mRNA_C-linearis_contig8.15531.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15531.1
Unique NamemRNA_C-linearis_contig8.15531.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: D8LC96_ECTSI (Peroxisomal membrane protein PEX16 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC96_ECTSI)

HSP 1 Score: 590 bits (1520), Expect = 1.970e-203
Identity = 348/554 (62.82%), Postives = 388/554 (70.04%), Query Frame = 1 
Query:   70 MEQHHQNDPRAAEEGWSYAKFVMENPVAARTLESVLQYSGFFAPARFADRDLSIESGYALSSLAALAHDRILLQGHGSLGQGRDDRDRGTACFGNADGGQ------------SLDAPKRRERPSSIAIFAERMRVALAMIAHVQVVVEKLAGQHGGPQRRRQAITYLETLKAISRLLLLACTREMVMGGGAYVSGGKRRSPPRQDRNKSGGGRPWREVDLRGVRLDPPQSSEFAATTVNCSPPPSRRPPEVYTGKRSGVRLVVPPRASVIWSGRGRSNRPIGVGRAAMTSSFPS-SSSLCDGDGDGSGXIXXXXXXXXXXXXXXXXXXXXXSNSRVSFQGYG-GGQEMGAAGDSSEAANGGPPRLAREWRHQRRAHEEEGGGWGRGDALSPQGGGYGASQAWLVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGG-GAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
            MEQ  Q DPRA+EEGW YA FV  NP AART+E++L+YSGFFAPARFADRDLSIESGYALSSLAALAHD+IL+ G G  G GR  +D G A     DGGQ             LD PK RERPSS  + A+RMRVALAMIA+VQ+VVEKLA QHGGP+RR+QAI YLETLKA++RLLLLACTREMV+GGG+YVSGG RR+PP  +RNK+G    WREVDL G RL+  QSSEFA   V+  P P   PPEVYTGKRSGV+L+VPPRASV+WSGRGRSNR  GV R A T+S PS  SS    DG                           S+S  SF+G   GGQ +G  G    A++      +  WR +R A                QGG     QAWL+AGEVIHILRPL YSY C + GE+SWRPWL SL MDAAAFACTARAGG  GA++LL PI  AG          GVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFEL AEPVSRGAAGVFEGVP+LGGMAGYALNMLLYVQRHHFYTSAS
Sbjct:    1 MEQQ-QRDPRASEEGWCYANFVRHNPTAARTVETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILIHGQGG-GLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLD-PKNRERPSSTTVVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRQQAIVYLETLKALARLLLLACTREMVVGGGSYVSGGNRRTPPLGNRNKAGA---WREVDLNGARLNQAQSSEFA---VDRPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADG----------------------VFQNDSSSSSSFRGCANGGQGIGTGGSMEAASD-----ESCVWRQRREA----------------QGG-----QAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAG--------SSGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489
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BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A835Z8Q5_9STRA (Peroxisomal membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q5_9STRA)

HSP 1 Score: 231 bits (588), Expect = 5.940e-63
Identity = 185/516 (35.85%), Postives = 246/516 (47.67%), Query Frame = 1 
Query:  121 YAKFVMENPVAARTLESVLQYSGFFAPARFADRDLSIESGYALSSLAALAHDRILLQGHGSLGQGRDDRDRGTACFGNADGGQSLDAPKRRERPSSIAIFAE----RMRVALAMIAHVQVVVEKLAGQHGGPQRRRQAITYLETLKAISRLLLLACTREMVMGGGAYVSGGKRRSPPRQDRNKSG--GGRPWREVDLRGVRLDPPQSSEFAATTVNCSPPPSRRPPEVYTGKRSGVRLVVPPRASVIWSGRGRSNRPIGVGRAAMTSSFPSSSSLCDGDGDGSGXIXXXXXXXXXXXXXXXXXXXXXSNSRVSFQGYGGGQEMGAAGDSSEAANGGPPRLAREWRHQRRAHEEEGGGWGRGDALSPQGGGYGASQAWLVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLL 1650
            Y+ FV  NP  A  LESVL+YSGF APA+F +R+L +E+GYA SSLA L HD I                               +AP+++ +  S     E     +R AL ++AH++VV EK+A   GG  RRRQ IT +E  KA+ RL +LA TREM++ GG +  G    +PP + +  +G  G R    V   G+ L+     + A       PPP+   P +Y GKR G +  +P RA        R     G+ R     S P+ +  C    +GS                        S   +     GGG   GA   + E  +G   R  R W H            GR  A  P        +AWL+ GE +H +RP  YS +CG  GE +W PWL S+++D A+ ACTARA         V +R         G G+G  + P    EQ AELRRRK+ W LYL+R+PAFEL   P + GAAG F GVP+LGG+A YAL MLL
Sbjct:   10 YSAFVKANPGTANLLESVLRYSGFLAPAQFGERELLVEAGYAASSLAGLLHDGI-------------------------------NAPQQQHQQRSTGGHEEGVVATLRTALVVLAHIEVVAEKVAAASGGAVRRRQLITAIEVAKAVMRLTILALTREMLLAGGHHAPG----APPLRGQTIAGRVGSRVLSTV---GLGLE-----DRAENGTGHGPPPA---PVMYQGKRCGRKYALPARAQA------RHGSAPGL-RLGANGSAPALNG-CSSAQNGS----------------HTDMYGAASCCGLQHAACGGGHGDGAGWMAEEDEDGELERHRR-WLHA-----------GRAPAPPPP-------KAWLLLGEGLHAIRPAAYSAACGRLGEAAWAPWLLSMSVDVASRACTARA---------VEVR--------GGRGNGGALTP----EQRAELRRRKVQWVLYLLRTPAFELLLGPAATGAAGAFGGVPVLGGLASYALQMLL 415
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BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A1V9ZIW7_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.350e-17
Identity = 55/158 (34.81%), Postives = 75/158 (47.47%), Query Frame = 1 
Query: 1216 GASQAWLVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYAL-NMLLYVQRHHFYTSAS 1686
            G   +  + GE++HILRP++Y+  C    EQSW P+L S + +     C++R                             P           E RRRKM  FLYL+R+P F     P++ G A   + VPLLG +  +A+ N LLY QR HFYTSAS
Sbjct:  219 GHEDSLQLTGELLHILRPVIYAVLCQRKTEQSWLPFLASFSTEVLGILCSSRE----------------------------PSAKKASPAATEEWRRRKMCLFLYLLRNPFFSNVTHPLAEGVANATQPVPLLGRLVQFAIENGLLYYQRRHFYTSAS 348
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BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A067BFH5_SAPPC (Peroxisomal membrane protein PEX16 n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BFH5_SAPPC)

HSP 1 Score: 92.8 bits (229), Expect = 7.970e-17
Identity = 56/151 (37.09%), Postives = 76/151 (50.33%), Query Frame = 1 
Query: 1237 VAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYAL-NMLLYVQRHHFYTSAS 1686
            + GE++HILRP+VY+  C    EQSW P+L S + +     C+         S   P +A                 P + EE     RRRKM  FLYL+R+P F     P++   A   + VP+LG +  +A+ N LLY QR HFYTSAS
Sbjct:  204 LTGEILHILRPVVYAVLCQRKSEQSWVPFLASFSTEVLGLLCS---------SAEAPTKAT----------------PAVTEE----FRRRKMCLFLYLLRNPLFSSVTNPLADSVANATQPVPVLGRLIQFAIDNGLLYYQRRHFYTSAS 325
[Close]
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A1W0AC00_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC00_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.330e-16
Identity = 59/151 (39.07%), Postives = 79/151 (52.32%), Query Frame = 1 
Query: 1237 VAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYAL-NMLLYVQRHHFYTSAS 1686
            +AGEV+HILRP++Y+  C    EQSW P+L S + +    AC++ AG   +  L V                        D   A ELRRRKM   LYL+R+P F    +P++   A   + VPLLG +  +A+ N L Y QR HFYTSAS
Sbjct:  192 LAGEVLHILRPVIYAILCQRKTEQSWIPFLASFSTEILGIACSS-AGLEHSNKLSV------------------------DPLVAEELRRRKMCLLLYLLRNPFFSSATQPLADNVANATKPVPLLGRLLQFAIDNGLHYYQRRHFYTSAS 317
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BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A7R9U860_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U860_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.390e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1 
Query: 1483 EQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
            EQ  ELRRRKM W LYL+RSP F+L  EPV++    V    PL+G ++ YA+ +L+++Q HHFYTS S
Sbjct:  280 EQKEELRRRKMQWLLYLLRSPLFQLICEPVAKTTDKVLGRAPLIGSLSNYAMQLLMHIQSHHFYTSGS 347
[Close]
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: K3YTE2_SETIT (Peroxisomal membrane protein PEX16 n=27 Tax=Panicoideae TaxID=147369 RepID=K3YTE2_SETIT)

HSP 1 Score: 82.8 bits (203), Expect = 3.040e-13
Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 1 
Query: 1216 GASQAWLVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
            G +    V GEV+HI RPLVY       G +SW PWL SLA++  +          G  S    +   GG V              L   +  EL+RRKM+W LY+MR P F  + +   + A  V   VPL+G + G  + +L  VQ  + YTS S
Sbjct:  239 GGTGRLFVLGEVVHIFRPLVYVLLIRKFGIRSWTPWLVSLAVELTSL---------GIHSHATDLNHRGGKVH------------QLSSAERDELKRRKMMWALYVMRDPFFTSYTKRHLQKAEQVLNPVPLIGFLTGKLMELLEGVQTRYTYTSGS 374
[Close]
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: U5DG66_AMBTC (Peroxisomal membrane protein PEX16 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5DG66_AMBTC)

HSP 1 Score: 77.4 bits (189), Expect = 4.990e-13
Identity = 46/151 (30.46%), Postives = 68/151 (45.03%), Query Frame = 1 
Query: 1234 LVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
             + GEV+ I RPLVY       G +SW+PW+ SLA+D AA    +    GG   +L                           E+  EL+RRK+LW LYL+R P F  ++             +PL+G +    + +++  Q  + YTSAS
Sbjct:   27 FLLGEVLFITRPLVYVLFIRKHGVRSWKPWMLSLAVDFAAMGILSFVTNGGKHHIL-------------------------SSEETNELKRRKLLWALYLLRDPFFSKYSRCRIENTEKYLNPIPLVGFLTAKFVELIIGAQTRYTYTSAS 152
[Close]
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A9NWV1_PICSI (Peroxisomal membrane protein PEX16 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NWV1_PICSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.130e-13
Identity = 49/148 (33.11%), Postives = 72/148 (48.65%), Query Frame = 1 
Query: 1243 GEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
            GEV+ ILRPLVY+      G  +W+PWL SLA+D A                 +  R A  G+ GSG G        L   +  E++RR++LW  Y+MR P F  +          + + VP++G +   A+ +L+ VQ  + Y SAS
Sbjct:    2 GEVLLILRPLVYALFIRRYGLGAWKPWLVSLAVDLA--------------GTTIISRLASPGLTGSGRGYS------LSNAEKEEIKRRRLLWAFYVMRDPFFSKYTRHRLEYFEQLLKPVPVIGTLIAKAVELLVGVQTRYSYISAS 129
[Close]
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Match: A0A2T7F150_9POAL (Peroxisomal membrane protein PEX16 n=7 Tax=Panicum TaxID=4539 RepID=A0A2T7F150_9POAL)

HSP 1 Score: 82.0 bits (201), Expect = 5.440e-13
Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 1 
Query: 1216 GASQAWLVAGEVIHILRPLVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAAGGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEPVSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS 1686
            G +    V GEV+HI RPLVY       G +SW PWL SLA++  +          G  S    +   GG V              L   +  EL+RRKM+W LY+MR P F  + +   + A  V   VPL+G + G  + +L  VQ  + YTS S
Sbjct:  239 GGTGRLFVLGEVVHIFRPLVYVLLIRKFGIRSWTPWLVSLAVELTSL---------GIHSHATDLNHRGGKVH------------QLSSAERDELKRRKMMWALYVMRDPFFASYTKCHLQKAEQVLNPVPLIGFLTGKLVELLEGVQTRYTYTSGS 374
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC96_ECTSI1.970e-20362.82Peroxisomal membrane protein PEX16 n=2 Tax=Ectocar... [more]
A0A835Z8Q5_9STRA5.940e-6335.85Peroxisomal membrane protein-domain-containing pro... [more]
A0A1V9ZIW7_9STRA3.350e-1734.81Peroxisomal membrane protein PEX16 n=1 Tax=Achlya ... [more]
A0A067BFH5_SAPPC7.970e-1737.09Peroxisomal membrane protein PEX16 n=3 Tax=Saprole... [more]
A0A1W0AC00_9STRA2.330e-1639.07Peroxisomal membrane protein PEX16 n=1 Tax=Thraust... [more]
A0A7R9U860_9STRA5.390e-1452.94Peroxisomal membrane protein PEX16 n=1 Tax=Pinguio... [more]
K3YTE2_SETIT3.040e-1334.39Peroxisomal membrane protein PEX16 n=27 Tax=Panico... [more]
U5DG66_AMBTC4.990e-1330.46Peroxisomal membrane protein PEX16 n=1 Tax=Amborel... [more]
A9NWV1_PICSI5.130e-1333.11Peroxisomal membrane protein PEX16 n=1 Tax=Picea s... [more]
A0A2T7F150_9POAL5.440e-1334.39Peroxisomal membrane protein PEX16 n=7 Tax=Panicum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1099997..1103458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score591.3
Seed ortholog evalue4.7e-166
Seed eggNOG ortholog2880.D8LC96
Preferred namePEX16
KEGG koko:K13335
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000038,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005783,GO:0005789,GO:0006082,GO:0006605,GO:0006612,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007276,GO:0007283,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016557,GO:0016558,GO:0017038,GO:0019752,GO:0019953,GO:0022406,GO:0022412,GO:0022414,GO:0022615,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0031984,GO:0032501,GO:0032504,GO:0032581,GO:0032787,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042579,GO:0042760,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045046,GO:0045184,GO:0046394,GO:0046395,GO:0046907,GO:0048137,GO:0048232,GO:0048609,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0090150,GO:0098588,GO:0098805,GO:0098827,GO:0106101,GO:1901575,GO:1901576
EggNOG free text desc.ER-dependent peroxisome localization
EggNOG OGsKOG4546@1,KOG4546@2759
Ec32 ortholog descriptionPeroxisome membrane protein, Pex16
Ec32 orthologEc-14_005580.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size2069
Cds size1620
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15531.1prot_C-linearis_contig8.15531.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1100377..1103389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.3228505-UTR-C-linearis_contig8:1099996..11003761622930521.3228505-UTR-C-linearis_contig8:1099996..1100376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1099997..1100376 -
1690881112.2888358-UTR-C-linearis_contig8:1099996..11003761690881112.2888358-UTR-C-linearis_contig8:1099996..1100376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1099997..1100376 -
1622930521.4377725-UTR-C-linearis_contig8:1103389..11034581622930521.4377725-UTR-C-linearis_contig8:1103389..1103458Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1103390..1103458 -
1690881112.3482862-UTR-C-linearis_contig8:1103389..11034581690881112.3482862-UTR-C-linearis_contig8:1103389..1103458Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1103390..1103458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.3504624-CDS-C-linearis_contig8:1100376..11014591622930521.3504624-CDS-C-linearis_contig8:1100376..1101459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1100377..1101459 -
1690881112.3031409-CDS-C-linearis_contig8:1100376..11014591690881112.3031409-CDS-C-linearis_contig8:1100376..1101459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1100377..1101459 -
1622930521.366599-CDS-C-linearis_contig8:1101799..11020131622930521.366599-CDS-C-linearis_contig8:1101799..1102013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1101800..1102013 -
1690881112.3140697-CDS-C-linearis_contig8:1101799..11020131690881112.3140697-CDS-C-linearis_contig8:1101799..1102013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1101800..1102013 -
1622930521.4037406-CDS-C-linearis_contig8:1102432..11026231622930521.4037406-CDS-C-linearis_contig8:1102432..1102623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1102433..1102623 -
1690881112.3260527-CDS-C-linearis_contig8:1102432..11026231690881112.3260527-CDS-C-linearis_contig8:1102432..1102623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1102433..1102623 -
1622930521.4217827-CDS-C-linearis_contig8:1103257..11033891622930521.4217827-CDS-C-linearis_contig8:1103257..1103389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1103258..1103389 -
1690881112.3381112-CDS-C-linearis_contig8:1103257..11033891690881112.3381112-CDS-C-linearis_contig8:1103257..1103389Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1103258..1103389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15531.1

>prot_C-linearis_contig8.15531.1 ID=prot_C-linearis_contig8.15531.1|Name=mRNA_C-linearis_contig8.15531.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=540bp
MEQHHQNDPRAAEEGWSYAKFVMENPVAARTLESVLQYSGFFAPARFADR
DLSIESGYALSSLAALAHDRILLQGHGSLGQGRDDRDRGTACFGNADGGQ
SLDAPKRRERPSSIAIFAERMRVALAMIAHVQVVVEKLAGQHGGPQRRRQ
AITYLETLKAISRLLLLACTREMVMGGGAYVSGGKRRSPPRQDRNKSGGG
RPWREVDLRGVRLDPPQSSEFAATTVNCSPPPSRRPPEVYTGKRSGVRLV
VPPRASVIWSGRGRSNRPIGVGRAAMTSSFPSSSSLCDGDGDGSGSICSQ
RSPGDGGFCSTCSARDSGSNSRVSFQGYGGGQEMGAAGDSSEAANGGPPR
LAREWRHQRRAHEEEGGGWGRGDALSPQGGGYGASQAWLVAGEVIHILRP
LVYSYSCGSAGEQSWRPWLTSLAMDAAAFACTARAGGGGAVSLLVPIRAA
GGGVDGSGAGDGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELFAEP
VSRGAAGVFEGVPLLGGMAGYALNMLLYVQRHHFYTSAS*
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mRNA from alignment at C-linearis_contig8:1099997..1103458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15531.1 ID=mRNA_C-linearis_contig8.15531.1|Name=mRNA_C-linearis_contig8.15531.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3462bp|location=Sequence derived from alignment at C-linearis_contig8:1099997..1103458- (Chordaria linearis ClinC8C monoicous)
GTGGAGCCCCATGCTCGTTCAGCTAGTCCGCTAGTCCACAGTTTCTCAGG
GGGCAACACCGCAACTCGGATGGAGCAGCATCATCAGAATGATCCGCGTG
CTGCCGAAGAAGGGTGGTCTTACGCCAAATTCGTGATGGAAAACCCCGTA
GCGGCGCGCACCTTGGAGAGCGTCCTTCAATACTCCGGCTTCTTCGCTCC
GGTGAGAGCCTGCCTCCTTTTCAACTTGCTGCAGCAGATGGCAGCTGCAG
TAGACGAGCACAGACTGGGATATACAGCAGCAGTGGTAGTCGATATTTGC
ATATTTTCCCCACCAGCTCGCTTGAAATCAGGAGGATAAACAAGTGCTGG
TTGCCCCTTGTCGGTGTGCTTCCTCTGCCGCACTTGTAGTTGGCTGCTGT
CGGTGGTACATCCATGTACGGCTTTCTACAGCAACGACCAAACAATGCTG
TGCCTGAAAACAACGACCTAAATCAGGGTGATGCTGTGTACCGGGTAGTA
GAAAGATACGGCCGACAGAAGCGGATGTTTCCGCAACGCGCGCGCGGAAA
TGGGACGAGGCGGGGAGCGGCGGCGGCGGCGGCGGGGGGACGGGGGGAAA
CGGGCAGTAGTCTATGCCACACCGCCGTGCCGTTCCTGCCCGGTCCCCGT
TGCACGAAACAACAGCATGGAGCACAGCAGGCGGCACTTTCCACGCGACA
CGTCACCCACATAAGCAAACTTAATTAAGCAAGCCACCGCCACAACATTG
ATGCCTCTGTTCACTTTTTAGAGCGACCATAATTTATTTAATTTCACCAC
GCGCTGCTTTGGCTGTGTGTATGCTGTGTGTTCAGGCCCGCTTTGCAGAC
AGGGATCTTTCGATCGAGTCCGGATACGCCTTGTCTAGCCTGGCCGCCTT
GGCCCATGACCGAATCCTTCTCCAAGGGCACGGAAGTCTGGGGCAAGGGC
GAGATGACAGAGACAGGGGCACCGCTTGTTTTGGCAACGCCGACGGCGGC
CAATCGCTGGATGCTCCCAAGCGGCGGTGAGGGAATCCAGCGTACTTTTC
AGCGCTGACACAGCCTCTGTATCTTGTCCTGCGTGTGTTTTTGTGTTGAT
ACGCCGGGCAGGGTGGTCACGGGCCATAAATCGAAGTTGGTGATTTTAGC
GCAAGTGCGCGGTGGGGGTGGTCTTGTACGTTTGCGTCACTTGTGCAGGT
GTCGCCTTTTGGCTCATATCAAGTTGAACCGACATGTGTGTGCTCTTCCA
TTCCGAGCTACCCTGCAAGGGAACTCTGTCAACTCGGTGTTCACTGAACT
AGCGCTGAATCTGAACTCCTTTTGTAGATAGGGGGTTGGCGCGTTGCCGG
AATTCGAGATCGTCTTGTCGAAACCCGCCGCCTGGTTGTGATTATTGCGC
TCTTGTCTGTCCTCCGGGACGGTTTTTCGGGTGCTTTGCCGGCAGAGAGC
GACCGTCCTCGATAGCAATCTTTGCCGAGAGGATGCGCGTGGCCCTGGCC
ATGATTGCCCACGTGCAGGTCGTCGTGGAGAAACTGGCCGGGCAGCACGG
GGGGCCGCAGAGGAGGAGGCAGGCAATCACCTACCTGGAAACTCTCAAGG
CCATTAGTCGACTTCTCCTCCTTGCGTGCACGAGGGAGATGGTGATGGGA
GGTGGCGCGGTGAGAGCACTTTCCTGTTGTGACGCTTGCATTGCGACAGT
GCCTTAGATTTTCTTTCCTGCAGTCATGCTTTCTCGCAAGCTGCCGTTAT
GTGGCGATTTTGAACGAGAAGGGTTTGGGGGGGGGGCGCAGCTTCCGTTG
ATGCTGCCGCTGCGAATCCAGCCTGTTTCGCTGATGGTTATACATAGTTC
TGGATTCCTCGTTTAAGAGAGCCTTTCGCCGATTGATAAATAGGGTTACC
TCGCCGCAGGGTAGTCGTTGCTGCAACGCTCGCCGCCCTCAACACCCACA
CTCACAAGCAAGTATTTCGTGCCACCCCATCGCTCTGCCTGTACCGTAGT
ACGTGTCTGGGGGGAAACGGAGATCTCCCCCACGCCAAGACCGGAACAAG
TCAGGGGGCGGCAGACCTTGGAGAGAAGTCGACCTCAGAGGGGTACGTTT
AGATCCCCCGCAATCCTCCGAGTTTGCGGCCACCACCGTCAACTGCTCCC
CGCCCCCGTCCCGCCGCCCACCCGAGGTGTACACGGGGAAGCGGAGCGGC
GTGAGGCTGGTGGTCCCGCCGCGCGCGAGCGTCATCTGGAGCGGGCGAGG
GCGGTCGAACCGCCCGATCGGTGTCGGCAGAGCGGCCATGACTTCCTCTT
TCCCCTCTTCCTCTTCCTTGTGTGATGGAGATGGCGATGGCAGCGGCAGC
ATCTGCTCTCAGCGAAGCCCCGGCGACGGGGGTTTCTGCAGCACTTGCTC
GGCGAGGGATAGCGGCAGCAATTCTCGTGTGTCGTTTCAAGGGTACGGTG
GTGGGCAAGAGATGGGCGCAGCAGGCGATTCTAGTGAGGCGGCCAACGGG
GGGCCTCCACGCCTCGCTCGAGAATGGCGACATCAACGGCGAGCACATGA
AGAAGAGGGCGGCGGCTGGGGCCGGGGGGACGCTCTTTCACCGCAGGGGG
GAGGTTACGGCGCGTCGCAAGCGTGGCTGGTGGCGGGAGAAGTGATCCAC
ATCTTACGACCGCTGGTGTACAGCTACAGCTGCGGGTCGGCCGGGGAGCA
GTCCTGGCGCCCGTGGCTCACTTCTCTTGCCATGGACGCCGCCGCTTTCG
CCTGCACCGCGCGAGCGGGGGGCGGAGGGGCGGTGTCTCTCTTGGTCCCC
ATCAGAGCGGCCGGCGGCGGGGTGGATGGATCCGGAGCGGGTGACGGCGT
GCCTGTGCTTCCTTACCTGGACGAGGAGCAAGCGGCCGAGCTGAGGCGCC
GAAAGATGCTGTGGTTCTTGTACCTGATGCGCTCGCCGGCGTTCGAGCTG
TTTGCGGAGCCGGTCAGCAGAGGAGCCGCCGGCGTGTTTGAGGGGGTGCC
GCTCTTGGGCGGCATGGCGGGCTACGCGCTCAATATGCTGCTCTACGTGC
AGAGACATCACTTCTACACGTCGGCATCTTGAGGGCTTTTTTGCAAAGCT
TGCAGCTGTGTGCTTTAGATGGTTGCATGATGTCTGTTTTTTTTTGTTGT
TGGGTTTCGCAAGCGGCAAAGTACTCCTTGTCCGAGCCACGATTAGTTCA
ACAGCAGAGCTTACATGGGCGGCATGCTGAAAACGGCAGTATGCGGCGAC
CCTTCGCTTCGAAGTATCGAACGGGTACGGTAGCCATGCCTTTTTTGCGC
GTGAACCTGGGCTAGATGCGCCTCAAGGTGGAGGTCTGGTCTGCGAACTC
ACGAGTGTGCTCGGTTTCCGCGGGCTCTGTGTTTGAGTTTATCGGTTTTG
GGGAGCCTAAGCCCACCATCCGGAAATGCACCTGGAACAATAAAGTTTCG
CCTGAAAAAATG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1099997..1103458-

>mRNA_C-linearis_contig8.15531.1 ID=mRNA_C-linearis_contig8.15531.1|Name=mRNA_C-linearis_contig8.15531.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3240bp|location=Sequence derived from alignment at C-linearis_contig8:1099997..1103458- (Chordaria linearis ClinC8C monoicous)
ATGGAGCAGCATCATCAGAATGATCCGCGTGCTGCCGAAGAAGGGTGGTC
TTACGCCAAATTCGTGATGGAAAACCCCGTAGCGGCGCGCACCTTGGAGA
GCGTCCTTCAATACTCCGGCTTCTTCGCTCCGATGGAGCAGCATCATCAG
AATGATCCGCGTGCTGCCGAAGAAGGGTGGTCTTACGCCAAATTCGTGAT
GGAAAACCCCGTAGCGGCGCGCACCTTGGAGAGCGTCCTTCAATACTCCG
GCTTCTTCGCTCCGGCCCGCTTTGCAGACAGGGATCTTTCGATCGAGTCC
GGATACGCCTTGTCTAGCCTGGCCGCCTTGGCCCATGACCGAATCCTTCT
CCAAGGGCACGGAAGTCTGGGGCAAGGGCGAGATGACAGAGACAGGGGCA
CCGCTTGTTTTGGCAACGCCGACGGCGGCCAATCGCTGGATGCTCCCAAG
CGGCGGCCCGCTTTGCAGACAGGGATCTTTCGATCGAGTCCGGATACGCC
TTGTCTAGCCTGGCCGCCTTGGCCCATGACCGAATCCTTCTCCAAGGGCA
CGGAAGTCTGGGGCAAGGGCGAGATGACAGAGACAGGGGCACCGCTTGTT
TTGGCAACGCCGACGGCGGCCAATCGCTGGATGCTCCCAAGCGGCGAGAG
CGACCGTCCTCGATAGCAATCTTTGCCGAGAGGATGCGCGTGGCCCTGGC
CATGATTGCCCACGTGCAGGTCGTCGTGGAGAAACTGGCCGGGCAGCACG
GGGGGCCGCAGAGGAGGAGGCAGGCAATCACCTACCTGGAAACTCTCAAG
GCCATTAGTCGACTTCTCCTCCTTGCGTGCACGAGGGAGATGGTGATGGG
AGGTGGCGCGAGAGCGACCGTCCTCGATAGCAATCTTTGCCGAGAGGATG
CGCGTGGCCCTGGCCATGATTGCCCACGTGCAGGTCGTCGTGGAGAAACT
GGCCGGGCAGCACGGGGGGCCGCAGAGGAGGAGGCAGGCAATCACCTACC
TGGAAACTCTCAAGGCCATTAGTCGACTTCTCCTCCTTGCGTGCACGAGG
GAGATGGTGATGGGAGGTGGCGCGTACGTGTCTGGGGGGAAACGGAGATC
TCCCCCACGCCAAGACCGGAACAAGTCAGGGGGCGGCAGACCTTGGAGAG
AAGTCGACCTCAGAGGGGTACGTTTAGATCCCCCGCAATCCTCCGAGTTT
GCGGCCACCACCGTCAACTGCTCCCCGCCCCCGTCCCGCCGCCCACCCGA
GGTGTACACGGGGAAGCGGAGCGGCGTGAGGCTGGTGGTCCCGCCGCGCG
CGAGCGTCATCTGGAGCGGGCGAGGGCGGTCGAACCGCCCGATCGGTGTC
GGCAGAGCGGCCATGACTTCCTCTTTCCCCTCTTCCTCTTCCTTGTGTGA
TGGAGATGGCGATGGCAGCGGCAGCATCTGCTCTCAGCGAAGCCCCGGCG
ACGGGGGTTTCTGCAGCACTTGCTCGGCGAGGGATAGCGGCAGCAATTCT
CGTGTGTCGTTTCAAGGGTACGGTGGTGGGCAAGAGATGGGCGCAGCAGG
CGATTCTAGTGAGGCGGCCAACGGGGGGCCTCCACGCCTCGCTCGAGAAT
GGCGACATCAACGGCGAGCACATGAAGAAGAGGGCGGCGGCTGGGGCCGG
GGGGACGCTCTTTCACCGCAGGGGGGAGGTTACGGCGCGTCGCAAGCGTG
GCTGGTGGCGGGAGAAGTGATCCACATCTTACGACCGCTGGTGTACAGCT
ACAGCTGCGGGTCGGCCGGGGAGCAGTCCTGGCGCCCGTGGCTCACTTCT
CTTGCCATGGACGCCGCCGCTTTCGCCTGCACCGCGCGAGCGGGGGGCGG
AGGGGCGGTGTCTCTCTTGGTCCCCATCAGAGCGGCCGGCGGCGGGGTGG
ATGGATCCGGAGCGGGTGACGGCGTGCCTGTGCTTCCTTACCTGGACGAG
GAGCAAGCGGCCGAGCTGAGGCGCCGAAAGATGCTGTGGTTCTTGTACCT
GATGCGCTCGCCGGCGTTCGAGCTGTTTGCGGAGCCGGTCAGCAGAGGAG
CCGCCGGCGTGTTTGAGGGGGTGCCGCTCTTGGGCGGCATGGCGGGCTAC
GCGCTCAATATGCTGCTCTACGTGCAGAGACATCACTTCTACACGTCGGC
ATCTTGATACGTGTCTGGGGGGAAACGGAGATCTCCCCCACGCCAAGACC
GGAACAAGTCAGGGGGCGGCAGACCTTGGAGAGAAGTCGACCTCAGAGGG
GTACGTTTAGATCCCCCGCAATCCTCCGAGTTTGCGGCCACCACCGTCAA
CTGCTCCCCGCCCCCGTCCCGCCGCCCACCCGAGGTGTACACGGGGAAGC
GGAGCGGCGTGAGGCTGGTGGTCCCGCCGCGCGCGAGCGTCATCTGGAGC
GGGCGAGGGCGGTCGAACCGCCCGATCGGTGTCGGCAGAGCGGCCATGAC
TTCCTCTTTCCCCTCTTCCTCTTCCTTGTGTGATGGAGATGGCGATGGCA
GCGGCAGCATCTGCTCTCAGCGAAGCCCCGGCGACGGGGGTTTCTGCAGC
ACTTGCTCGGCGAGGGATAGCGGCAGCAATTCTCGTGTGTCGTTTCAAGG
GTACGGTGGTGGGCAAGAGATGGGCGCAGCAGGCGATTCTAGTGAGGCGG
CCAACGGGGGGCCTCCACGCCTCGCTCGAGAATGGCGACATCAACGGCGA
GCACATGAAGAAGAGGGCGGCGGCTGGGGCCGGGGGGACGCTCTTTCACC
GCAGGGGGGAGGTTACGGCGCGTCGCAAGCGTGGCTGGTGGCGGGAGAAG
TGATCCACATCTTACGACCGCTGGTGTACAGCTACAGCTGCGGGTCGGCC
GGGGAGCAGTCCTGGCGCCCGTGGCTCACTTCTCTTGCCATGGACGCCGC
CGCTTTCGCCTGCACCGCGCGAGCGGGGGGCGGAGGGGCGGTGTCTCTCT
TGGTCCCCATCAGAGCGGCCGGCGGCGGGGTGGATGGATCCGGAGCGGGT
GACGGCGTGCCTGTGCTTCCTTACCTGGACGAGGAGCAAGCGGCCGAGCT
GAGGCGCCGAAAGATGCTGTGGTTCTTGTACCTGATGCGCTCGCCGGCGT
TCGAGCTGTTTGCGGAGCCGGTCAGCAGAGGAGCCGCCGGCGTGTTTGAG
GGGGTGCCGCTCTTGGGCGGCATGGCGGGCTACGCGCTCAATATGCTGCT
CTACGTGCAGAGACATCACTTCTACACGTCGGCATCTTGA
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