mRNA_C-linearis_contig8.15516.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15516.1
Unique NamemRNA_C-linearis_contig8.15516.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: D7FV16_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV16_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.620e-138
Identity = 267/324 (82.41%), Postives = 283/324 (87.35%), Query Frame = 1
Query:    1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDERF 972
            MTEFKRT E +AS+EELLGSL SD+STPAPE+L TFS AK RLE+ELSKKV+KFE+R+NETDPVSGAPRYGESMTAKV+ALGAKHQ LL+RL Q+EA+I AAVS HESREAVS+EEA+KRE E    XXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXXX  REREAQEL  SVAVGAAGVEDGLRRIDDAC G   EKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYK+ITEAVERLK+ELDERF
Sbjct:    1 MTEFKRTAEDLASLEELLGSLGSDSSTPAPEKLATFSTAKGRLEDELSKKVSKFERRLNETDPVSGAPRYGESMTAKVVALGAKHQALLERLPQLEAEITAAVSQHESREAVSAEEARKREVERQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTREREAQELASSVAVGAAGVEDGLRRIDDACGGKPAEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKHITEAVERLKMELDERF 324          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A835YSV6_9STRA (PUB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.390e-53
Identity = 152/325 (46.77%), Postives = 190/325 (58.46%), Query Frame = 1
Query:    1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGN--STEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDER 969
            MTEFKR   ++  +   L +L +D S  AP+        K  +E EL  K+AKFEKR+ ETDP+SG  RYGE M AKV  L  ++  L   L   E  + AA++ H +               XXXXXXXXXXXXXXXXXXXXX                A             XXXXXXXXXX    REREA  +  SV VGAAGVE GLR + DAC G   S + +    AL QIL+N+ S+PEDPRFRRI+ +NE F   +GRFEG +Q+LLSSGF++ VEEG ++LVM EPDL+ DMDGWT WY  + + ++RL  E + R
Sbjct:    1 MTEFKRVQAEVDELGARLAALEADCSDAAPDTAKVLQEIKATVEGELQGKMAKFEKRLTETDPISGQLRYGEGMRAKVAQLQQQYDALAAELRLAEGKLAAALAAHANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLAREAAVLRDKKKADXXXXXXXXXXARLAREREAAAIMASVPVGAAGVEAGLRALRDACGGGGGSAQMRKTCGALLQILQNMRSSPEDPRFRRIRCENERFAADVGRFEGAVQVLLSSGFKVVVEEGASLLVMAEPDLATDMDGWTTWYDTLKDTIDRLNDETNAR 325          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A6U3X4B2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3X4B2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.030e-19
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  568 EREAQELTR----SVAVGAAGVEDGLRRIDDACAGN---STEKK--AAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
            E EA+E  R    SV  G  GV   +  I +AC  N   S EK+   A+ AL  I   + S PE+P+FRRI+RD+  F   +GR  GG +I ++SGFR+   EG +     EP++  DMDGW++W+  + E ++ ++ E+
Sbjct:   78 EEEAREADRAFVASVPRGGDGVRAQIGLIREACRSNTDGSGEKEWNTAIGALHTIFTQIMSRPEEPKFRRIRRDHPKFLEDVGRHPGGKEIFIASGFRLDNIEGVSCFFSKEPNIEHDMDGWSDWFNELKETLQIIEEEM 217          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A7S1YSV5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YSV5_TRICV)

HSP 1 Score: 98.2 bits (243), Expect = 1.170e-18
Identity = 93/287 (32.40%), Postives = 154/287 (53.66%), Query Frame = 1
Query:  148 KVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLG------------QVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTR----SVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
            K  +F KR+ E DP++ APRYG     +V+A+  K+  L   +G            Q++ ++ A V    +++  + ++ +K+EAE                      A+A + + +R       XXXXXXXXXXXXXXXXXXXXXXXXXX         R    S+  GA GV + L  + D  + + +  + A+ +L  I   +A++PE+ ++RRI+RD+  F   +GR  GG ++L+++GF+++  +G +     EPD+  DMDGW+ W+  I + +E ++ E+
Sbjct:  120 KAGRFRKRLAERDPITDAPRYGGKTMGRVVAMLEKYDALRVGIGMAFGGNQPGEGHQMDGEVLADVMRKLAKQEKAIKDQEKQEAETGKVDVESRREA---------EALALKELQKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAFVASIKKGADGVREQLAAMRDGTSSDPSGHRKALDSLHMIFNQIAAHPEEMKYRRIRRDHPKFMEDIGRHPGGKELLIAAGFKLETLDGVSCFFSKEPDIENDMDGWSAWFDAIKQTLEIIEEEM 397          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: G4ZJA0_PHYSP (PUB domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA0_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 1.390e-17
Identity = 85/275 (30.91%), Postives = 134/275 (48.73%), Query Frame = 1
Query:  151 VAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR--MQVEEGQ--TVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELD 963
            + KF  R +  DPV+  PR+G +M AKV       Q LL+R  +V+  +     L       ++E A+++E E                      A       +RE   +        XXXXXXXXXXXXX        E E ++L  S+  G  G+E  +  + D+  G+    + ++Q L  ++ N+ S+PE+  FR I ++N +F   LG++ GG Q LL+ GF+   Q +E Q   V V+ EPDLSED+D W+ W+  + E    ++ +L+
Sbjct:    2 IEKFRARCSMVDPVTNQPRFGPNMLAKV-------QDLLRRYDEVKLAMEEEAPLRLQEAQRAAELAREQEQERHLQG-----------------ARXXXXXQQREELQRIEALAAAAXXXXXXXXXXXXXEELLRQLEEEEREKLNASIPHGKEGLERAIAMLKDST-GSEALYRQSLQKLLAVVSNICSSPENTAFRHIPKENAHFHADLGQYAGGHQCLLALGFKELQQGDEAQLRAVFVLEEPDLSEDLDAWSNWFDELKEMQSFVEYKLN 251          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A8K1FKC0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC0_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 1.710e-16
Identity = 104/290 (35.86%), Postives = 159/290 (54.83%), Query Frame = 1
Query:  103 TFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSL---HESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR-MQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
            T +A +  +E E+   + KF  R    DPV+  PR+G    AKV+ +  ++  L + +G  E    A  S+   H+ ++A +          XXXXXXXXXXXXXXXXXXXXX   AA+   E E+   A                XXXXXXXXXXX+ER  Q+   SV VG  G++D +  ++    G+    ++ +Q L  ++ NV + PE   +R I +DN +F + +G+++GG + LL+ GF+ ++ E  + V +M EPDLSED+D W+ W+  + +  E L+  L
Sbjct:   44 TLAALEHAVEGEVDVTMEKFRARSTMVDPVTNEPRFGPKTLAKVLDMLLRYDALKENVGSGEVLRTARKSIEAFHKEQQAHAQRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRAQELEQXXIAELARLAQQKRIEREQQXXXXXXXXXXXQERLNQQ-NASVQVGVEGLQDAISTLETNL-GDPKTFRSVLQKLHVLIGNVCAAPEKTEYRHIPKDNAHFHQDIGQYQGGHECLLTMGFKELEPEPTKRVFIMEEPDLSEDLDRWSAWFDGLKDMKELLEQRL 331          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: B7FS10_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FS10_PHATC)

HSP 1 Score: 87.8 bits (216), Expect = 2.560e-15
Identity = 74/270 (27.41%), Postives = 119/270 (44.07%), Query Frame = 1
Query:  151 VAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLHESREA---VSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQ---ELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVE 942
            V KF KR  E DPV+G PRYG     +V AL   ++ L   L +V  +    V  H +  A   +      K E E                          +  +E E+   AA          XXXXX  X        ++  A+   E T S+A G  GV   L ++  +   +   K  AV+AL  +   + ++PE+  FRR++RD+  F   +G++EGG ++L+++GF +   +     +  EP++  DMDGW+ W+  +   +E
Sbjct:   80 VLKFRKRRGENDPVTGNPRYGSKTMDRVNALLGSYENLTAALLRVFDEESTDVLSHGNTGASTPIIHHIRTKAEQEHAVEKARLRQEREAKNRLEAEERELTRKRIEEEQQRAAAEQHRIAEEEVXXXXXIRXAREAERRAQQANARRDREWTDSIAKGTDGVRLYLDQLVHSTIHDPQAKTRAVKALHTMFAQICAHPEEINFRRVRRDHPRFVTDIGQYEGGKELLIAAGFELGTIDDVPCYISKEPNIENDMDGWSAWFDLLKATLE 349          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A6A3IUC9_9STRA (PUB domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IUC9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.270e-14
Identity = 105/337 (31.16%), Postives = 170/337 (50.45%), Query Frame = 1
Query:    1 MTEFKRTVEQIASVEELLGSLASDASTPAPERLV--TFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQV----EADIRAAVSLHESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRA---VAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQE---LTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFRMQVEEG-----QTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
            M+EF++    + ++E  L  +           ++   FS     +  E+   + KF  R +  DPV+  PR+G  M AKV       Q LL+R  +V    E D    + +      +++EEA K++ +   XXXXXXXXXXXX      +    + A+            XXXX   XXXXXXX        XXXXR+ E +E   L  S+  G  G+E  +  + ++ A  +  +++ +Q L  ++ N+ S+PE+  FR I +DN +F   LG++ GG Q LL+ GF+ ++++G     + V V+ EPDLSED+D W+ W+  + E    ++ +L
Sbjct:   13 MSEFRQATAHVEALEARLALVQQSVPDNTAHVILEENFSFILSAIGGEMDDMMEKFRARCSMVDPVTNQPRFGPKMLAKV-------QDLLRRYDEVKVAMEEDAPLGLQVEAKINQLTAEEAAKKQEQAARXXXXXXXXXXXXLAREQEQERLLLEAREXXXXXXXXXXXXXXXLAAXXXXXXXQRGKERAEXXXXRQLEGEERERLNASIPHGKEGLEKAIAMLRNSTASEALFRQS-LQKLLAVVSNICSSPENAAFRHIPKDNAHFHADLGQYAGGPQCLLALGFK-ELQQGDEAHPRAVFVLEEPDLSEDLDAWSNWFDELKEMQSLVESKL 340          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A2D4CIG2_PYTIN (PUB domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIG2_PYTIN)

HSP 1 Score: 84.0 bits (206), Expect = 3.640e-14
Identity = 49/136 (36.03%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  565 REREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR-MQVEEGQTVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLELDER 969
            +ER AQ +     VG  G+E  L  +  A   +  + +   Q L  I+ N+ ++PE+  FR I +DN +F   +G+++GG   LLS GFR M+ E G+ V VM EP+L ED+D W++W+    + ++ +K  LDE+
Sbjct:  198 KERNAQAI-----VGTEGLERALSALQHAIT-DQNKYRNTFQRLFVIVSNICASPENAAFRSIPKDNAHFHEDIGQYDGGHDALLSLGFREMEPEAGKRVFVMEEPNLEEDLDKWSDWF----DGLKVMKEFLDEK 323          
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Match: A0A329T0Y7_9STRA (PUB domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T0Y7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.680e-14
Identity = 106/338 (31.36%), Postives = 159/338 (47.04%), Query Frame = 1
Query:    1 MTEFKRTVEQIASVEELLG----SLASDASTPAPERLVTFSAAKVRLENELSKKVAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIRAAVSLH----------ESREAVSSEEAQKREAEXXXXXXXXXXXXXXXXXXXXXRAVAAQSILERERAHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXREREAQELTRSVAVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRRIKRDNENFQRALGRFEGGIQILLSSGFR--MQVEEGQ--TVLVMNEPDLSEDMDGWTEWYKNITEAVERLKLEL 960
            M+EF++    + ++E  L     S+A   +  A E   +F  A +  + ++   + KF  R +  DPV+  PR+G  M AKV       Q LL+R   V+  +     L             + A   +E   RE E                      A                XXXXXXXXXXXXXXXXXXXXXXXXXX     + L  S+  G  G+E  +  + +   G+ T  + ++Q L  ++ N+  +PE+  FR I +DN +F   LG++ GG Q L + GF+   Q +E Q  TV V+ EPDLSED+D W+ W++ + E    ++ +L
Sbjct:    1 MSEFRQATSHVEALEARLALLQQSIADSTANGALEESFSFILAAI--DGDVDTIMEKFRLRCSMVDPVTNQPRFGPKMLAKV-------QDLLRRYDNVKLTVEEDAPLRLQVQSKLTQLTQQHATRQQEEAAREKEANEAQRAAELAKEQEKERLLHEAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERLNASIPHGIEGLEMAIAMLREGT-GSETLFRQSLQKLLAVVSNICKSPENATFRHIPKDNTHFHADLGQYPGGHQCLFAMGFKELQQGDETQPRTVFVLEEPDLSEDLDAWSTWFEELKELQNLVESKL 328          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV16_ECTSI1.620e-13882.41PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YSV6_9STRA1.390e-5346.77PUB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6U3X4B2_9STRA8.030e-1937.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1YSV5_TRICV1.170e-1832.40Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
G4ZJA0_PHYSP1.390e-1730.91PUB domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8K1FKC0_PYTOL1.710e-1635.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B7FS10_PHATC2.560e-1527.41Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6A3IUC9_9STRA1.270e-1431.16PUB domain-containing protein n=5 Tax=Phytophthora... [more]
A0A2D4CIG2_PYTIN3.640e-1436.03PUB domain-containing protein n=2 Tax=Pythium insi... [more]
A0A329T0Y7_9STRA3.680e-1431.36PUB domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:954827..959751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.3
Seed ortholog evalue1e-112
Seed eggNOG ortholog2880.D7FV16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PUB domain
EggNOG OGs2BVEC@1,2S26D@2759
Ec32 ortholog descriptionPUB domain
Ec32 orthologEc-14_003810.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1386
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15516.1prot_C-linearis_contig8.15516.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 954827..959340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.5178363-CDS-C-linearis_contig8:954826..9549461622930518.5178363-CDS-C-linearis_contig8:954826..954946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 954827..954946 +
1690881110.8244355-CDS-C-linearis_contig8:954826..9549461690881110.8244355-CDS-C-linearis_contig8:954826..954946Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 954827..954946 +
1622930518.5342085-CDS-C-linearis_contig8:956064..9561751622930518.5342085-CDS-C-linearis_contig8:956064..956175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956065..956175 +
1690881110.8390317-CDS-C-linearis_contig8:956064..9561751690881110.8390317-CDS-C-linearis_contig8:956064..956175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956065..956175 +
1622930518.5487103-CDS-C-linearis_contig8:956520..9566461622930518.5487103-CDS-C-linearis_contig8:956520..956646Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956521..956646 +
1690881110.8509243-CDS-C-linearis_contig8:956520..9566461690881110.8509243-CDS-C-linearis_contig8:956520..956646Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956521..956646 +
1622930518.5631633-CDS-C-linearis_contig8:956913..9569941622930518.5631633-CDS-C-linearis_contig8:956913..956994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956914..956994 +
1690881110.8624592-CDS-C-linearis_contig8:956913..9569941690881110.8624592-CDS-C-linearis_contig8:956913..956994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 956914..956994 +
1622930518.5796165-CDS-C-linearis_contig8:957235..9573601622930518.5796165-CDS-C-linearis_contig8:957235..957360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 957236..957360 +
1690881110.8745966-CDS-C-linearis_contig8:957235..9573601690881110.8745966-CDS-C-linearis_contig8:957235..957360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 957236..957360 +
1622930518.591925-CDS-C-linearis_contig8:957751..9578211622930518.591925-CDS-C-linearis_contig8:957751..957821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 957752..957821 +
1690881110.8894663-CDS-C-linearis_contig8:957751..9578211690881110.8894663-CDS-C-linearis_contig8:957751..957821Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 957752..957821 +
1622930518.6092758-CDS-C-linearis_contig8:958003..9580721622930518.6092758-CDS-C-linearis_contig8:958003..958072Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 958004..958072 +
1690881110.9046202-CDS-C-linearis_contig8:958003..9580721690881110.9046202-CDS-C-linearis_contig8:958003..958072Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 958004..958072 +
1622930518.6281297-CDS-C-linearis_contig8:958564..9587021622930518.6281297-CDS-C-linearis_contig8:958564..958702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 958565..958702 +
1690881110.9183743-CDS-C-linearis_contig8:958564..9587021690881110.9183743-CDS-C-linearis_contig8:958564..958702Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 958565..958702 +
1622930518.644043-CDS-C-linearis_contig8:959205..9593401622930518.644043-CDS-C-linearis_contig8:959205..959340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 959206..959340 +
1690881110.9289217-CDS-C-linearis_contig8:959205..9593401690881110.9289217-CDS-C-linearis_contig8:959205..959340Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 959206..959340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930518.6615076-UTR-C-linearis_contig8:959340..9597511622930518.6615076-UTR-C-linearis_contig8:959340..959751Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 959341..959751 +
1690881110.9401505-UTR-C-linearis_contig8:959340..9597511690881110.9401505-UTR-C-linearis_contig8:959340..959751Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 959341..959751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15516.1

>prot_C-linearis_contig8.15516.1 ID=prot_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MTEFKRTVEQIASVEELLGSLASDASTPAPERLVTFSAAKVRLENELSKK
VAKFEKRMNETDPVSGAPRYGESMTAKVIALGAKHQTLLQRLGQVEADIR
AAVSLHESREAVSSEEAQKREAERRREKEARVRIRQAEAEEERRRAVAAQ
SILERERAHQAAEANRSREERQQAAEQEAARQAEDKRRREREAQELTRSV
AVGAAGVEDGLRRIDDACAGNSTEKKAAVQALQQILRNVASNPEDPRFRR
IKRDNENFQRALGRFEGGIQILLSSGFRMQVEEGQTVLVMNEPDLSEDMD
GWTEWYKNITEAVERLKLELDERF*
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mRNA from alignment at C-linearis_contig8:954827..959751+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15516.1 ID=mRNA_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4925bp|location=Sequence derived from alignment at C-linearis_contig8:954827..959751+ (Chordaria linearis ClinC8C monoicous)
ATGACGGAGTTTAAGCGAACAGTAGAACAGATTGCGAGTGTAGAGGAGCT CCTGGGTTCTCTCGCTAGCGATGCATCCACTCCGGCGCCTGAGAGGTTGG TTACCTTCTCCGCAGCGAAAGTGAGCTCTCGACTGTGGCTACTGTACATA GACTGGCTCTCAGGAAGGACGTAACGTATATGCAAGCATGGTAAGCAGTA CGCAGTAGCGTTGATATTGCAATCGGGTGATGCTGTTTTTTTTTGTCTTT TGGCGGACAACAATCCTCCCTCGATACCTAGACTATGTTGCAAGACGGGG AGACGATGGCACGTAGCTGCGTCTTTATCTTCTCTCTTTCGCCAACATAT CCATGCATCACCTGCGAACACGGTGACGTGAGCGTTTCGACTTGCCGACA AAAGGTTACTTTCTCTCGTCAGCATAGGAGAATCGACACGATAGATGCAT CTCCGCAGCAGCACAAGTAGCCCAAAATCCAGGAATCGTGTGTACTCAGC CTCGACGAAACGCACTCACGAACGAACAAACCGCAGTCCCCCGAACGCAT CAAGAACGGCCGTGGTGAACTCCTCCGTGGGGTGGATTGGTTGCGTATTT AAAGTTTACACGCAACCCCTCTCCCTCCATAAGCGTGTACACCGTAGCGC GCTGTAGTTATTGTTGCAAGTACCAGGGTTGGACTGCTGTGTGCGCCAAA AATGAGCACGACTTCAACGTTTACGACAAAACAGGAGTCCATATTTTAGT GATGGCACCTATCTCATGTCCAGAGGTGAATATTGTTGTCATTCGACCAT CGGGGCTTACCGCTTTTCAGCCCTCTGCCAACCTCTGCTGCCCCCCCCAC CAGCTGCCCATCCCTCGAATTGCAAAACTCTGAGATATTGCATGAGTCCC GTGAATGACGTTTTCACACGTTGGATGTTTTGTTTTGTTTTCTCGCCCAT AAGTGTTTTTTCTCGTAGCCTGCCTCCTCCTCCTCATCACTACAACTATT TAGCTAGGCTACCATCCGGGGTCACACAGGAGGGCTTGTCTCCACCTACC TCCTGCGGTGCATGCTTTTGATGTTTTTTATCGCGAGCAGGTTTAAGCAC TCCCTACCCTCGTCAACAATGAAGTCGAAAGTACGGAGTGGTAGTATTTA CTAACAAGCTATGCAGCATTGGCGTAAAAGGATGTACCAGAGGATTGGAG TTTTCAGTGGAAAAGTCTTCTGTGTCGAACCGAACCAGGTGCGGCTGGAA AATGAGCTATCCAAGAAGGTGGCGAAGTTCGAGAAGCGTATGAATGAGAC CGACCCCGTGTCGGGCGCGCCGCGATACGGAGAGAGCATGACTGCGAAGG TAGAAAGCGGGAACTTGCTGTGGTACCACTGTACGTCGTGCCTACATGTA CGTTAGAGGTAAGGGTCGAGCCATGGACTAGGCTGCGGTGAGGCTAGAGC GGCATTCGTGTTTTAGCGCGCAAGTTTCTAGAGATAACATTATCGAGTAG TCTATGGGGGATATTCGATTCCTGTAGTTTTCTTCCCTCGCCATTCACGC AGAAATTAAAGCGGCAAGCCCTACACTTCCTTTGAAATTGCGTTTTCCAC GGTGCGCTTGTTTGTGGCCCCCCCCTCTCGCCTGCTGTTGTGCTCCCTTC ATCCGATTCGCAACCCCTACCTTTTTCTGACCGCCTGACAACAGGTGATT GCCCTCGGCGCTAAGCACCAAACGTTACTCCAGCGGCTGGGGCAGGTGGA AGCCGACATTAGGGCCGCGGTTTCCCTGCACGAATCGCGCGAAGCCGTCA GCTCCGAGGAGGCGCAGAAGGTTGGTTGTCGCCTGTATTTCCTTGTCACG TGTATACGTTGATAGCCTTTTAGTCCAGTCTACCTGACCCGGTAACTTGC AACAGGAAATATAACAGGAAGTCTTACTGGTAATGACACACATGTACATT TGTCTACACATATGTAGCACGCGAGGCATCAGCGAAAGGGAGGCACCTAG TGGGTCCGGACTTGAACCACAGATATGTGTTTGCAACCTCGCGTGTATTT TTCTCCCGTTGCGCCGATTTTTGTCGCACACGCACAGCGAGAGGCGGAAC GGCGGCGGGAGAAGGAGGCGCGAGTGAGGATACGACAGGCAGAGGCTGAG GAAGAGCGACGAAGAGCCGTGAGTGAACCAAGGAGATTAGGCGTCCAATT AGATTTTTCCTCGCTGCGTGTAGATATATATTCTTCGGCAGAGTTTAAAG GCACCGTCGTGTATGCAAAGAAGAAACCCGTTTCGCTCACTTTTTTGACA CGTAAATTACCCTCACCTACGGCACCCCCCTCCCTGCCACAAGCCCATAG CACCACGCGTTTCTTGGCCTACGTTGGCTCTTTGCCGGCATGTTCGCGTG GATGAAAAGGTTGCGGCGCAAAGCATCCTCGAGCGGGAACGCGCGCATCA AGCGGCCGAGGCGAACCGCAGCCGAGAGGAGCGTCAGCAAGCAGCAGAGC AGGAAGCAGCACGGCAAGCAGAGGACAAGAGAAGGTATCTACGTCTCCTT CAGTCGTGCGATTCAATCGGGGTAGTGCTGTTCGTCTAGTATATATAGCT AGAACGTGGGTTTGCCGGTGTGTTTCGACGTTTTTACAATAAGAAGGTTC AGTGACTCGACTGCTTGTGGTTGGTTGCCGACCCAATAGCATATTTCGAA CAGGCGATAACTATGGTTTCTGCACCACGGCGGCGTTGGTTGAAGAATGC CATTTGCTTTGTTTAAGCTTGTACAGGCTTTTTTCGGCGTGCGATATTGA ACTACACCATCTTCAGTGGGACCTTCGCGTCCTCATCGCTAGAGGGTGAG GCTGACCAGTCGCGTATTCCCCGCTTTCTCTGTCTTGTCTGTCTACCTCT CTCTCTCTCCCTTCCTCCCTCTCAGGCGAGAACGAGAAGCGCAGGAATTA ACGAGATCAGTGGCGGTGGGGGCGGCTGGCGTGGAGGACGGATTGGTGAG TGATGGGTGAGTGATGAGCTGTATCAAGGGCGATGGTTTGGAGCGTGGGC CTATTTTCTGATGTCGTAGAAACTTGCAACGTCTGCTGCTTCTGCCGCTG CTCTGATCTCTGTTCTCACTTTGTTCCGACTTGTTTTTTTCGCTTCCCTG GTCTCACCGTGTTACGTTGGCTTGCAGCGGCGCATAGACGACGCGTGTGC AGGAAATTCAACGGAGAAGAAAGCCGCCGTCCAAGCGCTGCAGCAGGCAA GCTATTTGGCTGATCCACTCTGTGGCGCCTAGTAGCCCGAACTGATAGTA GCATAATCAACACAAGAGCCCGAGAGGGCTTGTTTGCACAGGATGCGGTA AACGCGCCCAACCTCGACAAAAGCATACCTGTTTCTATATCGGCGCCCGG AAATCTTTGAGTGCTCTCCTGTGTGGTGTGATACTGCTCAAACACGTAGT TACCCAATTTTGCGTGGGCTTGGCTGTATGGTAGCTATCTGCCTCCATTG CGAGTATCGTGTGCGAAATCCCCCCACACCTGACGAAAAAAAGGGCGCGT CAACTTGAATGTCATTCGCCGCGTACAGGATACAAAGCAGCCCCTTCTCC TTTATATCCCAGTAGATTTTCTTCCTCTCTTGTGCGTGATGCGATTCCCC GCACGGGCACTGAAAACGCTCATGTTTGCGTACGACGTGTGTATATCGCC ATTCGTTTTTTTGTCTTTTGCTTTTTCGGTTAGCGCAGATCTTGCGCAAC GTGGCCTCGAACCCGGAAGACCCTCGATTCCGCCGCATAAAGCGAGACAA CGAGAACTTCCAGCGCGCGCTGGGGCGCTTCGAAGGAGGCATCCAGATCC TCCTTTCGTCGGGTTTCAGGATGCAGGTAACAACTTGTTACAGTATGTAG GCGAGATGTGAGTGCCCGTGCGGTTGCTCTGTTGTTGATGCGAACCCTGG TGGGGGGATGCGAGGTACATTGAGGCCTACGCCGCCGCCCCTCCCGCCGT CCCGTCGATTGAATCGGTCCTATTGCCTCGGTGCATTATGGCCTGCGCGA AGATTTAACTGCTGTAGCACGCAGATCGATGTCTGGGCCTGCCGGCTCTG TTTGTCTTGTTTCGGTACATGAGGTGTGGAGACTACATTGAAACTGCCGA GCAGAACCGCGTTACCGCTGGTTCTCTCTCTTTTTTTGTTCTTTCGCGTT TTGTTCCTCTCTCATTTCGTGTACGCCTTTTCTCGCCCGCTTCCTTTCTT TGATTTTGATCTCTACCCTCACTAGCCTAcCCCTCGCCCCCCCCCCCAAT TGCACGTAATACCGGTAACTCATGCTGTTTTCTCTTGTTTCTCTCCATGG CCTGCGAATGGTCGGCTTTCCCGGGACAGGTGGAAGAAGGTCAGACCGTC CTGGTGATGAACGAGCCGGATCTGTCGGAAGATATGGACGGCTGGACGGA GTGGTATAAGAACATCACAGAGGCAGTAGAAAGGCTGAAACTAGAGCTTG ACGAAAGATTTTGAGGCCTGTTACAGAAACGGTGAATATTTAAGTGACTG CTAGCGCGATGCGTGATGATTGGGAGTACGGCACATATAGTGTGAGGTCT TCAGCAGTTGCGGCAGCAGCAGGAGGAGCGGCGGTGGTAGTGGTAGTGGT GGCAGGACTTGTCCGGAGCCCCAGTTGACGTGGGTAGTTGGACAAAGCGG TGCCGTCGCGGATAGCGTCCTGAACATCGATCTTGCTGCGCGTGAATCCT GAGTGCTGAGATACGTTTCGTAGAGTATTAATATCCGTTGAATGCCACCA AACGATCCACTTCGAATAACAATCTACACATATGTTGTCATTCCACCCCT TAGTTTTCATCGAACTTCTCATTGAGTCTGCAAGCAAAAAGCTCGAAGCG CGGCCGTGCACCAGGACACTTGAAC
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Coding sequence (CDS) from alignment at C-linearis_contig8:954827..959751+

>mRNA_C-linearis_contig8.15516.1 ID=mRNA_C-linearis_contig8.15516.1|Name=mRNA_C-linearis_contig8.15516.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig8:954827..959751+ (Chordaria linearis ClinC8C monoicous)
ATGACGGAGTTTAAGCGAACAGTAGAACAGATTGCGAGTGTAGAGGAGCT
CCTGGGTTCTCTCGCTAGCGATGCATCCACTCCGGCGCCTGAGAGGTTGG
TTACCTTCTCCGCAGCGAAAATGACGGAGTTTAAGCGAACAGTAGAACAG
ATTGCGAGTGTAGAGGAGCTCCTGGGTTCTCTCGCTAGCGATGCATCCAC
TCCGGCGCCTGAGAGGTTGGTTACCTTCTCCGCAGCGAAAGTGCGGCTGG
AAAATGAGCTATCCAAGAAGGTGGCGAAGTTCGAGAAGCGTATGAATGAG
ACCGACCCCGTGTCGGGCGCGCCGCGATACGGAGAGAGCATGACTGCGAA
GGTGCGGCTGGAAAATGAGCTATCCAAGAAGGTGGCGAAGTTCGAGAAGC
GTATGAATGAGACCGACCCCGTGTCGGGCGCGCCGCGATACGGAGAGAGC
ATGACTGCGAAGGTGATTGCCCTCGGCGCTAAGCACCAAACGTTACTCCA
GCGGCTGGGGCAGGTGGAAGCCGACATTAGGGCCGCGGTTTCCCTGCACG
AATCGCGCGAAGCCGTCAGCTCCGAGGAGGCGCAGAAGGTGATTGCCCTC
GGCGCTAAGCACCAAACGTTACTCCAGCGGCTGGGGCAGGTGGAAGCCGA
CATTAGGGCCGCGGTTTCCCTGCACGAATCGCGCGAAGCCGTCAGCTCCG
AGGAGGCGCAGAAGCGAGAGGCGGAACGGCGGCGGGAGAAGGAGGCGCGA
GTGAGGATACGACAGGCAGAGGCTGAGGAAGAGCGACGAAGAGCCCGAGA
GGCGGAACGGCGGCGGGAGAAGGAGGCGCGAGTGAGGATACGACAGGCAG
AGGCTGAGGAAGAGCGACGAAGAGCCGTTGCGGCGCAAAGCATCCTCGAG
CGGGAACGCGCGCATCAAGCGGCCGAGGCGAACCGCAGCCGAGAGGAGCG
TCAGCAAGCAGCAGAGCAGGAAGCAGCACGGCAAGCAGAGGACAAGAGAA
GGTTGCGGCGCAAAGCATCCTCGAGCGGGAACGCGCGCATCAAGCGGCCG
AGGCGAACCGCAGCCGAGAGGAGCGTCAGCAAGCAGCAGAGCAGGAAGCA
GCACGGCAAGCAGAGGACAAGAGAAGGCGAGAACGAGAAGCGCAGGAATT
AACGAGATCAGTGGCGGTGGGGGCGGCTGGCGTGGAGGACGGATTGGCGA
GAACGAGAAGCGCAGGAATTAACGAGATCAGTGGCGGTGGGGGCGGCTGG
CGTGGAGGACGGATTGCGGCGCATAGACGACGCGTGTGCAGGAAATTCAA
CGGAGAAGAAAGCCGCCGTCCAAGCGCTGCAGCAGCGGCGCATAGACGAC
GCGTGTGCAGGAAATTCAACGGAGAAGAAAGCCGCCGTCCAAGCGCTGCA
GCAGATCTTGCGCAACGTGGCCTCGAACCCGGAAGACCCTCGATTCCGCC
GCATAAAGCGAGACAACGAGAACTTCCAGCGCGCGCTGGGGCGCTTCGAA
GGAGGCATCCAGATCCTCCTTTCGTCGGGTTTCAGGATGCAGATCTTGCG
CAACGTGGCCTCGAACCCGGAAGACCCTCGATTCCGCCGCATAAAGCGAG
ACAACGAGAACTTCCAGCGCGCGCTGGGGCGCTTCGAAGGAGGCATCCAG
ATCCTCCTTTCGTCGGGTTTCAGGATGCAGGTGGAAGAAGGTCAGACCGT
CCTGGTGATGAACGAGCCGGATCTGTCGGAAGATATGGACGGCTGGACGG
AGTGGTATAAGAACATCACAGAGGCAGTAGAAAGGCTGAAACTAGAGCTT
GACGAAAGATTTTGAGTGGAAGAAGGTCAGACCGTCCTGGTGATGAACGA
GCCGGATCTGTCGGAAGATATGGACGGCTGGACGGAGTGGTATAAGAACA
TCACAGAGGCAGTAGAAAGGCTGAAACTAGAGCTTGACGAAAGATTTTGA
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