mRNA_C-linearis_contig8.15495.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15495.1
Unique NamemRNA_C-linearis_contig8.15495.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: D7G587_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G587_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 5.080e-137
Identity = 197/246 (80.08%), Postives = 228/246 (92.68%), Query Frame = 2
Query:  662 EVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP 1399
            E V YDE+AVEWM+ QLCMYQTR ALISNPLA KGYKLREIVPSPRGL+CA+STEE+RMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKE AKWKNCPTCQGPIDY LYEAYGGGAGKAVSA+LNNSRATR+AIG++A +V  ++SP++H +IVR+LTSGV WKNYHRLTFIV+LPLPLQIMGIRFLM W+ +QL+L+E+MVR+ LTD+ES+ILESRLPVT++V +DG E+ VPY++P
Sbjct:   38 EPVLYDEKAVEWMMHQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRVAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGDEIAVPYRKP 283          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 3.990e-130
Identity = 237/392 (60.46%), Postives = 271/392 (69.13%), Query Frame = 2
Query:  263 MVRPRPLESSAFVLVLGTLLAYRGGIEAV------HFQPHRVSGAVGWVHRRAGAAGAGQSITAELVPCERSTTAVAKARPSRDEAQQQSLGMRIATVLRGGRFMRQSCAGDEEIEDQENDEQXXXVLGXXXXXXXXXX-------EVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP 1399
            M RPRP E+S FVLVLG+LLA RGGIEAV      H Q H   G  GW +RR                                                                       XXX   XXXXXXXXXX       E V YDE+AVEWM+QQLCMYQTR ALISNPLA KGYKLREIVPSPRGL+CA+STEE+RMDCRMYVEAEV    VAPCKCKGTQKWISFSALNSERRKE  KWKNCPTCQGPIDY LYEAYGGGAGKAVSA+LNNSRATR+AIG++A +V  ++SP++H +IVR+LTSGV WKNYHRLTFIV+LPLPLQIMGIRFLM W+ +QL+L+E+M+R+ LTD+ES+ILESRLPVT++V +DG EV VPY++P
Sbjct:    4 MARPRPWETSTFVLVLGSLLAGRGGIEAVAPFQSRHVQ-HTRRGGAGWAYRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEVESVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCALSTEERRMDCRMYVEAEV----VAPCKCKGTQKWISFSALNSERRKEATKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATRIAIGVLATMVLWLLSPLLHLLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMLRQSLTDIESRILESRLPVTVEVREDGDEVAVPYRKP 390          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A836CP79_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP79_9STRA)

HSP 1 Score: 205 bits (522), Expect = 5.980e-58
Identity = 106/231 (45.89%), Postives = 145/231 (62.77%), Query Frame = 2
Query:  671 PYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGK 1363
            P D+E  EW++QQ  MYQTRVAL+S  L  KGY L+ ++P P GLICA ST+E  + CR+Y+E E G KVVAPC+CKG+Q+WI+  ALN +RR+EP KW  CPTCQ  IDY LYEA+  G  +  +AVLNN  A R A+           + +   +I+R++ S V W N+ R+  +    LPL I+G ++L K +      LE  VR  LT+VES ++E  LP T+   +
Sbjct:   71 PVDKEMAEWIMQQASMYQTRVALLSVELDKKGYGLKGVIPQPPGLICAKSTKEHPLRCRVYMEPEEGSKVVAPCRCKGSQRWIAIRALNQQRRREPLKWSKCPTCQAHIDYSLYEAHMAGLDRVPTAVLNNRGAGRAALAXXXXXXXXXXALIFQGLIIRVVISKVVWGNWDRIQGVWGQSLPLYILGFQWLRKRAAAAFARLEEWVRGELTEVESAVMERTLPETVSAAE 301          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S3XMD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMD3_HETAK)

HSP 1 Score: 178 bits (451), Expect = 1.410e-47
Identity = 112/281 (39.86%), Postives = 158/281 (56.23%), Query Frame = 2
Query:  536 VLRGGRFMRQSCAGDEEIEDQE--NDEQXXXVLGXXXXXXXXXXEVVPYDEEAVEWMLQQLCMYQTRVALISNPLAAKGYK--LREIVPSPRG--LICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATR--MAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTID 1354
              RGG   R+    DE  ED E   DE+                E+  YD++   W+L Q+ +Y  R AL++  L   G+   L  IV   RG  L  A+STEEK M CR+Y EAE G KVVAPCKCKGTQKWI +SALN + R EP K+KNC TC+ PIDYKLY ++  G+ + +SA+L      +  +A GL  G  A ++  ++H ++ R L S   W+NYHR   +V+ PLPL+I  ++   K   +    L   +R+ L + ES +++  LPVT++
Sbjct:   46 TFRGGAVGRKKRKNDEVDEDAELYEDEE----------------ELTSYDQDTALWLLNQMHVYHARTALLAKELRKTGHLTGLAAIVQEERGNKLDIALSTEEKPMPCRIYYEAEAGSKVVAPCKCKGTQKWIQWSALNQQWRNEPHKFKNCNTCKTPIDYKLYYSFAAGSTQWLSALLERPARLQALVAAGLAGG--AALLGLLLHGLVARALLSAALWRNYHRALGVVYAPLPLKIFVLQLTYKPVLKSFDRLVKRLRDRLVEWESALVQQALPVTVN 308          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: W7TIY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIY3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.930e-24
Identity = 76/238 (31.93%), Postives = 125/238 (52.52%), Query Frame = 2
Query:  680 EEAVEWMLQQLCMYQTRVALISNPLAAK-----------GYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVV---ALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTI 1351
            EE   W+  Q+  YQ  +AL +  L  +           G+K  E    P  ++ A        +CR++ E ++G K+VAPC C+GT KW+ F+ +N  RR++P   + C TC   IDY+ Y+ +G    + VS  L+++   R    L+A  V    L V P+   +++R+LTS +FW+ +     +V+ PLPL+I+  +++ +      +  E  VRE L + ES +LE  LPVT+
Sbjct:  199 EEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHP--YECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCL--LLASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV 431          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A4D9D8S7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8S7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.980e-23
Identity = 62/174 (35.63%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  839 DCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVV---ALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTI 1351
            +CR++ E ++G K+VAPC C+GT KW+ F+ +N  RR++P   + C TC   IDY+ Y+ +G    + VS  L+++   R    L+A  V    L V P+   +++R+LTS +FW+ +     +V+ PLPL+I+  +++ +      +  E  VRE L + ES +LE  LPVT+
Sbjct:   46 ECRIHGEVDMGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCL--LLASFVFSSVLFVQPL-SILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTV 216          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: K0T0A2_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0A2_THAOC)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-15
Identity = 75/265 (28.30%), Postives = 124/265 (46.79%), Query Frame = 2
Query:  680 EEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIV----------PSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIV--SPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKDGKEVTVPYQRP*EEG 1411
            E+ +++   Q  +YQ R   ++  LAA+G  L  I+          P      CA+ST+E+   C    +AE   KVVAP    GT +WIS +ALN  RR +P K +     Q  +         ++ L +  G       S +L+      +   LV  V++L++   P++   + RIL S  FW  +     I     PL+++  +++ K        LEN VRE++ D+E +ILE  +P+T+ VG +  +  +  +   EEG
Sbjct:  234 EKVLKFRTDQQLLYQLRSTYLTEMLAARGVPLPTIISVSTPDGEKPPEKVDWDCALSTDEEPKSCLYSFDAEPDTKVVAPL---GTDQWISLTALNRLRRTDPTKVEPMWHSQYGVLQSWFADSSEFSLLQHVGIKGFFVSSVLLDGGNGMALRSLLVLSVLSLLILFMPLIEYTVQRILVSAPFWNRWTFWGRIARAGFPLKLLIGQYVWKAVALAFRKLENEVREFVVDLECEILEDSVPITVGVGAEESDNEIRGETENEEG 495          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S0Y6J6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y6J6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.570e-14
Identity = 71/257 (27.63%), Postives = 126/257 (49.03%), Query Frame = 2
Query:  674 YDEEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREI--VPSPRGLI--------CAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAK----WKNCPTCQ----GPIDYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGK--DGKEVTV 1384
            YD+     M QQ+ + Q R   +S  LA +   +  +  V +P G +        CA+STE     C +  E E G K+V P +   T KWI+ +ALN  RR +P+K    W +    +    GP        + G  G  +S +L+ +R + + +GLV   + + + PV+  ++ R L S   W  +      VH+ LP +++ ++ +  +  +    L +++++ L D+E QILE  +P+T+  G   D ++VT+
Sbjct:  116 YDKLQAYRMKQQVLL-QLRATFLSEALAKRSLPIPSLKDVSTPDGKVPPKKVDWDCAMSTEADPKHCLISYEPEPGSKLVVPTELASTDKWITLAALNRLRRDDPSKVEPMWSDRYAIRSSWFGPNSRYSLLQHVGPKGVVLSTLLDGNRLSTV-VGLVLLFLVVQLMPVIEILVNRFLVSSFLWSRWISWYRYVHIGLPFKLLILQTVYSYVAKGFAALVSVIKDKLVDLECQILEETIPLTMGEGSEDDFQDVTI 370          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: A0A7S2PIB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIB9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-12
Identity = 70/247 (28.34%), Postives = 112/247 (45.34%), Query Frame = 2
Query:  680 EEAVEWMLQQLCMYQTRVALISNPLAAKGYKLREIV----------PSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVLNNSRATRMAIGLVAGVVALIVS--PVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDV 1357
            E+  ++  +Q  +YQ R   +S  LA +G  L  I           P      CA+ TEE    C    +AE   KVVAP    GT +WIS SALN  RR +P K +     +  I         ++ + +  G       S +L+      +   L+  V+++I++  P++  ++ RI+ S  FW  +     +V    PL+++  +   K        LEN VREY  D+E +ILE  +P+T+ V
Sbjct:  110 EKLSKYRTEQQILYQIRSTYLSEMLALRGVPLPTITSVSTADGDKPPEKVDWDCAMCTEEDPKSCLYSFDAEPNTKVVAPL---GTDQWISLSALNRLRRTDPTKVEPMWHSRYSILKSWFADESEFSMLQHVGVKGFLVSSVLLDGGNGLVLRSLLIMTVLSVIITLMPLLEFIVGRIIVSAPFWAQWTTWGRVVRAGFPLKLLLGQLAWKGVATTFSKLENNVREYFVDMECEILEESVPLTVGV 353          
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Match: B8BYG1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG1_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 7.200e-12
Identity = 69/248 (27.82%), Postives = 113/248 (45.56%), Query Frame = 2
Query:  689 VEWMLQQLCMYQTRVALISNPLAAKGYKLREI----------VPSPRGLICAISTEEKRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPI---------DYKLYEAYGGGAGKAVSAVL---NNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNYHRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILESRLPVTIDVGKD 1366
            +++  +Q  +YQ R   +S  LA++G  +  +          VP      CA+ T ++   C    +AE   KVVAP    GT +WIS SALN  RR +P K +     +  I         +Y + + Y G  G  +S+VL    N    R  + L      ++V P++  +I RI+ S  FW  +     I     PL+++  +   K        +E+ VRE+  D+E +ILE  +P+T+  G +
Sbjct:  105 LKYRTEQQLLYQLRSTYLSEMLASRGVPVPTVLGVATAEGNKVPEMVDWDCAMCTYDEPKSCLYSFDAEPNTKVVAPI---GTDQWISLSALNRLRRTDPTKVEPMWHSRYAILQSWFSDTSEYSMLQ-YVGFKGFVISSVLLDGGNGMILRSLLILTVLSALVLVMPLLEFIIGRIIVSAPFWAQWQTWGRIARAGFPLKLLLGQLAWKGIASSFGKMESEVREFFVDMECEILEESVPLTVGPGSE 348          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G587_ECTSI5.080e-13780.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUK4_9PHAE3.990e-13060.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP79_9STRA5.980e-5845.89RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S3XMD3_HETAK1.410e-4739.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TIY3_9STRA2.930e-2431.93Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D8S7_9STRA9.980e-2335.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K0T0A2_THAOC2.150e-1528.30Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S0Y6J6_9STRA2.570e-1427.63Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2PIB9_9STRA1.490e-1228.34Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BYG1_THAPS7.200e-1227.82Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:744574..748673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog159749.K0T0A2
Hectar predicted targeting categorymitochondrion
EggNOG OGs2E7VH@1,2SEDS@2759,2XCFF@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_006620.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons6
Model size1731
Cds size1269
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15495.1prot_C-linearis_contig8.15495.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 744707..748344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.6756325-UTR-C-linearis_contig8:744573..7447061622930515.6756325-UTR-C-linearis_contig8:744573..744706Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 744574..744706 +
1690881109.1498203-UTR-C-linearis_contig8:744573..7447061690881109.1498203-UTR-C-linearis_contig8:744573..744706Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 744574..744706 +
1622930515.8048735-UTR-C-linearis_contig8:748344..7486731622930515.8048735-UTR-C-linearis_contig8:748344..748673Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 748345..748673 +
1690881109.2274446-UTR-C-linearis_contig8:748344..7486731690881109.2274446-UTR-C-linearis_contig8:748344..748673Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 748345..748673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.6887038-CDS-C-linearis_contig8:744706..7453361622930515.6887038-CDS-C-linearis_contig8:744706..745336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 744707..745336 +
1690881109.160848-CDS-C-linearis_contig8:744706..7453361690881109.160848-CDS-C-linearis_contig8:744706..745336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 744707..745336 +
1622930515.7047126-CDS-C-linearis_contig8:745768..7458821622930515.7047126-CDS-C-linearis_contig8:745768..745882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 745769..745882 +
1690881109.1768584-CDS-C-linearis_contig8:745768..7458821690881109.1768584-CDS-C-linearis_contig8:745768..745882Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 745769..745882 +
1622930515.723888-CDS-C-linearis_contig8:746656..7467671622930515.723888-CDS-C-linearis_contig8:746656..746767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 746657..746767 +
1690881109.185781-CDS-C-linearis_contig8:746656..7467671690881109.185781-CDS-C-linearis_contig8:746656..746767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 746657..746767 +
1622930515.7473805-CDS-C-linearis_contig8:747264..7473841622930515.7473805-CDS-C-linearis_contig8:747264..747384Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 747265..747384 +
1690881109.1948814-CDS-C-linearis_contig8:747264..7473841690881109.1948814-CDS-C-linearis_contig8:747264..747384Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 747265..747384 +
1622930515.7662032-CDS-C-linearis_contig8:747713..7478571622930515.7662032-CDS-C-linearis_contig8:747713..747857Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 747714..747857 +
1690881109.204332-CDS-C-linearis_contig8:747713..7478571690881109.204332-CDS-C-linearis_contig8:747713..747857Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 747714..747857 +
1622930515.7842064-CDS-C-linearis_contig8:748194..7483441622930515.7842064-CDS-C-linearis_contig8:748194..748344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 748195..748344 +
1690881109.2144732-CDS-C-linearis_contig8:748194..7483441690881109.2144732-CDS-C-linearis_contig8:748194..748344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 748195..748344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15495.1

>prot_C-linearis_contig8.15495.1 ID=prot_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=423bp
MLGVLRRLVPYTCSSHVAVHSPLGAWGLGRGGVWVSLKASNAMMVRPRPL
ESSAFVLVLGTLLAYRGGIEAVHFQPHRVSGAVGWVHRRAGAAGAGQSIT
AELVPCERSTTAVAKARPSRDEAQQQSLGMRIATVLRGGRFMRQSCAGDE
EIEDQENDEQDEEVLGEEEDEGEEEEEVVPYDEEAVEWMLQQLCMYQTRV
ALISNPLAAKGYKLREIVPSPRGLICAISTEEKRMDCRMYVEAEVGKKVV
APCKCKGTQKWISFSALNSERRKEPAKWKNCPTCQGPIDYKLYEAYGGGA
GKAVSAVLNNSRATRMAIGLVAGVVALIVSPVVHAVIVRILTSGVFWKNY
HRLTFIVHLPLPLQIMGIRFLMKWSGEQLMLLENMVREYLTDVESQILES
RLPVTIDVGKDGKEVTVPYQRP*
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mRNA from alignment at C-linearis_contig8:744574..748673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15495.1 ID=mRNA_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4100bp|location=Sequence derived from alignment at C-linearis_contig8:744574..748673+ (Chordaria linearis ClinC8C monoicous)
CCCTAGCTAGGCCTAATGCCGTGATTTTGTGATTTTAGGCTAACGGCTGG AAACCTATTTGGCATTCGTATTTCCTGTCTAACTCCAACTGTGACCTAAA AACCTATCCAGCTGGTTTTTTATTCCCCGACCCATGCTGGGGGTTTTACG CCGGTTGGTCCCCTACACGTGTTCCTCGCATGTTGCCGTACACTCACCGC TTGGGGCTTGGGGCTTGGGGCGTGGCGGTGTGTGGGTGAGTCTGAAAGCT TCGAACGCAATGATGGTACGCCCACGACCTCTTGAGTCGTCGGCGTTTGT GCTTGTGCTGGGCACCCTGCTAGCATATCGCGGCGGCATCGAAGCTGTGC ATTTCCAACCCCATCGTGTGTCGGGAGCAGTAGGATGGGTGCACAGAAGA GCGGGCGCCGCCGGTGCTGGACAGTCGATAACAGCAGAGCTTGTGCCGTG TGAGAGGAGCACTACGGCGGTGGCAAAGGCCAGACCGTCTAGAGACGAGG CGCAGCAGCAGTCTTTGGGGATGAGGATTGCTACGGTGCTGAGGGGGGGG CGGTTCATGCGGCAGAGCTGCGCGGGAGACGAGGAGATCGAGGACCAGGA GAACGACGAACAAGACGAGGAAGTGCTAGGAGAAGAGGAGGATGAGGGGG AGGAGGAGGAAGAGGTTGTTCCGTACGACGAGGAGGCCGTGGAGTGGATG TTGCAGCAACTGTGTATGTACCAGACACGCGTGGCTTTGATCTCGAATCC GCTGGCAGCAAAGGTGCGTCCAGTTTAACTACCGGTACTGCTTTGTACCT CCCTGCTCCCGATGGCCATGGTGGTGTTGATGTTTGGCAATACGCGGAGT ACAGCAATATAGATAACACGTTGATCAGTTTCACTTGCAAGAGGCCCCAT GCTTGATTACTGGTGGGGAACTTGTTGTTGTGACAATATAGCAGTGGGTG CATACGCTGTGGGCTAGTCTTGCACCAAGCGAGCGAGGTCTTGCGTCCTT GCGGCATGTGTGCTCTCGTGGGGAGATTACCGGCAGTGTGTTGTCCTGGA CATGGCTGGATTTTTTGGCGTGTAACTCCCCGGCAGAGTTACAACAAGTC AGGTGCACAACATAACCAAGGATCTCAAGTCTACAGTATCAGCTCGTCGT CGTGTTGTCTCACCCTATGCGGCGGTGGTTCGTTTCGTTTCTCAGGGCTA CAAGCTGCGGGAGATTGTGCCGTCACCTCGAGGGCTTATCTGCGCGATCA GCACGGAGGAGAAGCGCATGGACTGCCGCATGTATGTGGAAGCGGAGGTT GGGAAGAAGGTGAGCCCGCATGCGCGATAAGCCTGTTTTGCCCCGAAAAA CTGTAGAGTAGATGCGCTCGTGAAGACTTGGCGCGCCGTCACTCCGTGTT CAGCTTTTTAGCTGGGCACACCCTGTTGAGGGCAAAGGGGACTGCCTTCG CGAAGAAATTACTCCGTGTTCAGCTTTTTAGCTGGGCACACCCTGTTGAG GGCAAAGGGGACTGCCTTCGCGAAGAAATTACTGTACATCTGTGATTTAG AGTACAGGGGGCTCCGTAACCCTAACCCTAATCCCAACCACACACACACA CACACAGTTAGCCAATTCCATACTTCATCCCATATGTTTTCTTACTACAA GTCTGCGTAGACTACCGGGCAAAGGTGCCGCAACTTTTAGCTACTGCGGC ATCGGTGGATACTGCTTGGTATTGGTTGAGACGAGAGCTCGGTATGTTTA GCACTTCCCCGTGCTGCGTTAAGCTTGAAAGTTTTTGCCGAAACGTCCAT AAGTTTGAGTCCGTGGTGTTGCGAAACGTCCAGACCTTGCTGCCCGTTGT CGTCTCTCCATCGTGAATGCTTTTTGCTCTGTTCCTTATTTTGTACGCGA GTCGAGAAATCTGGATCAACATCTTGTCCGCAGCAGCATGCACCATCAAA CCAAATGCGGGACCTGAGCGCTCCAAAAGTTCTGCTAAACCGATGTCTTG TTTACCCTCTCCCCTATGTAGAGTTCAAAATGTGCTGGATGCGACAACCA ACGCAAGGATTGTGTGTATGGTGCGCTCCTCAGGTGGTGGCGCCTTGCAA GTGCAAAGGCACTCAAAAGTGGATAAGCTTCTCCGCCCTCAATTCGGAGA GAAGGAAGGAGCCCGCCAAGTGGAAAAATTGCCCTACATGCCAGGTTTTT TTTTTGTCTGGTTTTGGCTCTTTTGGTTTGATTCATGGCTGTTTGATGGA AATAGTTAGCATAAGGTTTCTGTCACAAACGTGCCACACCGCACCGTGTT TTTGTGTGGAAGAGGTTTGTAAACAGAGAGGGCAACTTTTTCTCTCTATT AGGGTGTTTTTGTTTGTGCTTCGTTTGATGTGAGGCACGCTAGGAGGACG GTGCTGATCGTGTGATGTGACAGAACATCACTTGGTTCGCGGTTGGGGAT GCAGGCCAGACCTATGACCTTTCTTCCACCACGTTCAGTTCGAGAAGGAG GGTGGGAGGGGAGGCGAGTTTGAAGCACAATTCTGGGCAACGCGTGGGAG GCATATGGTCTATGTCTGTTGCGATTTTTCCGCGTGTTTGTTCTGTTGAC CCGCACTTGACCTCTCGCCGTGCGTGCGTCCGTGGTTTGTGTATGAATCC TCCGTACTCTCGTCAAAACTCGATCGCGCACCACTTTTCAGGGTCCAATC GACTACAAGCTGTACGAGGCTTACGGCGGTGGCGCAGGAAAGGCTGTGTC CGCGGTGCTCAACAACTCGAGGGCGACACGGATGGCGATTGGACTCGTGG CCGGTGTCGTTGTGAGCAGTTTCTCTCATTTCCCCCCTCTCATGTTCGTG CCGTGTATGTACGAAGTATGATGTTTGCACGGTGTTTCATCCTGTCATGC ATGTGAACACTCCGCTAACGCCCCGTCAAAAATAGCTTCTTTCTTTATTC GTGTGTTTGCTCATACGACGTGGAATAGATGTTGAGGGGGCAGGGATAAA TGTCGCAGCTTAAGTTGGCTGTTTATGATGCATGGTCGTGCACGTAACGT TTATGCTTCTCTTCCCGCTGTCGTCCGTGCCCCCTCTCGTACGCACCCGA TGGACACGACGCACTTCGTGCTGCTGGCCCACATCATCAGGCGTTGATAG TAAGCCCTGTGGTGCACGCGGTCATTGTGCGCATTTTGACGAGCGGGGTG TTTTGGAAGAACTACCACCGCCTCACGTTCATCGTGCACCTACCACTGCC GCTACAGATCATGGGCATCCGCTTCCTCATGAAGGTATGTATACCTATTT TCGGTTCAACACACTTGCAGCAGAGAGTAGGACGATACTTCCTGACTGCC CGCCCTTCAAGGAGATTCGTTTTGTTTGCCTACTTCGAATATAGCGTAAC TTGGTGGTGGGTGTAAATGTTTTTTTTGTTTAGTTCGTCTAGTCTACGAC TTGAATACTGATCCATATTCACGATCCGGGGACACATATCTCGGCATGTT CTACATATGATGTTGTGAGGCTTTCGCGGGTTCTGGTGGCAACGCATTCT TCTCGACGACTTGCTGAGCTCGAAACTGTTGTTCACGCCATCGCTCTCGC CGATTGACGACGTTTTTGCAGTGGAGCGGCGAGCAGCTGATGTTGCTCGA GAATATGGTGCGGGAGTATCTAACCGACGTGGAAAGCCAGATTCTGGAGT CGAGACTTCCGGTCACCATAGACGTAGGAAAGGACGGGAAGGAGGTTACC GTACCATACCAACGGCCATGAGAAGAGGGGCATCAACGATCACAGCTTTG AATTGTCCGGCAATCAGAGTTGCTTGTGTAAGCACGATTAATTATCCCGG TCGTTTCTTTCACGGGCTTACGGCAATGTGGGCGCCTGCAACGTAGGGTA CTGGTGCAAGATTTCGGCAGCTGACCTTTCTATTCGCCAGCTGCCAAGAG GAGCGACAGCAGTCAAGAGAGATGAACGGTGTCGTTCTCGTCTAAATTTA CGGTGCTGTTACATCAAACCTCTTTTCGAACGACAGCGGGCCAGGAAGAG GGAGAGTTCTCTGTTCGGAGCGGACTTGGCTCAGCAGACACAAATACGAC
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Coding sequence (CDS) from alignment at C-linearis_contig8:744574..748673+

>mRNA_C-linearis_contig8.15495.1 ID=mRNA_C-linearis_contig8.15495.1|Name=mRNA_C-linearis_contig8.15495.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at C-linearis_contig8:744574..748673+ (Chordaria linearis ClinC8C monoicous)
ATGCTGGGGGTTTTACGCCGGTTGGTCCCCTACACGTGTTCCTCGCATGT
TGCCGTACACTCACCGCTTGGGGCTTGGGGCTTGGGGCGTGGCGGTGTGT
GGGTGAGTCTGAAAGCTTCGAACGCAATGATGGTACGCCCACGACCTCTT
GAGTCGTCGGCGTTTGTGCTTGTGCTGGGCACCCTGCTAGCATATCGCGG
CGGCATCGAAGCTGTGCATTTCCAACCCCATCGTGTGTCGGGAGCAGTAG
GATGGGTGCACAGAAGAGCGGGCGCCGCCGGTGCTGGACAGTCGATAACA
GCAGAGCTTGTGCCGTGTGAGAGGAGCACTACGGCGGTGGCAAAGGCCAG
ACCGTCTAGAGACGAGGCGCAGCAGCAGTCTTTGGGGATGAGGATTGCTA
CGGTGCTGAGGGGGGGGCGGTTCATGCGGCAGAGCTGCGCGGGAGACGAG
GAGATCGAGGACCAGGAGAACGACGAACAAGACGAGGAAGTGCTAGGAGA
AGAGGAGGATGAGGGGGAGGAGGAGGAAGAGGTTGTTCCGTACGACGAGG
AGGCCGTGGAGTGGATGTTGCAGCAACTGTGTATGTACCAGACACGCGTG
GCTTTGATCTCGAATCCGCTGGCAGCAAAGATGCTGGGGGTTTTACGCCG
GTTGGTCCCCTACACGTGTTCCTCGCATGTTGCCGTACACTCACCGCTTG
GGGCTTGGGGCTTGGGGCGTGGCGGTGTGTGGGTGAGTCTGAAAGCTTCG
AACGCAATGATGGTACGCCCACGACCTCTTGAGTCGTCGGCGTTTGTGCT
TGTGCTGGGCACCCTGCTAGCATATCGCGGCGGCATCGAAGCTGTGCATT
TCCAACCCCATCGTGTGTCGGGAGCAGTAGGATGGGTGCACAGAAGAGCG
GGCGCCGCCGGTGCTGGACAGTCGATAACAGCAGAGCTTGTGCCGTGTGA
GAGGAGCACTACGGCGGTGGCAAAGGCCAGACCGTCTAGAGACGAGGCGC
AGCAGCAGTCTTTGGGGATGAGGATTGCTACGGTGCTGAGGGGGGGGCGG
TTCATGCGGCAGAGCTGCGCGGGAGACGAGGAGATCGAGGACCAGGAGAA
CGACGAACAAGACGAGGAAGTGCTAGGAGAAGAGGAGGATGAGGGGGAGG
AGGAGGAAGAGGTTGTTCCGTACGACGAGGAGGCCGTGGAGTGGATGTTG
CAGCAACTGTGTATGTACCAGACACGCGTGGCTTTGATCTCGAATCCGCT
GGCAGCAAAGGGCTACAAGCTGCGGGAGATTGTGCCGTCACCTCGAGGGC
TTATCTGCGCGATCAGCACGGAGGAGAAGCGCATGGACTGCCGCATGTAT
GTGGAAGCGGAGGTTGGGAAGAAGGGCTACAAGCTGCGGGAGATTGTGCC
GTCACCTCGAGGGCTTATCTGCGCGATCAGCACGGAGGAGAAGCGCATGG
ACTGCCGCATGTATGTGGAAGCGGAGGTTGGGAAGAAGGTGGTGGCGCCT
TGCAAGTGCAAAGGCACTCAAAAGTGGATAAGCTTCTCCGCCCTCAATTC
GGAGAGAAGGAAGGAGCCCGCCAAGTGGAAAAATTGCCCTACATGCCAGG
TGGTGGCGCCTTGCAAGTGCAAAGGCACTCAAAAGTGGATAAGCTTCTCC
GCCCTCAATTCGGAGAGAAGGAAGGAGCCCGCCAAGTGGAAAAATTGCCC
TACATGCCAGGGTCCAATCGACTACAAGCTGTACGAGGCTTACGGCGGTG
GCGCAGGAAAGGCTGTGTCCGCGGTGCTCAACAACTCGAGGGCGACACGG
ATGGCGATTGGACTCGTGGCCGGTGTCGTTGGTCCAATCGACTACAAGCT
GTACGAGGCTTACGGCGGTGGCGCAGGAAAGGCTGTGTCCGCGGTGCTCA
ACAACTCGAGGGCGACACGGATGGCGATTGGACTCGTGGCCGGTGTCGTT
GCGTTGATAGTAAGCCCTGTGGTGCACGCGGTCATTGTGCGCATTTTGAC
GAGCGGGGTGTTTTGGAAGAACTACCACCGCCTCACGTTCATCGTGCACC
TACCACTGCCGCTACAGATCATGGGCATCCGCTTCCTCATGAAGGCGTTG
ATAGTAAGCCCTGTGGTGCACGCGGTCATTGTGCGCATTTTGACGAGCGG
GGTGTTTTGGAAGAACTACCACCGCCTCACGTTCATCGTGCACCTACCAC
TGCCGCTACAGATCATGGGCATCCGCTTCCTCATGAAGTGGAGCGGCGAG
CAGCTGATGTTGCTCGAGAATATGGTGCGGGAGTATCTAACCGACGTGGA
AAGCCAGATTCTGGAGTCGAGACTTCCGGTCACCATAGACGTAGGAAAGG
ACGGGAAGGAGGTTACCGTACCATACCAACGGCCATGATGGAGCGGCGAG
CAGCTGATGTTGCTCGAGAATATGGTGCGGGAGTATCTAACCGACGTGGA
AAGCCAGATTCTGGAGTCGAGACTTCCGGTCACCATAGACGTAGGAAAGG
ACGGGAAGGAGGTTACCGTACCATACCAACGGCCATGA
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