mRNA_C-linearis_contig8.15505.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15505.1
Unique NamemRNA_C-linearis_contig8.15505.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:831169..831795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15505.1prot_C-linearis_contig8.15505.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 831236..831712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.224608-UTR-C-linearis_contig8:831168..8312351622930504.224608-UTR-C-linearis_contig8:831168..831235Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 831169..831235 +
1690881103.4827583-UTR-C-linearis_contig8:831168..8312351690881103.4827583-UTR-C-linearis_contig8:831168..831235Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 831169..831235 +
1622930504.2550666-UTR-C-linearis_contig8:831712..8317951622930504.2550666-UTR-C-linearis_contig8:831712..831795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 831713..831795 +
1690881103.5068698-UTR-C-linearis_contig8:831712..8317951690881103.5068698-UTR-C-linearis_contig8:831712..831795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 831713..831795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.2425127-CDS-C-linearis_contig8:831235..8317121622930504.2425127-CDS-C-linearis_contig8:831235..831712Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 831236..831712 +
1690881103.4971216-CDS-C-linearis_contig8:831235..8317121690881103.4971216-CDS-C-linearis_contig8:831235..831712Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 831236..831712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15505.1

>prot_C-linearis_contig8.15505.1 ID=prot_C-linearis_contig8.15505.1|Name=mRNA_C-linearis_contig8.15505.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MKVELATHEITPQTGASGFELIRKLQINVLSKNPDRLVYFCKKKLSPPRS
NDDNAEWQQTERKQHMNASYHTAGDALVTNPNNTRKNIQQPSLHRYRADD
ASIFYFKKKPKEKKPNKETQHVSAVNTSSSAQVSLKRQATLQSTCECSAR
GKKSRPFS*
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mRNA from alignment at C-linearis_contig8:831169..831795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15505.1 ID=mRNA_C-linearis_contig8.15505.1|Name=mRNA_C-linearis_contig8.15505.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at C-linearis_contig8:831169..831795+ (Chordaria linearis ClinC8C monoicous)
GCCAAAATCCCTGACCTTTTCTTATAGTGCGGCGAGGAAATTCGTTGTGT
AAATTAACGAGTGCGCAATGAAGGTCGAACTCGCCACACATGAAATAACA
CCCCAAACTGGAGCTTCGGGGTTTGAATTGATTCGGAAGTTACAAATCAA
CGTCCTTAGTAAGAATCCAGACAGATTAGTCTATTTTTGTAAAAAAAAAC
TGTCCCCACCCCGAAGCAACGACGACAACGCAGAATGGCAGCAAACAGAA
CGAAAACAACACATGAATGCTAGCTACCACACCGCTGGCGACGCTTTAGT
GACCAATCCAAACAACACTCGAAAAAATATACAGCAACCCTCTCTGCATC
GTTACCGGGCTGATGATGCTTCTATTTTTTACTTTAAAAAAAAACCAAAG
GAAAAAAAGCCCAACAAGGAAACGCAGCATGTATCCGCCGTCAATACTTC
GTCGTCCGCCCAGGTCAGCCTCAAAAGACAGGCGACACTCCAATCAACGT
GTGAATGCTCAGCAAGAGGCAAAAAAAGCAGACCCTTTTCCTAACCCTGA
GGTTGGCTTTGCAAGTTCCGCACGGCCCTCCCCCCCCAGCCCTCACGCAA
AACGATAATTACCCCCCACGCCTCTCC
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Coding sequence (CDS) from alignment at C-linearis_contig8:831169..831795+

>mRNA_C-linearis_contig8.15505.1 ID=mRNA_C-linearis_contig8.15505.1|Name=mRNA_C-linearis_contig8.15505.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig8:831169..831795+ (Chordaria linearis ClinC8C monoicous)
ATGAAGGTCGAACTCGCCACACATGAAATAACACCCCAAACTGGAGCTTC
GGGGTTTGAATTGATTCGGAAGTTACAAATCAACGTCCTTAGTAAGAATC
CAGACAGATTAGTCTATTTTTGTAAAAAAAAACTGTCCCCACCCCGAAGC
AACGACGACAACGCAGAATGGCAGCAAACAGAACGAAAACAACACATGAA
TGCTAGCTACCACACCGCTGGCGACGCTTTAGTGACCAATCCAAACAACA
CTCGAAAAAATATACAGCAACCCTCTCTGCATCGTTACCGGGCTGATGAT
GCTTCTATTTTTTACTTTAAAAAAAAACCAAAGGAAAAAAAGCCCAACAA
GGAAACGCAGCATGTATCCGCCGTCAATACTTCGTCGTCCGCCCAGGTCA
GCCTCAAAAGACAGGCGACACTCCAATCAACGTGTGAATGCTCAGCAAGA
GGCAAAAAAAGCAGACCCTTTTCCTAAATGAAGGTCGAACTCGCCACACA
TGAAATAACACCCCAAACTGGAGCTTCGGGGTTTGAATTGATTCGGAAGT
TACAAATCAACGTCCTTAGTAAGAATCCAGACAGATTAGTCTATTTTTGT
AAAAAAAAACTGTCCCCACCCCGAAGCAACGACGACAACGCAGAATGGCA
GCAAACAGAACGAAAACAACACATGAATGCTAGCTACCACACCGCTGGCG
ACGCTTTAGTGACCAATCCAAACAACACTCGAAAAAATATACAGCAACCC
TCTCTGCATCGTTACCGGGCTGATGATGCTTCTATTTTTTACTTTAAAAA
AAAACCAAAGGAAAAAAAGCCCAACAAGGAAACGCAGCATGTATCCGCCG
TCAATACTTCGTCGTCCGCCCAGGTCAGCCTCAAAAGACAGGCGACACTC
CAATCAACGTGTGAATGCTCAGCAAGAGGCAAAAAAAGCAGACCCTTTTC
CTAA
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