mRNA_C-linearis_contig8.15496.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15496.1
Unique NamemRNA_C-linearis_contig8.15496.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.720e-58
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 410
            MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTY+ALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.660e-50
Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
            MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTYAALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNP++
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH)

HSP 1 Score: 159 bits (402), Expect = 1.640e-45
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
            MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ YAAL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNP+
Sbjct:    1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPN 96          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.560e-42
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
            MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL  ED  TY+AL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNP+
Sbjct:   38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.070e-42
Identity = 72/93 (77.42%), Postives = 85/93 (91.40%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 395
            MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+YAAL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct:    1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.040e-39
Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
            MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL  ED   Y+AL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNP+
Sbjct:   10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN)

HSP 1 Score: 143 bits (360), Expect = 3.040e-39
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
            MSSEVEETL+RIQSHRGVKGVLI++  G+PIRSNL  E+T+TYAAL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ   S
Sbjct:    1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.870e-37
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 3
Query:  117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 395
            MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL  ++T TYAAL+SQL+ KA  +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5)

HSP 1 Score: 132 bits (333), Expect = 6.170e-35
Identity = 63/98 (64.29%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  114 LMSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
             + SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T  Y+ALISQL++KA  ++R LD  + LTFLRLRS KHEIMVAPDKDYILIVIQ+P++
Sbjct:   13 FLMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNA 110          
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG)

HSP 1 Score: 132 bits (331), Expect = 7.110e-35
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 3
Query:  123 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP 401
            SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L    T  Y+ALI+QL+ KA  +VR LD  + LTFLR+RS KHEIMVAPDK+YILIVIQNP
Sbjct:    2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNP 94          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G586_ECTSI2.720e-5898.98Dynein light chain roadblock n=2 Tax=Ectocarpus Ta... [more]
A0A836CL08_9STRA3.660e-5085.57Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A482SBS1_9ARCH1.640e-4579.17Roadblock/LC7 domain-containing protein n=1 Tax=ar... [more]
A0A7S2FUR4_9STRA2.560e-4275.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1U8Y1_9STRA9.070e-4277.42Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2STB6_9STRA1.040e-3969.79Dynein light chain roadblock n=1 Tax=Rhizochromuli... [more]
F0Y4U8_AURAN3.040e-3971.13Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A8J2WXW4_9STRA1.870e-3770.97Dynein light chain roadblock n=1 Tax=Pelagomonas c... [more]
C5KNE1_PERM56.170e-3564.29Roadblock, putative n=1 Tax=Perkinsus marinus (str... [more]
A0A1Y2ATV3_9FUNG7.110e-3568.82Dynein light chain roadblock n=3 Tax=Neocallimasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:748745..749928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.7
Seed ortholog evalue3.4e-46
Seed eggNOG ortholog2880.D7G586
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionputative: flagellar outer dynein arm light chain LC7
Ec32 orthologEc-14_006610.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons2
Model size993
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15496.1prot_C-linearis_contig8.15496.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 749325..749621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.8522716-UTR-C-linearis_contig8:748744..7493241622930515.8522716-UTR-C-linearis_contig8:748744..749324Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 748745..749324 -
1690881109.243944-UTR-C-linearis_contig8:748744..7493241690881109.243944-UTR-C-linearis_contig8:748744..749324Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 748745..749324 -
1622930515.885383-UTR-C-linearis_contig8:749621..7496801622930515.885383-UTR-C-linearis_contig8:749621..749680Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 749622..749680 -
1690881109.2799444-UTR-C-linearis_contig8:749621..7496801690881109.2799444-UTR-C-linearis_contig8:749621..749680Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 749622..749680 -
1622930515.902282-UTR-C-linearis_contig8:749871..7499281622930515.902282-UTR-C-linearis_contig8:749871..749928Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 749872..749928 -
1690881109.292138-UTR-C-linearis_contig8:749871..7499281690881109.292138-UTR-C-linearis_contig8:749871..749928Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 749872..749928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.869976-CDS-C-linearis_contig8:749324..7496211622930515.869976-CDS-C-linearis_contig8:749324..749621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 749325..749621 -
1690881109.2663674-CDS-C-linearis_contig8:749324..7496211690881109.2663674-CDS-C-linearis_contig8:749324..749621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 749325..749621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15496.1

>prot_C-linearis_contig8.15496.1 ID=prot_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=99bp
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQL
SFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK*
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mRNA from alignment at C-linearis_contig8:748745..749928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15496.1 ID=mRNA_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at C-linearis_contig8:748745..749928- (Chordaria linearis ClinC8C monoicous)
ACGCAGGCACCCTCGCACGGAGAGCTATCTGTGTCTGCACCACCGTCGAT AGCCGAGGTGAGTGCTTGTTGCGTGAATGGGGTGAAGACTGCTGTGGGCG AGAGAGAGAAAACGAGCACTATACTCAAAAAGTTCTGAGCGAACAGGTGT TGCTTCCAACTTGCAATCCATCGATCCATTTGACTCCGATCCTTCTACAC AACCGTTTTGTGCTCTCTCTGTCTGGGCTCGCCGTCCGGAAACGTCAGTG ACAGCTAGGTCCAGGGGAGTTTGAGGAAGTGAGGACTAGAAGGGAGGCGC AGGCTTGATGTCGTCCGAGGTAGAGGAGACGCTGAAGCGAATTCAGTCAC ATCGAGGAGTCAAGGGGGTGCTGATCTTGAACAACGACGGGATCCCAATA CGGTCCAACCTTAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAG CCAGCTGAGCTTCAAGGCTAACGGAATCGTGCGTACTTTAGATGAGGCCG ACAGCCTGACCTTTCTACGACTGCGCAGCACGAAGCACGAGATCATGGTG GCGCCGGACAAAGACTACATCTTGATCGTGATACAGAACCCGCACTCGAA GTAGGGGCACGGCGGTAGTGGCCCGCAGGCTCTTGGAAGCTGATGTTGTA TGATATATTTTGGAAGGTTGCCGATGTTTCATGGGGACAGGGAACAGCCG AGGCTATCTGGCGAGTTTTTCGTTTTATCTAGTGATGTCAGAAACCATGG TTGCTGCTATATAGGCAGGGTCCTTGTTGCACCTTGCTTGTCCACGTCTG TATGTTTGAAGAGTTGACATCAGCCGTGAGCTCGGGAGCACTGGTCTAGA TATGCAGTGAGTTTCGATTTGATGTAGGGGTTGGCCTCGACGTTCGCGTT CATTTTCAGAAGTACGATTCAAGCTAATCAAGTCTTCGACGGATCGTGAA CGTTCAACGGATCGTGAGACTTTTATTAGTTGGGATTTTGGCGGTGCCCG GCTGTTTTCGTTGGAGCGACTTGCTGTCCCAGCCAGCCAACGGCAGAGAT TCAGGTGTTGTGCACATCTTGTCTCGGCACATCTAAATACACCCCTTTTT AAGCTAGTTCGTTGGAACTAGCAACCCATTCAGATACGGTTTTGTCCACT ATGCCAGCCGGTAGTTGCGCGGCCGAGAGACACG
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Coding sequence (CDS) from alignment at C-linearis_contig8:748745..749928-

>mRNA_C-linearis_contig8.15496.1 ID=mRNA_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at C-linearis_contig8:748745..749928- (Chordaria linearis ClinC8C monoicous)
ATGTCGTCCGAGGTAGAGGAGACGCTGAAGCGAATTCAGTCACATCGAGG
AGTCAAGGGGGTGCTGATCTTGAACAACGACGGGATCCCAATACGGTCCA
ACCTTAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAGCCAGCTG
AGCTTCAAGGCTAACGGAATCGTGCGTACTTTAGATGAGGCCGACAGCCT
GACCTTTCTACGACTGCGCAGCACGAAGCACGAGATCATGGTGGCGCCGG
ACAAAGACTACATCTTGATCGTGATACAGAACCCGCACTCGAAGTAGATG
TCGTCCGAGGTAGAGGAGACGCTGAAGCGAATTCAGTCACATCGAGGAGT
CAAGGGGGTGCTGATCTTGAACAACGACGGGATCCCAATACGGTCCAACC
TTAGCCAAGAGGACACCGACACGTACGCGGCGCTCATCAGCCAGCTGAGC
TTCAAGGCTAACGGAATCGTGCGTACTTTAGATGAGGCCGACAGCCTGAC
CTTTCTACGACTGCGCAGCACGAAGCACGAGATCATGGTGGCGCCGGACA
AAGACTACATCTTGATCGTGATACAGAACCCGCACTCGAAGTAG
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