mRNA_C-linearis_contig8.15496.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI) HSP 1 Score: 192 bits (487), Expect = 2.720e-58 Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 410
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTY+ALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.660e-50 Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTYAALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNP++
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH) HSP 1 Score: 159 bits (402), Expect = 1.640e-45 Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ YAAL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNP+
Sbjct: 1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPN 96
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.560e-42 Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL ED TY+AL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNP+
Sbjct: 38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA) HSP 1 Score: 149 bits (377), Expect = 9.070e-42 Identity = 72/93 (77.42%), Postives = 85/93 (91.40%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 395
MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+YAAL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct: 1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.040e-39 Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPH 404
MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL ED Y+AL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNP+
Sbjct: 10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN) HSP 1 Score: 143 bits (360), Expect = 3.040e-39 Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
MSSEVEETL+RIQSHRGVKGVLI++ G+PIRSNL E+T+TYAAL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ S
Sbjct: 1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.870e-37 Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 3
Query: 117 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 395
MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL ++T TYAAL+SQL+ KA +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5) HSP 1 Score: 132 bits (333), Expect = 6.170e-35 Identity = 63/98 (64.29%), Postives = 82/98 (83.67%), Query Frame = 3
Query: 114 LMSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHS 407
+ SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T Y+ALISQL++KA ++R LD + LTFLRLRS KHEIMVAPDKDYILIVIQ+P++
Sbjct: 13 FLMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNA 110
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG) HSP 1 Score: 132 bits (331), Expect = 7.110e-35 Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 3
Query: 123 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP 401
SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L T Y+ALI+QL+ KA +VR LD + LTFLR+RS KHEIMVAPDK+YILIVIQNP
Sbjct: 2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNP 94 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15496.1 >prot_C-linearis_contig8.15496.1 ID=prot_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=99bp MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYAALISQLback to top mRNA from alignment at C-linearis_contig8:748745..749928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15496.1 ID=mRNA_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1184bp|location=Sequence derived from alignment at C-linearis_contig8:748745..749928- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:748745..749928- >mRNA_C-linearis_contig8.15496.1 ID=mRNA_C-linearis_contig8.15496.1|Name=mRNA_C-linearis_contig8.15496.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at C-linearis_contig8:748745..749928- (Chordaria linearis ClinC8C monoicous)back to top |