mRNA_C-linearis_contig8.15503.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15503.1
Unique NamemRNA_C-linearis_contig8.15503.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 5.670e-54
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 3
Query:  336 PGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPT-PSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            P YRWCYAEQVD+A P+  RSNGW YLGPREG+TYRRQAVF  G+R+RL FP  P+GPGH WFNSH LGGDP L DFQ WAR MLR G+VHP DADAWRAA VDV+G
Sbjct:   20 PEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAALVDVQG 126          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 5.220e-53
Identity = 90/120 (75.00%), Postives = 95/120 (79.17%), Query Frame = 3
Query:  297 ERGMALTTTALPSPGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPS-GPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            +R      TALP P YRWCYAEQVD+A P+  RSNGW YLGPREGETYRRQAVFGAGFR+RL FP    GPGH WFNSHPLGGDP L DFQ WAR MLR  +VH DDADAWRAAFVDVEG
Sbjct:    8 KRNYYAAATALPRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLPFPRLCPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAAFVDVEG 127          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.330e-50
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 3
Query:  336 PGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPT-PSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            P YRWC  EQVDEA P++TRSNGW YLGPREGETYRRQAVFGAGFR+ L FP  P GPGH WFNSHPLGGDP L DFQ WAR MLR  +VHP DADAWRAAFVDVEG
Sbjct:   19 PEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAFVDVEG 125          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.690e-47
Identity = 82/120 (68.33%), Postives = 93/120 (77.50%), Query Frame = 3
Query:  306 MALTTTALPSPG----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            MA +TTA  S      YRWCY EQVD+A P+A RSNGW Y GPR G TYRRQAVFG G+R+R+SFP+ +GPGH WFNSHP+GGDP L  FQTWAR +L  GMVHP DA+AWR AFVDVEG
Sbjct:    1 MARSTTAAVSSSRAASYRWCYVEQVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGYRIRISFPSSAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTAFVDVEG 119          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.910e-46
Identity = 81/116 (69.83%), Postives = 93/116 (80.17%), Query Frame = 3
Query:  315 TTTALPSP---GYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            +T A+ SP    YRWCY EQVD+A P+A RSNGW YLGP  G TYRRQAVFG GFRVR+SFP+  GPG+ WFNSHPLGGDP L +FQTWAR +L+ GMVHP DA+AWR AFV+VEG
Sbjct:    5 STAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGPG-GITYRRQAVFGTGFRVRISFPSSPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEG 119          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.130e-45
Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = 3
Query:  315 TTTALPSP---GYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAG---------------------FRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            +T A+ SP    YRWCY EQVD+A P+A RSNGW ++GP EG TYRRQAVFG G                     FRVR+SFP+  GPG+ WF+SHPLGGDP L +FQTW R +L+ GMVHP DA+AWR AFVDVEG
Sbjct:    5 STAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGP-EGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPSSPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTAFVDVEG 140          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 9.680e-45
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  342 YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            YRWCY EQVD+  P+A RSNGW Y+ P  G TYRRQAVFG GFR+R+SF +  GPGH WFNSHPLGGDP L +FQTWAR +L+ GMVHP +A+AWR AFVDVEG
Sbjct:   18 YRWCYMEQVDQDEPLAGRSNGWRYMEPG-GVTYRRQAVFGTGFRIRISFASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTAFVDVEG 120          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.160e-44
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 3
Query:  363 QVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVE--GVRVVLEYGQVRS 689
            +VD+A P+A RSNGW Y GPR G TYRRQAVFG GFRVR+SFP+ + PGHMWFNSHPLGGDP L +FQTWAR +L++GMVHP DA+AWR A +DV+  G+ + L   QVRS
Sbjct:    3 RVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGFRVRISFPSSARPGHMWFNSHPLGGDPNLYNFQTWARTVLQSGMVHPRDAEAWRTARIDVDTQGIPISLVNLQVRS 112          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KEQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ4_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.200e-43
Identity = 82/120 (68.33%), Postives = 90/120 (75.00%), Query Frame = 3
Query:  306 MALTTTALPSPG----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
            MA  TTA  S      YRWCY EQVD+A P+A RSNGW Y+GPR G TYRRQAVFGAG     SFP+ SGPGHMWFNSHPLGGDP L  FQTWAR +L+  +VHP DA+AWR AFVDVEG
Sbjct:    1 MARATTAPVSSSHATSYRWCYVEQVDQAAPLAGRSNGWRYMGPR-GVTYRRQAVFGAG-----SFPSSSGPGHMWFNSHPLGGDPNLYTFQTWARMVLQRDLVHPRDAEAWRTAFVDVEG 114          
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.790e-42
Identity = 82/158 (51.90%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  285 LQRTERGMALTTTALPSPG-----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDA--------DAWRAAF----------VDVEGVRVVLEYGQVRS 689
            L   ++ MA + T   S       YRWCY EQVD+A P+A RSNGW Y+GPR G TYRRQAVFG G+R+R+SFP+ +GPGH WFNSHPLGGDP L +FQTWAR +LR GMVHP DA        + WR             V+ +G+ + L   QVRS
Sbjct:    2 LAHLKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPR-GVTYRRQAVFGTGYRIRISFPSSAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDAVLVVSAADETWRVILCWASAGREIEVNTQGIPISLVDLQVRS 158          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE84_9PHAE5.670e-5474.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI5.220e-5375.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTC4_9PHAE3.330e-5079.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.690e-4768.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI1.910e-4669.83Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JU52_9PHAE1.130e-4557.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B4_9PHAE9.680e-4570.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE6.160e-4466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEQ4_9PHAE2.200e-4368.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE6.790e-4251.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:821846..822539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15503.1prot_C-linearis_contig8.15503.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 821988..822530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.1492054-UTR-C-linearis_contig8:821845..8219871622930504.1492054-UTR-C-linearis_contig8:821845..821987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 821846..821987 +
1690881103.4437795-UTR-C-linearis_contig8:821845..8219871690881103.4437795-UTR-C-linearis_contig8:821845..821987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 821846..821987 +
1622930504.1778255-UTR-C-linearis_contig8:822530..8225391622930504.1778255-UTR-C-linearis_contig8:822530..822539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 822531..822539 +
1690881103.4656777-UTR-C-linearis_contig8:822530..8225391690881103.4656777-UTR-C-linearis_contig8:822530..822539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 822531..822539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.1628644-CDS-C-linearis_contig8:821987..8225301622930504.1628644-CDS-C-linearis_contig8:821987..822530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 821988..822530 +
1690881103.4547448-CDS-C-linearis_contig8:821987..8225301690881103.4547448-CDS-C-linearis_contig8:821987..822530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 821988..822530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15503.1

>prot_C-linearis_contig8.15503.1 ID=prot_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp
MCPDQIFVSRSGTPGHTPQTDRPPHNKDQLRPWLTLRPISTINNIGPPSK
DRERNGVDNHGAAEPRLPVVLRGAGGRGAPHSNPEQRLALPGPSGGRDLQ
APGGLWGRLQGPFVLPHPFRAWTHVVQLSPPRRRSLSPGLSDLGEAHAAH
RDGPPGRRRRLAGGLRRRGGCSCCVGIRTG*
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mRNA from alignment at C-linearis_contig8:821846..822539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15503.1 ID=mRNA_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=694bp|location=Sequence derived from alignment at C-linearis_contig8:821846..822539+ (Chordaria linearis ClinC8C monoicous)
GGTAGAGATTTCCAAAACACATCAGATACTACATAATATATACGATCCAG GTCCGGTATAGACTAGACTATACCCTATCCAGGAGTATGTACATCCGATC CAGGTCGGGTCGCTCAGCCAACCGGCCCTCTTTCCGAGCCCGATGTGTCC CGATCAAATTTTTGTTTCCAGATCAGGCACACCTGGCCACACCCCACAGA CAGACAGACCGCCTCACAACAAGGATCAACTCAGGCCGTGGTTGACGCTT CGGCCCATCTCGACGATAAATAATATTGGCCCGCCTTCAAAGGACAGAGA GAGGAATGGCGTTGACAACCACGGCGCTGCCGAGCCCCGGCTACCGGTGG TGCTACGCGGAGCAGGTGGACGAGGCGCCCCCCATAGCAACCCGGAGCAA CGGCTGGCACTACCTGGGCCCTCGGGAGGGAGAGACCTACAGGCGCCAGG CGGTCTTTGGGGCCGGCTTCAGGGTCCGTTTGTCCTTCCCCACCCCTTCC GGGCCTGGACACATGTGGTTCAACTCTCACCCCCTCGGCGGAGATCCCTG TCTCCAGGACTTTCAGACTTGGGCGAGGCGCATGCTGCGCACAGGGATGG TCCACCCGGACGACGCCGACGCCTGGCGGGCGGCCTTCGTCGACGTGGAG GGTGTTCGTGTTGTGTTGGAATACGGACAGGTTAGATCTACCTG
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Coding sequence (CDS) from alignment at C-linearis_contig8:821846..822539+

>mRNA_C-linearis_contig8.15503.1 ID=mRNA_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at C-linearis_contig8:821846..822539+ (Chordaria linearis ClinC8C monoicous)
ATGTGTCCCGATCAAATTTTTGTTTCCAGATCAGGCACACCTGGCCACAC
CCCACAGACAGACAGACCGCCTCACAACAAGGATCAACTCAGGCCGTGGT
TGACGCTTCGGCCCATCTCGACGATAAATAATATTGGCCCGCCTTCAAAG
GACAGAGAGAGGAATGGCGTTGACAACCACGGCGCTGCCGAGCCCCGGCT
ACCGGTGGTGCTACGCGGAGCAGGTGGACGAGGCGCCCCCCATAGCAACC
CGGAGCAACGGCTGGCACTACCTGGGCCCTCGGGAGGGAGAGACCTACAG
GCGCCAGGCGGTCTTTGGGGCCGGCTTCAGGGTCCGTTTGTCCTTCCCCA
CCCCTTCCGGGCCTGGACACATGTGGTTCAACTCTCACCCCCTCGGCGGA
GATCCCTGTCTCCAGGACTTTCAGACTTGGGCGAGGCGCATGCTGCGCAC
AGGGATGGTCCACCCGGACGACGCCGACGCCTGGCGGGCGGCCTTCGTCG
ACGTGGAGGGTGTTCGTGTTGTGTTGGAATACGGACAGGTTAGATGTGTC
CCGATCAAATTTTTGTTTCCAGATCAGGCACACCTGGCCACACCCCACAG
ACAGACAGACCGCCTCACAACAAGGATCAACTCAGGCCGTGGTTGACGCT
TCGGCCCATCTCGACGATAAATAATATTGGCCCGCCTTCAAAGGACAGAG
AGAGGAATGGCGTTGACAACCACGGCGCTGCCGAGCCCCGGCTACCGGTG
GTGCTACGCGGAGCAGGTGGACGAGGCGCCCCCCATAGCAACCCGGAGCA
ACGGCTGGCACTACCTGGGCCCTCGGGAGGGAGAGACCTACAGGCGCCAG
GCGGTCTTTGGGGCCGGCTTCAGGGTCCGTTTGTCCTTCCCCACCCCTTC
CGGGCCTGGACACATGTGGTTCAACTCTCACCCCCTCGGCGGAGATCCCT
GTCTCCAGGACTTTCAGACTTGGGCGAGGCGCATGCTGCGCACAGGGATG
GTCCACCCGGACGACGCCGACGCCTGGCGGGCGGCCTTCGTCGACGTGGA
GGGTGTTCGTGTTGTGTTGGAATACGGACAGGTTAG
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