mRNA_C-linearis_contig8.15501.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15501.1
Unique NamemRNA_C-linearis_contig8.15501.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 4.120e-105
Identity = 165/192 (85.94%), Postives = 168/192 (87.50%), Query Frame = 2
Query:   77 MSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
            MSQSKRKAWDAT+QASGH PTR  TKRASGRTVVLSKSMRVVD+ETRNQVKDARLEALEADNYTED GGEQDDEFALDEDDERGD R R           K KNKGEKDPWKERKFKSLHQVLYELTNEL  YPGGATA+SIEAP SK PPR FCSVCGYHGLYTCTRCGSRFCSSKC EQHKETRCLKFAS
Sbjct:    1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGD-RPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.880e-37
Identity = 90/195 (46.15%), Postives = 117/195 (60.00%), Query Frame = 2
Query:   77 MSQSKRKAWDATMQASGHA---PTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
            MS +KR AWD  M  +G       +K  KR+SGR  VLSK+M+VVD+ETR +V+DARLEALEADNY E+ G E D+ +   E++ R   ++            +  NK      K+   + +++  YE +N       G   L+  A  S  P R FCSVCGY GLYTCTRCG R+CSSKC+E HKETRCLKFA+
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSN-------GPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.110e-31
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 2
Query:   92 RKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDP---WKERKFKSLHQVLYELTNELCVYPGGATAL---SIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS 652
            RK W+ TM+A G      +++R+S R   +S+ +RVVD ETR  V++ARL+ALEADNY E+   + D    +D ++E  + + +XXXXXXXXXXX       KDP   WK+RK+K L QV+YE   +      GA ++   S     S+ PPR FCSVCGY G + C RCG R+C  +C E HKETRC+KF +
Sbjct:    9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVAQDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHKWKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.800e-31
Identity = 84/197 (42.64%), Postives = 116/197 (58.88%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASGH-APTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDER---GDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATA--LSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
            + +++ ++ WD TM +SG  AP     KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E   G++D  F LD+D+ +      + +           +G+++        RK KSL Q ++E   ++   P  +T   LS     S  PPR FC VCG    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    1 MSAKNAKRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRI------VRKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.180e-30
Identity = 84/207 (40.58%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASGHA---PTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKE--------RKFKSLHQVLYELTNELCVYPGGATALSIE-----APDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
            + +++ ++ WD TM +SG A     + S KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E   G  +D F LD+DD+                  K K K  K    +        RK KSL Q+++E   +      G ++  I         +K PPR FC VCG    YTC RCGS+FC  +C  QHKET CLKF
Sbjct:    1 MSAKNAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDDA-----------KKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD------GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.880e-28
Identity = 84/210 (40.00%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASG-------HAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKD-PWKE------RKFKSLHQVLYELTNELCVYPGGATALS-----IEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
            + +++ ++ WD TM +SG       H P     KR SGRT+ +SK+M+ VD+ETR QV++ARL+ALEADNY E+     +D F LDEDD+                  K K KG    P  +      RK KSL  +++E   +  V PG  + ++     ++ P  K PPR FC VCG   +Y+C RCGS+FC  +C  QHKET CLKF
Sbjct:    1 MSTKNAKRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDDA-------VAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGD--VAPGNDSVINYVTAAVKPP--KTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.020e-26
Identity = 87/192 (45.31%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASGH-APTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
            + +++ ++ WD TM++SG  AP +   KR SGRTV +SK+M++VD+ETR QV++ARL+ALEADNY E Q  + +D F L ED         XXXXXXXXX      +        RK KSL Q+++E   +         + +++ P  K+PPR FC+VCG+   Y C RCGS+FCS +C +QHKET CLKF
Sbjct:    1 MSAKNAKRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVL-EDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC)

HSP 1 Score: 110 bits (274), Expect = 4.650e-26
Identity = 86/206 (41.75%), Postives = 109/206 (52.91%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKE-------RKFKSLHQVLYELTNELCVYPG-GATALSIEAPDSKQPPRPFCSVCGY------HGLYTCTRCGSRFCSSKCSEQHKETRCLKFA 649
            + S++ ++ WD TM +SG A      KR SGR V +SK+M+ VD+ETR QV++ARL+ALEADNY E    + DDE    EDD  G                KGK K    P          RK KSL Q+++E   E     G G   ++     +  PPR FC VCGY         Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct:    1 MSSKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVG-------PKKSSKSRAKGKAKAPVVPISSSGRRRVVRKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.510e-25
Identity = 87/224 (38.84%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   74 IMSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRXXXXXXXXXXXKGKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELCVYPGGATALSIEAPDSKQPPRPFCSVCGY------HGL------------------YTCTRCGSRFCSSKCSEQHKETRCLKF 646
            + S++ ++ WD TM +SG A  +   KR SGRTV +SK+M+ VD+ETR QV++ARL+ALEADNY E     +D++  +++D                    K K+KG   P          RK KSL  +++E   T E    P   TA    A   K PPR FC VCGY      H                    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    1 MSSKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDD-------SGTPSKKPLKSRAKAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214          
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD)

HSP 1 Score: 108 bits (269), Expect = 2.810e-25
Identity = 81/193 (41.97%), Postives = 110/193 (56.99%), Query Frame = 2
Query:   92 RKAWDAT-MQASGHAPTRK---STKRASGRTVVLSKSMRVVDQETRNQVKDARLEALEADNYTEDQGGEQDDEFALDEDD---ERGDGRQRXXXXXXXXXXXKGKNKGEKDPWKERKFKSLHQVLYELTNEL-CVYPGGATALSIEAPDSKQPPRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKF 646
            +K W+ T ++ +  A T K    TKR SGRTV LSK+M+ VD+ETR  V++ARL+ALEADNY  D   + DD  A D DD   + GD               K +    K   K+ K KSL Q+++E       V P     +++ A  S +P R FC VCG+  +Y+CTRCGSR+C  KC ++HKE+ CLKF
Sbjct:    8 KKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDD--ANDVDDMYIDDGDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J5_ECTSI4.120e-10585.94HIT-type domain-containing protein n=2 Tax=Ectocar... [more]
W7TJ72_9STRA1.880e-3746.15Zinc finger, HIT-type n=1 Tax=Nannochloropsis gadi... [more]
A0A7S1U8Q5_9STRA1.110e-3145.60Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A485KXM9_9STRA3.800e-3142.64Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
W4G490_9STRA4.180e-3040.58HIT-type domain-containing protein n=7 Tax=Aphanom... [more]
A0A024TKA6_9STRA2.880e-2840.00HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A6G0X8S1_9STRA2.020e-2645.31HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A067BTG0_SAPPC4.650e-2641.75HIT-type domain-containing protein n=3 Tax=Saprole... [more]
A0A1V9YMM7_9STRA1.510e-2538.84Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3X0J0_GLOUD2.810e-2541.97HIT-type domain-containing protein n=1 Tax=Globisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:786927..790296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.9
Seed ortholog evalue1.6e-84
Seed eggNOG ortholog2880.D7G8J5
Preferred nameZNHIT1
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
EggNOG free text desc.regulation of histone deacetylation
EggNOG OGsKOG3362@1,KOG3362@2759
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-14_003240.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Exons6
Model size763
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15501.1prot_C-linearis_contig8.15501.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 787035..790220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930516.932568-UTR-C-linearis_contig8:786926..7870341622930516.932568-UTR-C-linearis_contig8:786926..787034Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 786927..787034 -
1690881109.9267142-UTR-C-linearis_contig8:786926..7870341690881109.9267142-UTR-C-linearis_contig8:786926..787034Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 786927..787034 -
1622930517.0805235-UTR-C-linearis_contig8:790220..7902961622930517.0805235-UTR-C-linearis_contig8:790220..790296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 790221..790296 -
1690881110.0149162-UTR-C-linearis_contig8:790220..7902961690881110.0149162-UTR-C-linearis_contig8:790220..790296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 790221..790296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930516.9521348-CDS-C-linearis_contig8:787034..7872351622930516.9521348-CDS-C-linearis_contig8:787034..787235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 787035..787235 -
1690881109.9441571-CDS-C-linearis_contig8:787034..7872351690881109.9441571-CDS-C-linearis_contig8:787034..787235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 787035..787235 -
1622930516.97481-CDS-C-linearis_contig8:787738..7877841622930516.97481-CDS-C-linearis_contig8:787738..787784Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 787739..787784 -
1690881109.95494-CDS-C-linearis_contig8:787738..7877841690881109.95494-CDS-C-linearis_contig8:787738..787784Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 787739..787784 -
1622930516.9966035-CDS-C-linearis_contig8:788539..7886701622930516.9966035-CDS-C-linearis_contig8:788539..788670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 788540..788670 -
1690881109.9651139-CDS-C-linearis_contig8:788539..7886701690881109.9651139-CDS-C-linearis_contig8:788539..788670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 788540..788670 -
1622930517.0180337-CDS-C-linearis_contig8:789240..7892941622930517.0180337-CDS-C-linearis_contig8:789240..789294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 789241..789294 -
1690881109.9750836-CDS-C-linearis_contig8:789240..7892941690881109.9750836-CDS-C-linearis_contig8:789240..789294Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 789241..789294 -
1622930517.037862-CDS-C-linearis_contig8:789783..7898421622930517.037862-CDS-C-linearis_contig8:789783..789842Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 789784..789842 -
1690881109.9909673-CDS-C-linearis_contig8:789783..7898421690881109.9909673-CDS-C-linearis_contig8:789783..789842Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 789784..789842 -
1622930517.0632627-CDS-C-linearis_contig8:790132..7902201622930517.0632627-CDS-C-linearis_contig8:790132..790220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 790133..790220 -
1690881110.005833-CDS-C-linearis_contig8:790132..7902201690881110.005833-CDS-C-linearis_contig8:790132..790220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 790133..790220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15501.1

>prot_C-linearis_contig8.15501.1 ID=prot_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp
MSQSKRKAWDATMQASGHAPTRKSTKRASGRTVVLSKSMRVVDQETRNQV
KDARLEALEADNYTEDQGGEQDDEFALDEDDERGDGRQRGRSRAAKAAGS
KGKNKGEKDPWKERKFKSLHQVLYELTNELCVYPGGATALSIEAPDSKQP
PRPFCSVCGYHGLYTCTRCGSRFCSSKCSEQHKETRCLKFAS*
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mRNA from alignment at C-linearis_contig8:786927..790296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15501.1 ID=mRNA_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3370bp|location=Sequence derived from alignment at C-linearis_contig8:786927..790296- (Chordaria linearis ClinC8C monoicous)
GGGAGACGCGAGACTGGGACAGGCTCAGTCGCGGCAGCCGGGGGGGGCGG CAAGAGGGCAACAACTTTGGGGCATTATGTCTCAAAGCAAGAGGAAGGCA TGGGATGCCACGATGCAAGCCAGCGGCCATGCGCCAACACGCAAATCAAC GAAACGAGCTTCAGGTGAACAAACCTGACAAACCACCCCCTGGTGTGTAC CGAAGCTGCTATCTTTCGTATCCTGCATCTCGCAGTAGATAGGCTCGTGA CACGAAAGAGGAGGACACCTTACTCTCTGCGGTTCCCTTTCCCCTATTTG GCCTTCCTCGGTCTTTGAGGAAGTTATCGATGGTGTATTATTCGACTCTC TCTCTCCCCCTCTGTCCTGCTCTCTTCGCTCCGCTGTCACATGACACCCA CTGCCCCCGACTCTCTACCCGACATCGTACGACATCGTACACTGAACACG AAAGGACGGACGGTGGTTCTCAGCAAGTCGATGCGAGTGGTGGACCAGGA AACTCGGAATCAGGTTTGTGCGCTGTGTAGACTCGTTGGTTTGCATAACC TGCAGCAGTGTACCTCAAGCGCGCAGGCGCCGCCTTTGGTAGTCAGCAGT GCTGCTGGAGTCCCGTGCATGAGAAATCGTTGTCCCCTGAAAACTGCCAG GCCTAGGGTTAGGACTGCCATGTGTGTACCAACGTCCTACTTTACCTACA ATTCCACCGCTGCTGTTTGGACAAGCTCGCGCTTTCGACGATCATGAATT CAAGGACCTCACTGCCGTTCTCAGACTACGTAACTTGGTGGCGCTCACCG GACTACGCCTGTCTTGATATTCCCTTGTTGGTGGATCAATGCCGCGCTGC TAGCATGATTCACTGCCGCCGTTAGGTGTGTGTCTTCCCCTTTCCCCCCC CGTTCGTTTGCCCGTGCTCCTTCTGGCTGACGTCGAATCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCGCCCTCTCCCGTCGATTGTGTCATGTC AGGTCAAAGACGCTCGCCTAGAGGCATTAGAGGCCGATAACTACACCGAA GACCAGGTAAGGGGGGGGGGGGGGAAGGGGGCCCATTCGTTTTCATGCAG TGCTTTCTCTCCGCGTGTGGCATCTCTTTTCGACTTTGATTGACGGCTTG GCGAACTATAATAGCAAAGTGCTGCTTCCAACGCCCTTCGTACAGTACGG GCAAGCAAACCTTTTGACTCTCTTTTGTTTCTCTGGCCAAAGCGTGTCGC TTGCTTTTTCAATCATCGCTGAACCCTTTTTTGCACGGAGCATACGTTTT TATTAGGTTTGCTTTCCCTTCGAAGCTACCGCGCCCCCAGAAGAAAAGGT GGTACTTGATAAAACAACACCTGTTGTACGTTGTGGGACAAGAGATATTT TTATAGATGGAGGTATGAATGCTGCGCTGCGCGCAGGAGTAAACGGACCC CAGCTGCAGATATATGGTGTATCATGCATATCAATCGACGCCCCACTGCC CTTAGCATATTCGATCCCTTGTTTCTTCCTTGTTTCTTTCCTGCCGAGAC GCAAACCGAAAAATGACCCGCGACGATGCACAACTCGAACGAACACCCCT GCACCCGTTGTGTTTGTCTTCGCCAGGGTGGGGAGCAGGATGACGAGTTC GCGCTAGACGAGGATGACGAGCGAGGGGACGGCAGGCAGAGGGGTAGGAG CAGGGCGGCAAAGGCCGCGGGAAGCAAGGGGAAGAACAAGGGAGAGAAAG ACCCATGGTGAGACTTGAGACTCGGGCTTTTCGCGTAGTTTACGGCCAGA GACGGCAACCCGGAGACGGGCTGAGCGGGGCGTGCTTTGCTTTGTTGCCC ACCTCTACTCTGTTTTGTCACATGGACCTTTCTTTCACCATGCCTGTTCG TTGCCGAGAACGAGCGTGGGTGGGCCAAGTCGGGGGGGCGGGGGTCTTGC ACTGCTTGCAAGCCCTGTAGTCGCTTTTTTCACGCACAGGAGCATGTTTG AGGTGAGGGTGAAAACCTTGCACTCCTGTCGCGGCTCGCGCTCTGTGCCG CCAAGACGGCCGTGTCTACGCCGACCGATGAAAGAGATGCGAGCCTTACG TGCAATGATAGATGGTATTCTAGGATGCGAAAAAAGCAGTATAATAGCAC CACTTTTTGGTTCTTGCGCGAAGCGAAGGTTAAGGTCTACCAATGCGATG AGAAAACAAGCGTAGGCCGCCGGGTGTTGGTCGCTTTTGCTCCAGCAGTG CAAAACGCCGTTGTGGCAGGCCGCGCGATGGCCTCTCCCACCTCCACCAA ACCATGCAACGGAGCGTCGATTTTCATGTTTTTGCAAGGTGGTGCCGCAG GGCCGCATGTGTGAGAAATGTCGGTTTGCCCTTGTCTTCAGCAGACGCTC GATTTGTACACCGCCGTGCAATAATTTAACCCCCGTGCCTTTCCTCTTTC TCGCCGCTCTGCCCTCTCTTGGCAACGTTTCTTTGTTGCTGCTGCGGCTG CAACCAATGCAGGAAGGAACGCAAGTTCAAGAGCCTGCACCAGGTCCTCT ACGAACTGGTAAGATCTCTCTTTCTCTCTCTCTTTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTGCCATTATCTTCTCTCGTATCTCAA ACGCCGGAGGCACACTGCTGTAAACGAACCTTTTCCAGTGGTCTTTCGTT TGGCGTTGTGGAGCTCGTGCCTAGCTGTTGTTCGCGTGAGGGACGGATGG CACGCTGACCTCATCCGCAATCGTCCCTCGAGAGTCCTCTAAGCAACATG GAGCTTGCTCGACAAAGGACGTTGATCCCCGGAAGCTTTTCGCGATAGGT TTAGATGCGTTTTAAAAGCCTTTTGTCGCATTTTCGCGGAAAAGGTGGCT CACGGTGGGACATCGCAGGCAGTTAAGCCCCTCTTCCCCCGCCATAGCGG CTCCCATCATACCCACCCACCGCCCCGTTTAAAGTCAAAAATTATCCCCC ATGTTCCCGCTGGTACGCTGCTTCGTGTTTCTTTTCTTTTTGTTCCTCTC TTGCGCTCAAGACGAACGAGCTGTGCGTGTATCCCGGCGGAGCGACGGCC TTGTCCATCGAGGCGCCCGATTCCAAGCAGCCGCCGCGGCCCTTCTGTTC GGTGTGCGGCTACCATGGGCTCTACACGTGCACGCGCTGCGGGTCCAGGT TCTGCAGCTCCAAGTGCTCCGAGCAGCACAAGGAGACCCGCTGCCTCAAG TTCGCGTCGTAAAGCATAAAGTACGCAGATGGTGCTGTTTTTCTGTGTGC TTGGTGGATTTTTTTTTGTTTTTTTTGTAGCGGAGGTGTTGTGCGTGTTG AGAACGTGCAGTAGTGTCGG
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Coding sequence (CDS) from alignment at C-linearis_contig8:786927..790296-

>mRNA_C-linearis_contig8.15501.1 ID=mRNA_C-linearis_contig8.15501.1|Name=mRNA_C-linearis_contig8.15501.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig8:786927..790296- (Chordaria linearis ClinC8C monoicous)
ATGTCTCAAAGCAAGAGGAAGGCATGGGATGCCACGATGCAAGCCAGCGG
CCATGCGCCAACACGCAAATCAACGAAACGAGCTTCAGATGTCTCAAAGC
AAGAGGAAGGCATGGGATGCCACGATGCAAGCCAGCGGCCATGCGCCAAC
ACGCAAATCAACGAAACGAGCTTCAGGACGGACGGTGGTTCTCAGCAAGT
CGATGCGAGTGGTGGACCAGGAAACTCGGAATCAGGACGGACGGTGGTTC
TCAGCAAGTCGATGCGAGTGGTGGACCAGGAAACTCGGAATCAGGTCAAA
GACGCTCGCCTAGAGGCATTAGAGGCCGATAACTACACCGAAGACCAGGT
CAAAGACGCTCGCCTAGAGGCATTAGAGGCCGATAACTACACCGAAGACC
AGGGTGGGGAGCAGGATGACGAGTTCGCGCTAGACGAGGATGACGAGCGA
GGGGACGGCAGGCAGAGGGGTAGGAGCAGGGCGGCAAAGGCCGCGGGAAG
CAAGGGGAAGAACAAGGGAGAGAAAGACCCATGGGTGGGGAGCAGGATGA
CGAGTTCGCGCTAGACGAGGATGACGAGCGAGGGGACGGCAGGCAGAGGG
GTAGGAGCAGGGCGGCAAAGGCCGCGGGAAGCAAGGGGAAGAACAAGGGA
GAGAAAGACCCATGGAAGGAACGCAAGTTCAAGAGCCTGCACCAGGTCCT
CTACGAACTGGAAGGAACGCAAGTTCAAGAGCCTGCACCAGGTCCTCTAC
GAACTGACGAACGAGCTGTGCGTGTATCCCGGCGGAGCGACGGCCTTGTC
CATCGAGGCGCCCGATTCCAAGCAGCCGCCGCGGCCCTTCTGTTCGGTGT
GCGGCTACCATGGGCTCTACACGTGCACGCGCTGCGGGTCCAGGTTCTGC
AGCTCCAAGTGCTCCGAGCAGCACAAGGAGACCCGCTGCCTCAAGTTCGC
GTCGTAAACGAACGAGCTGTGCGTGTATCCCGGCGGAGCGACGGCCTTGT
CCATCGAGGCGCCCGATTCCAAGCAGCCGCCGCGGCCCTTCTGTTCGGTG
TGCGGCTACCATGGGCTCTACACGTGCACGCGCTGCGGGTCCAGGTTCTG
CAGCTCCAAGTGCTCCGAGCAGCACAAGGAGACCCGCTGCCTCAAGTTCG
CGTCGTAA
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