mRNA_C-linearis_contig8.15503.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE) HSP 1 Score: 179 bits (453), Expect = 5.670e-54 Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 3
Query: 336 PGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPT-PSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
P YRWCYAEQVD+A P+ RSNGW YLGPREG+TYRRQAVF G+R+RL FP P+GPGH WFNSH LGGDP L DFQ WAR MLR G+VHP DADAWRAA VDV+G
Sbjct: 20 PEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAALVDVQG 126
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI) HSP 1 Score: 193 bits (491), Expect = 5.220e-53 Identity = 90/120 (75.00%), Postives = 95/120 (79.17%), Query Frame = 3
Query: 297 ERGMALTTTALPSPGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPS-GPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
+R TALP P YRWCYAEQVD+A P+ RSNGW YLGPREGETYRRQAVFGAGFR+RL FP GPGH WFNSHPLGGDP L DFQ WAR MLR +VH DDADAWRAAFVDVEG
Sbjct: 8 KRNYYAAATALPRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLPFPRLCPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAAFVDVEG 127
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE) HSP 1 Score: 185 bits (470), Expect = 3.330e-50 Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 3
Query: 336 PGYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPT-PSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
P YRWC EQVDEA P++TRSNGW YLGPREGETYRRQAVFGAGFR+ L FP P GPGH WFNSHPLGGDP L DFQ WAR MLR +VHP DADAWRAAFVDVEG
Sbjct: 19 PEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAAFVDVEG 125
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.690e-47 Identity = 82/120 (68.33%), Postives = 93/120 (77.50%), Query Frame = 3
Query: 306 MALTTTALPSPG----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
MA +TTA S YRWCY EQVD+A P+A RSNGW Y GPR G TYRRQAVFG G+R+R+SFP+ +GPGH WFNSHP+GGDP L FQTWAR +L GMVHP DA+AWR AFVDVEG
Sbjct: 1 MARSTTAAVSSSRAASYRWCYVEQVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGYRIRISFPSSAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTAFVDVEG 119
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI) HSP 1 Score: 174 bits (442), Expect = 1.910e-46 Identity = 81/116 (69.83%), Postives = 93/116 (80.17%), Query Frame = 3
Query: 315 TTTALPSP---GYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
+T A+ SP YRWCY EQVD+A P+A RSNGW YLGP G TYRRQAVFG GFRVR+SFP+ GPG+ WFNSHPLGGDP L +FQTWAR +L+ GMVHP DA+AWR AFV+VEG
Sbjct: 5 STAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGPG-GITYRRQAVFGTGFRVRISFPSSPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTAFVEVEG 119
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.130e-45 Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = 3
Query: 315 TTTALPSP---GYRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAG---------------------FRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
+T A+ SP YRWCY EQVD+A P+A RSNGW ++GP EG TYRRQAVFG G FRVR+SFP+ GPG+ WF+SHPLGGDP L +FQTW R +L+ GMVHP DA+AWR AFVDVEG
Sbjct: 5 STAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGP-EGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPSSPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTAFVDVEG 140
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE) HSP 1 Score: 165 bits (418), Expect = 9.680e-45 Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 3
Query: 342 YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
YRWCY EQVD+ P+A RSNGW Y+ P G TYRRQAVFG GFR+R+SF + GPGH WFNSHPLGGDP L +FQTWAR +L+ GMVHP +A+AWR AFVDVEG
Sbjct: 18 YRWCYMEQVDQDEPLAGRSNGWRYMEPG-GVTYRRQAVFGTGFRIRISFASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTAFVDVEG 120
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE) HSP 1 Score: 157 bits (396), Expect = 6.160e-44 Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 3
Query: 363 QVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVE--GVRVVLEYGQVRS 689
+VD+A P+A RSNGW Y GPR G TYRRQAVFG GFRVR+SFP+ + PGHMWFNSHPLGGDP L +FQTWAR +L++GMVHP DA+AWR A +DV+ G+ + L QVRS
Sbjct: 3 RVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGFRVRISFPSSARPGHMWFNSHPLGGDPNLYNFQTWARTVLQSGMVHPRDAEAWRTARIDVDTQGIPISLVNLQVRS 112
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5KEQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ4_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.200e-43 Identity = 82/120 (68.33%), Postives = 90/120 (75.00%), Query Frame = 3
Query: 306 MALTTTALPSPG----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDADAWRAAFVDVEG 653
MA TTA S YRWCY EQVD+A P+A RSNGW Y+GPR G TYRRQAVFGAG SFP+ SGPGHMWFNSHPLGGDP L FQTWAR +L+ +VHP DA+AWR AFVDVEG
Sbjct: 1 MARATTAPVSSSHATSYRWCYVEQVDQAAPLAGRSNGWRYMGPR-GVTYRRQAVFGAG-----SFPSSSGPGHMWFNSHPLGGDPNLYTFQTWARMVLQRDLVHPRDAEAWRTAFVDVEG 114
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE) HSP 1 Score: 161 bits (408), Expect = 6.790e-42 Identity = 82/158 (51.90%), Postives = 100/158 (63.29%), Query Frame = 3
Query: 285 LQRTERGMALTTTALPSPG-----YRWCYAEQVDEAPPIATRSNGWHYLGPREGETYRRQAVFGAGFRVRLSFPTPSGPGHMWFNSHPLGGDPCLQDFQTWARRMLRTGMVHPDDA--------DAWRAAF----------VDVEGVRVVLEYGQVRS 689
L ++ MA + T S YRWCY EQVD+A P+A RSNGW Y+GPR G TYRRQAVFG G+R+R+SFP+ +GPGH WFNSHPLGGDP L +FQTWAR +LR GMVHP DA + WR V+ +G+ + L QVRS
Sbjct: 2 LAHLKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPR-GVTYRRQAVFGTGYRIRISFPSSAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDAVLVVSAADETWRVILCWASAGREIEVNTQGIPISLVDLQVRS 158 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15503.1 >prot_C-linearis_contig8.15503.1 ID=prot_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp MCPDQIFVSRSGTPGHTPQTDRPPHNKDQLRPWLTLRPISTINNIGPPSKback to top mRNA from alignment at C-linearis_contig8:821846..822539+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15503.1 ID=mRNA_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=694bp|location=Sequence derived from alignment at C-linearis_contig8:821846..822539+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:821846..822539+ >mRNA_C-linearis_contig8.15503.1 ID=mRNA_C-linearis_contig8.15503.1|Name=mRNA_C-linearis_contig8.15503.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at C-linearis_contig8:821846..822539+ (Chordaria linearis ClinC8C monoicous)back to top |