mRNA_C-linearis_contig8.15516.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: D7FV16_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV16_ECTSI) HSP 1 Score: 409 bits (1052), Expect = 1.620e-138 Identity = 267/324 (82.41%), Postives = 283/324 (87.35%), Query Frame = 1
Query: 1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDERF 972
MTEFKRT E +AS+EELLGSL SD+STPAPE+L TFS AK RLE+ELSKKV+KFE+R+NETDPVSGAPRYGESMTAKV+ALGAKHQ LL+RL Q+EA+I AAVS HESREAVS+EEA+KRE E XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX REREAQEL SVAVGAAGVEDGLRRIDDAC G EKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYK+ITEAVERLK+ELDERF
Sbjct: 1 MTEFKRTAEDLASLEELLGSLGSDSSTPAPEKLATFSTAKGRLEDELSKKVSKFERRLNETDPVSGAPRYGESMTAKVVALGAKHQALLERLPQLEAEITAAVSQHESREAVSAEEARKREVERQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTREREAQELASSVAVGAAGVEDGLRRIDDACGGKPAEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKHITEAVERLKMELDERF 324
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A835YSV6_9STRA (PUB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV6_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.390e-53 Identity = 152/325 (46.77%), Postives = 190/325 (58.46%), Query Frame = 1
Query: 1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGN--STEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDER 969
MTEFKR ++ + L +L +D S AP+ K +E EL K+AKFEKR+ ETDP+SG RYGE M AKV L ++ L L E + AA++ H + XXXXXXXXXXXXXXXXXXXXX A XXXXXXXXXX REREA + SV VGAAGVE GLR + DAC G S + + AL QIL+N+ S+PEDPRFRRI+ +NE F +GRFEG +Q+LLSSGF++ VEEG ++LVM EPDL+ DMDGWT WY + + ++RL E + R
Sbjct: 1 MTEFKRVQAEVDELGARLAALEADCSDAAPDTAKVLQEIKATVEGELQGKMAKFEKRLTETDPISGQLRYGEGMRAKVAQLQQQYDALAAELRLAEGKLAAALAAHANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLAREAAVLRDKKKADXXXXXXXXXXARLAREREAAAIMASVPVGAAGVEAGLRALRDACGGGGGSAQMRKTCGALLQILQNMRSSPEDPRFRRIRCENERFAADVGRFEGAVQVLLSSGFKVVVEEGASLLVMAEPDLATDMDGWTTWYDTLKDTIDRLNDETNAR 325
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A6U3X4B2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3X4B2_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 8.030e-19 Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query: 568 EREAQELTR----SVAVGAAGVEDGLRRIDDACAGN---STEKK--AAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
E EA+E R SV G GV + I +AC N S EK+ A+ AL I + S PE+P+FRRI+RD+ F +GR GG +I ++SGFR+ EG + EP++ DMDGW++W+ + E ++ ++ E+
Sbjct: 78 EEEAREADRAFVASVPRGGDGVRAQIGLIREACRSNTDGSGEKEWNTAIGALHTIFTQIMSRPEEPKFRRIRRDHPKFLEDVGRHPGGKEIFIASGFRLDNIEGVSCFFSKEPNIEHDMDGWSDWFNELKETLQIIEEEM 217
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A7S1YSV5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YSV5_TRICV) HSP 1 Score: 98.2 bits (243), Expect = 1.170e-18 Identity = 93/287 (32.40%), Postives = 154/287 (53.66%), Query Frame = 1
Query: 148 KVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLG------------QVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTR----SVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
K +F KR+ E DP++ APRYG +V+A+ K+ L +G Q++ ++ A V +++ + ++ +K+EAE A+A + + +R XXXXXXXXXXXXXXXXXXXXXXXXXX R S+ GA GV + L + D + + + + A+ +L I +A++PE+ ++RRI+RD+ F +GR GG ++L+++GF+++ +G + EPD+ DMDGW+ W+ I + +E ++ E+
Sbjct: 120 KAGRFRKRLAERDPITDAPRYGGKTMGRVVAMLEKYDALRVGIGMAFGGNQPGEGHQMDGEVLADVMRKLAKQEKAIKDQEKQEAETGKVDVESRREA---------EALALKELQKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAFVASIKKGADGVREQLAAMRDGTSSDPSGHRKALDSLHMIFNQIAAHPEEMKYRRIRRDHPKFMEDIGRHPGGKELLIAAGFKLETLDGVSCFFSKEPDIENDMDGWSAWFDAIKQTLEIIEEEM 397
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: G4ZJA0_PHYSP (PUB domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA0_PHYSP) HSP 1 Score: 92.4 bits (228), Expect = 1.390e-17 Identity = 85/275 (30.91%), Postives = 134/275 (48.73%), Query Frame = 1
Query: 151 VAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR--MQVEEGQ--TVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELD 963
+ KF R + DPV+ PR+G +M AKV Q LL+R +V+ + L ++E A+++E E A +RE + XXXXXXXXXXXXX E E ++L S+ G G+E + + D+ G+ + ++Q L ++ N+ S+PE+ FR I ++N +F LG++ GG Q LL+ GF+ Q +E Q V V+ EPDLSED+D W+ W+ + E ++ +L+
Sbjct: 2 IEKFRARCSMVDPVTNQPRFGPNMLAKV-------QDLLRRYDEVKLAMEEEAPLRLQEAQRAAELAREQEQERHLQG-----------------ARXXXXXQQREELQRIEALAAAAXXXXXXXXXXXXXEELLRQLEEEEREKLNASIPHGKEGLERAIAMLKDST-GSEALYRQSLQKLLAVVSNICSSPENTAFRHIPKENAHFHADLGQYAGGHQCLLALGFKELQQGDEAQLRAVFVLEEPDLSEDLDAWSNWFDELKEMQSFVEYKLN 251
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A8K1FKC0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC0_PYTOL) HSP 1 Score: 90.9 bits (224), Expect = 1.710e-16 Identity = 104/290 (35.86%), Postives = 159/290 (54.83%), Query Frame = 1
Query: 103 TFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSL---HESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR-MQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
T +A + +E E+ + KF R DPV+ PR+G AKV+ + ++ L + +G E A S+ H+ ++A + XXXXXXXXXXXXXXXXXXXXX AA+ E E+ A XXXXXXXXXXX+ER Q+ SV VG G++D + ++ G+ ++ +Q L ++ NV + PE +R I +DN +F + +G+++GG + LL+ GF+ ++ E + V +M EPDLSED+D W+ W+ + + E L+ L
Sbjct: 44 TLAALEHAVEGEVDVTMEKFRARSTMVDPVTNEPRFGPKTLAKVLDMLLRYDALKENVGSGEVLRTARKSIEAFHKEQQAHAQRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRAQELEQXXIAELARLAQQKRIEREQQXXXXXXXXXXXQERLNQQ-NASVQVGVEGLQDAISTLETNL-GDPKTFRSVLQKLHVLIGNVCAAPEKTEYRHIPKDNAHFHQDIGQYQGGHECLLTMGFKELEPEPTKRVFIMEEPDLSEDLDRWSAWFDGLKDMKELLEQRL 331
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: B7FS10_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FS10_PHATC) HSP 1 Score: 87.8 bits (216), Expect = 2.560e-15 Identity = 74/270 (27.41%), Postives = 119/270 (44.07%), Query Frame = 1
Query: 151 VAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREA---VSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQ---ELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVE 942
V KF KR E DPV+G PRYG +V AL ++ L L +V + V H + A + K E E + +E E+ AA XXXXX X ++ A+ E T S+A G GV L ++ + + K AV+AL + + ++PE+ FRR++RD+ F +G++EGG ++L+++GF + + + EP++ DMDGW+ W+ + +E
Sbjct: 80 VLKFRKRRGENDPVTGNPRYGSKTMDRVNALLGSYENLTAALLRVFDEESTDVLSHGNTGASTPIIHHIRTKAEQEHAVEKARLRQEREAKNRLEAEERELTRKRIEEEQQRAAAEQHRIAEEEVXXXXXIRXAREAERRAQQANARRDREWTDSIAKGTDGVRLYLDQLVHSTIHDPQAKTRAVKALHTMFAQICAHPEEINFRRVRRDHPRFVTDIGQYEGGKELLIAAGFELGTIDDVPCYISKEPNIENDMDGWSAWFDLLKATLE 349
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A6A3IUC9_9STRA (PUB domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IUC9_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.270e-14 Identity = 105/337 (31.16%), Postives = 170/337 (50.45%), Query Frame = 1
Query: 1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLV--TFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQV----EADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRA---VAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQE---LTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEG-----QTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
M+EF++ + ++E L + ++ FS + E+ + KF R + DPV+ PR+G M AKV Q LL+R +V E D + + +++EEA K++ + XXXXXXXXXXXX + + A+ XXXX XXXXXXX XXXXR+ E +E L S+ G G+E + + ++ A + +++ +Q L ++ N+ S+PE+ FR I +DN +F LG++ GG Q LL+ GF+ ++++G + V V+ EPDLSED+D W+ W+ + E ++ +L
Sbjct: 13 MSEFRQATAHVEALEARLALVQQSVPDNTAHVILEENFSFILSAIGGEMDDMMEKFRARCSMVDPVTNQPRFGPKMLAKV-------QDLLRRYDEVKVAMEEDAPLGLQVEAKINQLTAEEAAKKQEQAARXXXXXXXXXXXXLAREQEQERLLLEAREXXXXXXXXXXXXXXXLAAXXXXXXXQRGKERAEXXXXRQLEGEERERLNASIPHGKEGLEKAIAMLRNSTASEALFRQS-LQKLLAVVSNICSSPENAAFRHIPKDNAHFHADLGQYAGGPQCLLALGFK-ELQQGDEAHPRAVFVLEEPDLSEDLDAWSNWFDELKEMQSLVESKL 340
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A2D4CIG2_PYTIN (PUB domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIG2_PYTIN) HSP 1 Score: 84.0 bits (206), Expect = 3.640e-14 Identity = 49/136 (36.03%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 565 REREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR-MQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDER 969
+ER AQ + VG G+E L + A + + + Q L I+ N+ ++PE+ FR I +DN +F +G+++GG LLS GFR M+ E G+ V VM EP+L ED+D W++W+ + ++ +K LDE+
Sbjct: 198 KERNAQAI-----VGTEGLERALSALQHAIT-DQNKYRNTFQRLFVIVSNICASPENAAFRSIPKDNAHFHEDIGQYDGGHDALLSLGFREMEPEAGKRVFVMEEPNLEEDLDKWSDWF----DGLKVMKEFLDEK 323
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A329T0Y7_9STRA (PUB domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T0Y7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.680e-14 Identity = 106/338 (31.36%), Postives = 159/338 (47.04%), Query Frame = 1
Query: 1 MTEFKRTVEQIASVEELLG----SLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLH----------ESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR--MQVEEGQ--TVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
M+EF++ + ++E L S+A + A E +F A + + ++ + KF R + DPV+ PR+G M AKV Q LL+R V+ + L + A +E RE E A XXXXXXXXXXXXXXXXXXXXXXXXXX + L S+ G G+E + + + G+ T + ++Q L ++ N+ +PE+ FR I +DN +F LG++ GG Q L + GF+ Q +E Q TV V+ EPDLSED+D W+ W++ + E ++ +L
Sbjct: 1 MSEFRQATSHVEALEARLALLQQSIADSTANGALEESFSFILAAI--DGDVDTIMEKFRLRCSMVDPVTNQPRFGPKMLAKV-------QDLLRRYDNVKLTVEEDAPLRLQVQSKLTQLTQQHATRQQEEAAREKEANEAQRAAELAKEQEKERLLHEAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERLNASIPHGIEGLEMAIAMLREGT-GSETLFRQSLQKLLAVVSNICKSPENATFRHIPKDNTHFHADLGQYPGGHQCLFAMGFKELQQGDETQPRTVFVLEEPDLSEDLDAWSTWFEELKELQNLVESKL 328 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15516.1 >prot_C-linearis_contig8.15516.1 ID=prot_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKKback to top mRNA from alignment at C-linearis_contig8:954827..959751+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15516.1 ID=mRNA_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4925bp|location=Sequence derived from alignment at C-linearis_contig8:954827..959751+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:954827..959751+ >mRNA_C-linearis_contig8.15516.1 ID=mRNA_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig8:954827..959751+ (Chordaria linearis ClinC8C monoicous)back to top |