mRNA_C-linearis_contig8.15508.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15508.1
Unique NamemRNA_C-linearis_contig8.15508.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:881093..881597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15508.1prot_C-linearis_contig8.15508.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 881132..881509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.3002377-UTR-C-linearis_contig8:881092..8811311622930504.3002377-UTR-C-linearis_contig8:881092..881131Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 881093..881131 +
1690881103.5233388-UTR-C-linearis_contig8:881092..8811311690881103.5233388-UTR-C-linearis_contig8:881092..881131Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 881093..881131 +
1622930504.3331087-UTR-C-linearis_contig8:881509..8815971622930504.3331087-UTR-C-linearis_contig8:881509..881597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 881510..881597 +
1690881103.5432038-UTR-C-linearis_contig8:881509..8815971690881103.5432038-UTR-C-linearis_contig8:881509..881597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 881510..881597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.3130362-CDS-C-linearis_contig8:881131..8815091622930504.3130362-CDS-C-linearis_contig8:881131..881509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 881132..881509 +
1690881103.5336745-CDS-C-linearis_contig8:881131..8815091690881103.5336745-CDS-C-linearis_contig8:881131..881509Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 881132..881509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15508.1

>prot_C-linearis_contig8.15508.1 ID=prot_C-linearis_contig8.15508.1|Name=mRNA_C-linearis_contig8.15508.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp
MLVPQAIKHSLLTWGAPSVAYRRCTPIVDVVADIGEASLQDKPLLHRIVV
VVECHGCQDSPRTAALRRARLVPIHVPRKGVAVETCLHGFVREPAGRTRA
VASDSMLETEAPAPEVVADHALWCR*
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mRNA from alignment at C-linearis_contig8:881093..881597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15508.1 ID=mRNA_C-linearis_contig8.15508.1|Name=mRNA_C-linearis_contig8.15508.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=505bp|location=Sequence derived from alignment at C-linearis_contig8:881093..881597+ (Chordaria linearis ClinC8C monoicous)
AACTTCATCCAGCGCGTCCTGGTACTCCGGACTGTATTCATGCTTGTCCC
CCAGGCGATCAAACACAGTCTCCTCACCTGGGGCGCGCCTTCAGTTGCTT
ACCGAAGATGTACTCCCATCGTTGATGTCGTCGCGGACATCGGGGAGGCC
TCCCTGCAGGACAAGCCCCTGCTGCACCGCATCGTTGTAGTCGTCGAATG
TCATGGCTGCCAGGATTCTCCCCGCACCGCTGCCCTCCGGCGTGCGCGGC
TTGTCCCGATACACGTTCCGAGGAAAGGTGTCGCGGTAGAAACCTGCCTC
CATGGATTCGTGAGAGAACCTGCAGGGCGAACGCGTGCAGTCGCCTCTGA
TAGCATGTTGGAAACAGAGGCGCCTGCTCCGGAGGTAGTCGCGGACCACG
CTCTTTGGTGCCGATGACGCAGGACGCTCACGCGAAGGGCTGGTCTCCCA
ACCACCCGCCGCTGGTGCCGCCGTCGCTGGGGCCGCCCTTCGTCCCCTAA
GAGAA
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Coding sequence (CDS) from alignment at C-linearis_contig8:881093..881597+

>mRNA_C-linearis_contig8.15508.1 ID=mRNA_C-linearis_contig8.15508.1|Name=mRNA_C-linearis_contig8.15508.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig8:881093..881597+ (Chordaria linearis ClinC8C monoicous)
ATGCTTGTCCCCCAGGCGATCAAACACAGTCTCCTCACCTGGGGCGCGCC
TTCAGTTGCTTACCGAAGATGTACTCCCATCGTTGATGTCGTCGCGGACA
TCGGGGAGGCCTCCCTGCAGGACAAGCCCCTGCTGCACCGCATCGTTGTA
GTCGTCGAATGTCATGGCTGCCAGGATTCTCCCCGCACCGCTGCCCTCCG
GCGTGCGCGGCTTGTCCCGATACACGTTCCGAGGAAAGGTGTCGCGGTAG
AAACCTGCCTCCATGGATTCGTGAGAGAACCTGCAGGGCGAACGCGTGCA
GTCGCCTCTGATAGCATGTTGGAAACAGAGGCGCCTGCTCCGGAGGTAGT
CGCGGACCACGCTCTTTGGTGCCGATGAATGCTTGTCCCCCAGGCGATCA
AACACAGTCTCCTCACCTGGGGCGCGCCTTCAGTTGCTTACCGAAGATGT
ACTCCCATCGTTGATGTCGTCGCGGACATCGGGGAGGCCTCCCTGCAGGA
CAAGCCCCTGCTGCACCGCATCGTTGTAGTCGTCGAATGTCATGGCTGCC
AGGATTCTCCCCGCACCGCTGCCCTCCGGCGTGCGCGGCTTGTCCCGATA
CACGTTCCGAGGAAAGGTGTCGCGGTAGAAACCTGCCTCCATGGATTCGT
GAGAGAACCTGCAGGGCGAACGCGTGCAGTCGCCTCTGATAGCATGTTGG
AAACAGAGGCGCCTGCTCCGGAGGTAGTCGCGGACCACGCTCTTTGGTGC
CGATGA
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