mRNA_C-linearis_contig8.15492.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE) HSP 1 Score: 308 bits (788), Expect = 3.950e-102 Identity = 158/207 (76.33%), Postives = 177/207 (85.51%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSRPTIHSILHTVEAIRLHGE 850
LV PDASGLPLPLY+AMR+VPT+HVPVERLHFDALGQ QLCQVF LE+LST R+LVSAIMAQ+ LLYPPGT+KLKDIVTNY+SLTGSDKWTLQSIM LV+RMVLQNVPAM R +IN LK EWGTYE VL+ALR+L+++ SLLS A+RAPS+TE EL QLD L RD VG F ++GRTGSRPTIHSILHTVEAIRLHGE
Sbjct: 55 LVAPDASGLPLPLYTAMRIVPTEHVPVERLHFDALGQSQLCQVFFLEMLSTAARQLVSAIMAQKPPLLYPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTR--------EINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFKIMGRTGSRPTIHSILHTVEAIRLHGE 253
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE) HSP 1 Score: 313 bits (802), Expect = 1.520e-97 Identity = 162/208 (77.88%), Postives = 179/208 (86.06%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDV--VGVFSSVLGRTGSRPTIHSILHTVEAIRLHG 847
LV P+ASGL LPLY AMR+VP DHVPVERLHFDALGQCQLCQVFCLELLS KGRRLVSAIMAQ+SSLLYPPGT KLKDI+T+Y SLTGSDKWTLQSIM LV+R+VLQ++P+M R NMKKRD+ K EWGTYE VLDALR LIQ VSLLSFA+RAPSY + EL+QLD L RD VG FS ++GRTGSRPTIHS+LH VEAIRLHG
Sbjct: 223 LVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRLVSAIMAQKSSLLYPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMRR---NMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLHG 427
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE) HSP 1 Score: 308 bits (789), Expect = 1.440e-92 Identity = 159/206 (77.18%), Postives = 178/206 (86.41%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSRPTIHSILHTVEAIRLHG 847
LV PDASGLPLPLY AMRVVPT++VPVERLHFDALGQ QLCQ+F LE+LST GRRLV AIMAQ+ SLLYPPGT K+KDIVTNY+SLTGSDKWTLQSIM LV+RMVLQNVPAM R NM R+IN LK EWGTYE +L+ALR+L+ + SLLSFA+RAPS+TE EL+QLD L RD V FS ++GRTGSRPTIHSILHTVE IRLHG
Sbjct: 791 LVEPDASGLPLPLYDAMRVVPTENVPVERLHFDALGQSQLCQIFFLEMLSTAGRRLVGAIMAQKPSLLYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRR---NMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLHG 993
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE) HSP 1 Score: 252 bits (644), Expect = 3.030e-80 Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
LVPPD SGLPLPLY+AMR+VPT++VPVERLHFDALGQ Q CQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R NMK R+I L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct: 84 LVPPDPSGLPLPLYTAMRIVPTENVPVERLHFDALGQSQFCQVFYLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 254
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE) HSP 1 Score: 256 bits (653), Expect = 2.490e-79 Identity = 130/174 (74.71%), Postives = 154/174 (88.51%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
LVPPDASGLPLPLY+AMR+VPT++VPVERLHFDALGQ QLCQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R NMK R+I L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct: 271 LVPPDASGLPLPLYTAMRIVPTENVPVERLHFDALGQSQLCQVFFLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 441
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE) HSP 1 Score: 256 bits (653), Expect = 1.290e-77 Identity = 130/174 (74.71%), Postives = 154/174 (88.51%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
LVPPDASGLPLPLY+AMR+VPT++VPVERLHFDALGQ QLCQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R NMK R+I L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct: 415 LVPPDASGLPLPLYTAMRIVPTENVPVERLHFDALGQSQLCQVFFLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 585
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5JMI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI6_9PHAE) HSP 1 Score: 253 bits (645), Expect = 5.380e-74 Identity = 133/175 (76.00%), Postives = 151/175 (86.29%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDH-VPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
LV PDASGLPLPLY+AMR+VPT+H VPVERLHFDALGQ QLCQVF E+ ST R+LVSAIMAQ+ SLLYPPGT+KLKDIVTNY+SLTGSDKWTLQSIM LV+RMVLQ+VPAM R NMK R+IN LK EWGTYE VL+A+R+L+++ SLLSFA RAPS+TE EL QLD L RD
Sbjct: 101 LVAPDASGLPLPLYTAMRIVPTEHIVPVERLHFDALGQSQLCQVFFFEMFSTAARQLVSAIMAQKPSLLYPPGTEKLKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQDVPAMRR---NMKTREINDLKAEWGTYENVLEAVRELLKRASLLSFARRAPSFTEPELLQLDKLARD 272
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KJ80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ80_9PHAE) HSP 1 Score: 235 bits (600), Expect = 1.370e-71 Identity = 134/224 (59.82%), Postives = 149/224 (66.52%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVT-----------------------------------NYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLT---------------NMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
LV P+ASGL LPLY AMR+VP DHVPVERLHFDALGQCQLCQVFCLELLS KGRR+VSAIMAQ+SSLLYPPGT KLKDI+ +Y SLTGSDKWTLQSIM LV+R+VLQ++P+MVR NMKKRD+ K EWGTYE VLDALR LIQ VSLLSFA+RAPS + EL+ LD L RD
Sbjct: 202 LVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRIVSAIMAQKSSLLYPPGTYKLKDILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMVRSQCDVSRRPNPKHLPQRRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSNNDKELRPLDNLARD 425
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE) HSP 1 Score: 235 bits (599), Expect = 2.520e-68 Identity = 127/193 (65.80%), Postives = 152/193 (78.76%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLT----NMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSR 796
LVPPDASGLPLPLY+AMR VPT++VPVERLHFDA +VF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSIMPLV+RM+LQ+V AM T NMK R+IN L TEW TY+ VL+ALR+L+++ SLLS A+ APS+TE EL+QLD L RD V++ T +R
Sbjct: 583 LVPPDASGLPLPLYTAMRTVPTENVPVERLHFDA-------RVFFLEMLSTAGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIMPLVFRMLLQDVSAMAMMFTWQRRNMKTREINDLVTEWRTYDKVLEALRELMKRSSLLSVALHAPSFTEPELRQLDKLARDAEYVWTPARVNTPTR 768
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI) HSP 1 Score: 228 bits (580), Expect = 7.280e-68 Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 2
Query: 230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVV 757
LV PD +GLPLPLY AM +VPT+ VPVERLHFDALG CQLCQVF LE+LST+GRRLVSA+M+Q SLLYP GT++LKD+V+NYSSLTGSDKWTLQSIM LV+R V Q+ AM + NMK+++IN L+ WGT VL+ L++L+Q S LS+AVRAPS+ + EL QLDLL RDVV
Sbjct: 315 LVAPDGTGLPLPLYDAMLIVPTEAVPVERLHFDALGSCQLCQVFLLEMLSTRGRRLVSAVMSQTPSLLYPAGTERLKDMVSNYSSLTGSDKWTLQSIMLLVFRPVFQDFRAMKK---NMKRQNINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 487 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15492.1 >prot_C-linearis_contig8.15492.1 ID=prot_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp MRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSback to top mRNA from alignment at C-linearis_contig8:722290..724433+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15492.1 ID=mRNA_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2144bp|location=Sequence derived from alignment at C-linearis_contig8:722290..724433+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:722290..724433+ >mRNA_C-linearis_contig8.15492.1 ID=mRNA_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig8:722290..724433+ (Chordaria linearis ClinC8C monoicous)back to top |