mRNA_C-linearis_contig8.15495.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: D7G587_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G587_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 5.080e-137 Identity = 197/246 (80.08%), Postives = 228/246 (92.68%), Query Frame = 2
Query: 662 EVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP 1399
E V YDE+AVEWM+ QLCMYQTR ALISNPLA KGYKLREIVPSPRGL+CA+STEE+RMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKE AKWKNCPTCQGPIDY LYEAYGGGAGKAVSA+LNNSRATR+AIG++A +V ++SP++H +IVR+LTSGV WKNYHRLTFIV+LPLPLQIMGIRFLM W+ +QL+L+E+MVR+ LTD+ES+ILESRLPVT++V +DG E+ VPY++P
Sbjct: 38 EPVLYDEKAVEWMMHQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRVAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGDEIAVPYRKP 283
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 3.990e-130 Identity = 237/392 (60.46%), Postives = 271/392 (69.13%), Query Frame = 2
Query: 263 MVRPRPLESSAFVLVLGTLLAYRGGIEAV------HFQPHRVSGAVGWVHRRAGAAGAGQSITAELVPCERSTTAVAKARPSRDEAQQQSLGMRIATVLRGGRFMRQSCAGDEEIEDQENDEQXXXVLGXXXXXXXXXX-------EVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP 1399
M RPRP E+S FVLVLG+LLA RGGIEAV H Q H G GW +RR XXX XXXXXXXXXX E V YDE+AVEWM+QQLCMYQTR ALISNPLA KGYKLREIVPSPRGL+CA+STEE+RMDCRMYVEAEV VAPCKCKGTQKWISFSALNSERRKE KWKNCPTCQGPIDY LYEAYGGGAGKAVSA+LNNSRATR+AIG++A +V ++SP++H +IVR+LTSGV WKNYHRLTFIV+LPLPLQIMGIRFLM W+ +QL+L+E+M+R+ LTD+ES+ILESRLPVT++V +DG EV VPY++P
Sbjct: 4 MARPRPWETSTFVLVLGSLLAGRGGIEAVAPFQSRHVQ-HTRRGGAGWAYRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEVESVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCALSTEERRMDCRMYVEAEV----VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMLRQSLTDIESRILESRLPVTVEVREDGDEVAVPYRKP 390
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A836CP79_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP79_9STRA) HSP 1 Score: 205 bits (522), Expect = 5.980e-58 Identity = 106/231 (45.89%), Postives = 145/231 (62.77%), Query Frame = 2
Query: 671 PYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGK 1363
P D+E EW++QQ MYQTRVAL+S L KGY L+ ++P P GLICA ST+E + CR+Y+E E G KVVAPC+CKG+Q+WI+ ALN +RR+EP KW CPTCQ IDY LYEA+ G + +AVLNN A R A+ + + +I+R++ S V W N+ R+ + LPL I+G ++L K + LE VR LT+VES ++E LP T+ +
Sbjct: 71 PVDKEMAEWIMQQASMYQTRVALLSVELDKKGYGLKGVIPQPPGLICAKSTKEHPLRCRVYMEPEEGSKVVAPCRCKGSQRWIAIRALNQQRRREPLKWSKCPTCQAHIDYSLYEAHMAGLDRVPTAVLNNRGAGRAALAXXXXXXXXXXALIFQGLIIRVVISKVVWGNWDRIQGVWGQSLPLYILGFQWLRKRAAAAFARLEEWVRGELTEVESAVMERTLPETVSAAE 301
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S3XMD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMD3_HETAK) HSP 1 Score: 178 bits (451), Expect = 1.410e-47 Identity = 112/281 (39.86%), Postives = 158/281 (56.23%), Query Frame = 2
Query: 536 VLRGGRFMRQSCAGDEEIEDQE--NDEQXXXVLGXXXXXXXXXXEVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYK--LREIVPSPRG--LICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATR--MAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTID 1354
RGG R+ DE ED E DE+ E+ YD++ W+L Q+ +Y R AL++ L G+ L IV RG L A+STEEK M CR+Y EAE G KVVAPCKCKGTQKWI +SALN + R EP K+KNC TC+ PIDYKLY ++ G+ + +SA+L + +A GL G A ++ ++H ++ R L S W+NYHR +V+ PLPL+I ++ K + L +R+ L + ES +++ LPVT++
Sbjct: 46 TFRGGAVGRKKRKNDEVDEDAELYEDEE----------------ELTSYDQDTALWLLNQMHVYHARTALLAKELRKTGHLTGLAAIVQEERGNKLDIALSTEEKPMPCRIYYEAEAGSKVVAPCKCKGTQKWIQWSALNQQWRNEPHKFKNCNTCKTPIDYKLYYSFAAGSTQWLSALLERPARLQALVAAGLAGG--AALLGLLLHGLVARALLSAALWRNYHRALGVVYAPLPLKIFVLQLTYKPVLKSFDRLVKRLRDRLVEWESALVQQALPVTVN 308
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: W7TIY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIY3_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.930e-24 Identity = 76/238 (31.93%), Postives = 125/238 (52.52%), Query Frame = 2
Query: 680 EEAVEWMLQQLCMYQTRVALISNPLAAK-----------GYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVV---ALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTI 1351
EE W+ Q+ YQ +AL + L + G+K E P ++ A +CR++ E ++G K+VAPC C+GT KW+ F+ +N RR++P + C TC IDY+ Y+ +G + VS L+++ R L+A V L V P+ +++R+LTS +FW+ + +V+ PLPL+I+ +++ + + E VRE L + ES +LE LPVT+
Sbjct: 199 EEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCL--LLASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV 431
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A4D9D8S7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8S7_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.980e-23 Identity = 62/174 (35.63%), Postives = 103/174 (59.20%), Query Frame = 2
Query: 839 DCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVV---ALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTI 1351
+CR++ E ++G K+VAPC C+GT KW+ F+ +N RR++P + C TC IDY+ Y+ +G + VS L+++ R L+A V L V P+ +++R+LTS +FW+ + +V+ PLPL+I+ +++ + + E VRE L + ES +LE LPVT+
Sbjct: 46 ECRIHGEVDMGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCL--LLASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV 216
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: K0T0A2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0A2_THAOC) HSP 1 Score: 90.1 bits (222), Expect = 2.150e-15 Identity = 75/265 (28.30%), Postives = 124/265 (46.79%), Query Frame = 2
Query: 680 EEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIV----------PSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIV--SPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP*EEG 1411
E+ +++ Q +YQ R ++ LAA+G L I+ P CA+ST+E+ C +AE KVVAP GT +WIS +ALN RR +P K + Q + ++ L + G S +L+ + LV V++L++ P++ + RIL S FW + I PL+++ +++ K LEN VRE++ D+E +ILE +P+T+ VG + + + + EEG
Sbjct: 234 EKVLKFRTDQQLLYQLRSTYLTEMLAARGVPLPTIISVSTPDGEKPPEKVDWDCALSTDEEPKSCLYSFDAEPDTKVVAPL---GTDQWISLTALNRLRRTDPTKVEPMWHSQYGVLQSWFADSSEFSLLQHVGIKGFFVSSVLLDGGNGMALRSLLVLSVLSLLILFMPLIEYTVQRILVSAPFWNRWTFWGRIARAGFPLKLLIGQYVWKAVALAFRKLENEVREFVVDLECEILEDSVPITVGVGAEESDNEIRGETENEEG 495
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S0Y6J6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y6J6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.570e-14 Identity = 71/257 (27.63%), Postives = 126/257 (49.03%), Query Frame = 2
Query: 674 YDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREI--VPSPRGLI--------CAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAK----WKNCPTCQ----GPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGK--DGKEVTV 1384
YD+ M QQ+ + Q R +S LA + + + V +P G + CA+STE C + E E G K+V P + T KWI+ +ALN RR +P+K W + + GP + G G +S +L+ +R + + +GLV + + + PV+ ++ R L S W + VH+ LP +++ ++ + + + L +++++ L D+E QILE +P+T+ G D ++VT+
Sbjct: 116 YDKLQAYRMKQQVLL-QLRATFLSEALAKRSLPIPSLKDVSTPDGKVPPKKVDWDCAMSTEADPKHCLISYEPEPGSKLVVPTELASTDKWITLAALNRLRRDDPSKVEPMWSDRYAIRSSWFGPNSRYSLLQHVGPKGVVLSTLLDGNRLSTV-VGLVLLFLVVQLMPVIEILVNRFLVSSFLWSRWISWYRYVHIGLPFKLLILQTVYSYVAKGFAALVSVIKDKLVDLECQILEETIPLTMGEGSEDDFQDVTI 370
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S2PIB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIB9_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.490e-12 Identity = 70/247 (28.34%), Postives = 112/247 (45.34%), Query Frame = 2
Query: 680 EEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIV----------PSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVS--PVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDV 1357
E+ ++ +Q +YQ R +S LA +G L I P CA+ TEE C +AE KVVAP GT +WIS SALN RR +P K + + I ++ + + G S +L+ + L+ V+++I++ P++ ++ RI+ S FW + +V PL+++ + K LEN VREY D+E +ILE +P+T+ V
Sbjct: 110 EKLSKYRTEQQILYQIRSTYLSEMLALRGVPLPTITSVSTADGDKPPEKVDWDCAMCTEEDPKSCLYSFDAEPNTKVVAPL---GTDQWISLSALNRLRRTDPTKVEPMWHSRYSILKSWFADESEFSMLQHVGVKGFLVSSVLLDGGNGLVLRSLLIMTVLSVIITLMPLLEFIVGRIIVSAPFWAQWTTWGRVVRAGFPLKLLLGQLAWKGVATTFSKLENNVREYFVDMECEILEESVPLTVGV 353
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: B8BYG1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG1_THAPS) HSP 1 Score: 78.2 bits (191), Expect = 7.200e-12 Identity = 69/248 (27.82%), Postives = 113/248 (45.56%), Query Frame = 2
Query: 689 VEWMLQQLCMYQTRVALISNPLAAKGYKLREI----------VPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVL---NNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKD 1366
+++ +Q +YQ R +S LA++G + + VP CA+ T ++ C +AE KVVAP GT +WIS SALN RR +P K + + I +Y + + Y G G +S+VL N R + L ++V P++ +I RI+ S FW + I PL+++ + K +E+ VRE+ D+E +ILE +P+T+ G +
Sbjct: 105 LKYRTEQQLLYQLRSTYLSEMLASRGVPVPTVLGVATAEGNKVPEMVDWDCAMCTYDEPKSCLYSFDAEPNTKVVAPI---GTDQWISLSALNRLRRTDPTKVEPMWHSRYAILQSWFSDTSEYSMLQ-YVGFKGFVISSVLLDGGNGMILRSLLILTVLSALVLVMPLLEFIIGRIIVSAPFWAQWQTWGRIARAGFPLKLLLGQLAWKGIASSFGKMESEVREFFVDMECEILEESVPLTVGPGSE 348 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15495.1 >prot_C-linearis_contig8.15495.1 ID=prot_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=423bp MLGVLRRLVPYTCSSHVAVHSPLGAWGLGRGGVWVSLKASNAMMVRPRPLback to top mRNA from alignment at C-linearis_contig8:744574..748673+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15495.1 ID=mRNA_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4100bp|location=Sequence derived from alignment at C-linearis_contig8:744574..748673+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:744574..748673+ >mRNA_C-linearis_contig8.15495.1 ID=mRNA_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at C-linearis_contig8:744574..748673+ (Chordaria linearis ClinC8C monoicous)back to top |