTCCAGGGGTGGTCCCGCGC
CGCTGTTCGAGTGCCACGCTGGTTGCTCTTGCGGCCCCGCGTGCCGACTG
AGAGCAACGCAAAGACGAGGAGAAGGCGGCTGCAAGGTTCGCCCGATGAT
CAGGCTTCGCTACATGGGGGCAAAGGGTTGGGGCGCTTACCCCGTTGACG
CCGTGCCGGCGGGAACTTTCGTGGCGGACTACACCGGAGAGGTGCTACCA
ATCCACGAAGCGAAGAGGAGGGTGCCCGCGTACGACCGGGATGGGCTGAA
CTACGTCTTGACCACTCAGGAGTTTTTCCAGGGGGGAAAACAGGTGTGCC
AAACAATCGTTGACGCCACGACGTCTGGAAACGAGTCGAGATTTTTCAAC
CACTGTTGCGACCCCAACCTGTCCGTGTTCGTGGGAAAACAGGTGTGCCA
AACAATCGTTGACGCCACGACGTCTGGAAACGAGTCGAGATTTTTCAACC
ACTGTTGCGACCCCAACCTGTCCGTGTTCGTGATACGACGGGGCTCTTTC
CTAAGACCCCGCCTGGCTTTCTTCACCAAGAGCCGCGTGGAGGCGGGAGA
GGAATTGACGTACGACTACGGAGCCACAGGGTCGGCAGGCGGGACTGCCT
CACAAGCCAACGATGACCATAGCGGTCCCCAGCAGCAGCCGATTCACAAG
AAACCACGAACAAGAAGCAGGGCCGAGGGAGACTCTCCACGCAGAAATCG
AGGCTTGTACCGGGGCCACGGCACGTTGCAAGTGCAGAATAAGGGCGGCC
ATGGGGAGGCAGGGGCCTCCGGTGATTTTAACGGTCGTAGGAAATCGGGG
GGGATGCATGAGCTATCTTTGCGGCGACCGTGTTTATGTGGCTCGCGGCG
CTGTCGTGGGTTTTTACCCTATAACCGAGCGATCTTGTAGATACGACGGG
GCTCTTTCCTAAGACCCCGCCTGGCTTTCTTCACCAAGAGCCGCGTGGAG
GCGGGAGAGGAATTGACGTACGACTACGGAGCCACAGGGTCGGCAGGCGG
GACTGCCTCACAAGCCAACGATGACCATAGCGGTCCCCAGCAGCAGCCGA
TTCACAAGAAACCACGAACAAGAAGCAGGGCCGAGGGAGACTCTCCACGC
AGAAATCGAGGCTTGTACCGGGGCCACGGCACGTTGCAAGTGCAGAATAA
GGGCGGCCATGGGGAGGCAGGGGCCTCCGGTGATTTTAACGGTCGTAGGA
AATCGGGGGGGATGCATGAGCTATCTTTGCGGCGACCGTGTTTATGTGGC
TCGCGGCGCTGTCGTGGGTTTTTACCCTATAACCGAGCGATCTTGTAG
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