mRNA_C-linearis_contig8.15501.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI) HSP 1 Score: 311 bits (797), Expect = 4.120e-105 Identity = 165/192 (85.94%), Postives = 168/192 (87.50%), Query Frame = 2
Query: 77 MSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
MSQSKRKAWDAT+QASGH PTR TKRASGRTVVLSKSMRVVD+ETRNQVKDARLEALEADNYTED GGEQDDEFALDEDDERGD R R K KNKGEKDPWKERKFKSLHQVLYELTNEL YPGGATA+SIEAP SK PPR FCSVCGYHGLYTCTRCGSRFCSSKC EQHKETRCLKFAS
Sbjct: 1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGD-RPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.880e-37 Identity = 90/195 (46.15%), Postives = 117/195 (60.00%), Query Frame = 2
Query: 77 MSQSKRKAWDATMQASGHA---PTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
MS +KR AWD M +G +K KR+SGR VLSK+M+VVD+ETR +V+DARLEALEADNY E+ G E D+ + E++ R ++ + NK K+ + +++ YE +N G L+ A S P R FCSVCGY GLYTCTRCG R+CSSKC+E HKETRCLKFA+
Sbjct: 1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSN-------GPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.110e-31 Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 2
Query: 92 RKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDP---WKERKFKSLHQVLYELTNELCVYPGGATAL---SIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
RK W+ TM+A G +++R+S R +S+ +RVVD ETR V++ARL+ALEADNY E+ + D +D ++E + + +XXXXXXXXXXX KDP WK+RK+K L QV+YE + GA ++ S S+ PPR FCSVCGY G + C RCG R+C +C E HKETRC+KF +
Sbjct: 9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVAQDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHKWKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.800e-31 Identity = 84/197 (42.64%), Postives = 116/197 (58.88%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASGH-APTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDER---GDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATA--LSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
+ +++ ++ WD TM +SG AP KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E G++D F LD+D+ + + + +G+++ RK KSL Q ++E ++ P +T LS S PPR FC VCG YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 1 MSAKNAKRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRI------VRKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.180e-30 Identity = 84/207 (40.58%), Postives = 112/207 (54.11%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASGHA---PTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKE--------RKFKSLHQVLYELTNELCVYPGGATALSIE-----APDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
+ +++ ++ WD TM +SG A + S KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E G +D F LD+DD+ K K K K + RK KSL Q+++E + G ++ I +K PPR FC VCG YTC RCGS+FC +C QHKET CLKF
Sbjct: 1 MSAKNAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDDA-----------KKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD------GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.880e-28 Identity = 84/210 (40.00%), Postives = 116/210 (55.24%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASG-------HAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKD-PWKE------RKFKSLHQVLYELTNELCVYPGGATALS-----IEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
+ +++ ++ WD TM +SG H P KR SGRT+ +SK+M+ VD+ETR QV++ARL+ALEADNY E+ +D F LDEDD+ K K KG P + RK KSL +++E + V PG + ++ ++ P K PPR FC VCG +Y+C RCGS+FC +C QHKET CLKF
Sbjct: 1 MSTKNAKRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDDA-------VAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGD--VAPGNDSVINYVTAAVKPP--KTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.020e-26 Identity = 87/192 (45.31%), Postives = 121/192 (63.02%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASGH-APTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
+ +++ ++ WD TM++SG AP + KR SGRTV +SK+M++VD+ETR QV++ARL+ALEADNY E Q + +D F L ED XXXXXXXXX + RK KSL Q+++E + + +++ P K+PPR FC+VCG+ Y C RCGS+FCS +C +QHKET CLKF
Sbjct: 1 MSAKNAKRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVL-EDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC) HSP 1 Score: 110 bits (274), Expect = 4.650e-26 Identity = 86/206 (41.75%), Postives = 109/206 (52.91%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKE-------RKFKSLHQVLYELTNELCVYPG-GATALSIEAPDSKQPPRPFCSVCGY------HGLYTCTRCGSRFCSSKCSEQHKETRCLKFA 649
+ S++ ++ WD TM +SG A KR SGR V +SK+M+ VD+ETR QV++ARL+ALEADNY E + DDE EDD G KGK K P RK KSL Q+++E E G G ++ + PPR FC VCGY Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct: 1 MSSKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVG-------PKKSSKSRAKGKAKAPVVPISSSGRRRVVRKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.510e-25 Identity = 87/224 (38.84%), Postives = 113/224 (50.45%), Query Frame = 2
Query: 74 IMSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELCVYPGGATALSIEAPDSKQPPRPFCSVCGY------HGL------------------YTCTRCGSRFCSSKCSEQHKETRCLKF 646
+ S++ ++ WD TM +SG A + KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E +D++ +++D K K+KG P RK KSL +++E T E P TA A K PPR FC VCGY H YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 1 MSSKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDD-------SGTPSKKPLKSRAKAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD) HSP 1 Score: 108 bits (269), Expect = 2.810e-25 Identity = 81/193 (41.97%), Postives = 110/193 (56.99%), Query Frame = 2
Query: 92 RKAWDAT-MQASGHAPTRK---STKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDD---ERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNEL-CVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
+K W+ T ++ + A T K TKR SGRTV LSK+M+ VD+ETR V++ARL+ALEADNY D + DD A D DD + GD K + K K+ K KSL Q+++E V P +++ A S +P R FC VCG+ +Y+CTRCGSR+C KC ++HKE+ CLKF
Sbjct: 8 KKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDD--ANDVDDMYIDDGDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15501.1 >prot_C-linearis_contig8.15501.1 ID=prot_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp MSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVback to top mRNA from alignment at C-linearis_contig8:786927..790296- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15501.1 ID=mRNA_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3370bp|location=Sequence derived from alignment at C-linearis_contig8:786927..790296- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:786927..790296- >mRNA_C-linearis_contig8.15501.1 ID=mRNA_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig8:786927..790296- (Chordaria linearis ClinC8C monoicous)back to top |