mRNA_C-linearis_contig8.15492.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15492.1
Unique NamemRNA_C-linearis_contig8.15492.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 3.950e-102
Identity = 158/207 (76.33%), Postives = 177/207 (85.51%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSRPTIHSILHTVEAIRLHGE 850
            LV PDASGLPLPLY+AMR+VPT+HVPVERLHFDALGQ QLCQVF LE+LST  R+LVSAIMAQ+  LLYPPGT+KLKDIVTNY+SLTGSDKWTLQSIM LV+RMVLQNVPAM R        +IN LK EWGTYE VL+ALR+L+++ SLLS A+RAPS+TE EL QLD L RD VG F  ++GRTGSRPTIHSILHTVEAIRLHGE
Sbjct:   55 LVAPDASGLPLPLYTAMRIVPTEHVPVERLHFDALGQSQLCQVFFLEMLSTAARQLVSAIMAQKPPLLYPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTR--------EINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFKIMGRTGSRPTIHSILHTVEAIRLHGE 253          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.520e-97
Identity = 162/208 (77.88%), Postives = 179/208 (86.06%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDV--VGVFSSVLGRTGSRPTIHSILHTVEAIRLHG 847
            LV P+ASGL LPLY AMR+VP DHVPVERLHFDALGQCQLCQVFCLELLS KGRRLVSAIMAQ+SSLLYPPGT KLKDI+T+Y SLTGSDKWTLQSIM LV+R+VLQ++P+M R   NMKKRD+   K EWGTYE VLDALR LIQ VSLLSFA+RAPSY + EL+QLD L RD   VG FS ++GRTGSRPTIHS+LH VEAIRLHG
Sbjct:  223 LVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRLVSAIMAQKSSLLYPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMRR---NMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLHG 427          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 1.440e-92
Identity = 159/206 (77.18%), Postives = 178/206 (86.41%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSRPTIHSILHTVEAIRLHG 847
            LV PDASGLPLPLY AMRVVPT++VPVERLHFDALGQ QLCQ+F LE+LST GRRLV AIMAQ+ SLLYPPGT K+KDIVTNY+SLTGSDKWTLQSIM LV+RMVLQNVPAM R   NM  R+IN LK EWGTYE +L+ALR+L+ + SLLSFA+RAPS+TE EL+QLD L RD V  FS ++GRTGSRPTIHSILHTVE IRLHG
Sbjct:  791 LVEPDASGLPLPLYDAMRVVPTENVPVERLHFDALGQSQLCQIFFLEMLSTAGRRLVGAIMAQKPSLLYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRR---NMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLHG 993          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 3.030e-80
Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
            LVPPD SGLPLPLY+AMR+VPT++VPVERLHFDALGQ Q CQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R   NMK R+I  L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct:   84 LVPPDPSGLPLPLYTAMRIVPTENVPVERLHFDALGQSQFCQVFYLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 254          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.490e-79
Identity = 130/174 (74.71%), Postives = 154/174 (88.51%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
            LVPPDASGLPLPLY+AMR+VPT++VPVERLHFDALGQ QLCQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R   NMK R+I  L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct:  271 LVPPDASGLPLPLYTAMRIVPTENVPVERLHFDALGQSQLCQVFFLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 441          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.290e-77
Identity = 130/174 (74.71%), Postives = 154/174 (88.51%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
            LVPPDASGLPLPLY+AMR+VPT++VPVERLHFDALGQ QLCQVF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSI+ L++RMVLQ+V AM R   NMK R+I  L TEWGTY+ VL+ALR+L+++ SLLSFA+RAPS+T+ EL+QLD L RD
Sbjct:  415 LVPPDASGLPLPLYTAMRIVPTENVPVERLHFDALGQSQLCQVFFLEMLSTTGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIILLIFRMVLQDVSAMRR---NMKTREIKDLVTEWGTYDKVLEALRELMKRASLLSFALRAPSFTDPELRQLDKLARD 585          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5JMI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI6_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 5.380e-74
Identity = 133/175 (76.00%), Postives = 151/175 (86.29%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDH-VPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
            LV PDASGLPLPLY+AMR+VPT+H VPVERLHFDALGQ QLCQVF  E+ ST  R+LVSAIMAQ+ SLLYPPGT+KLKDIVTNY+SLTGSDKWTLQSIM LV+RMVLQ+VPAM R   NMK R+IN LK EWGTYE VL+A+R+L+++ SLLSFA RAPS+TE EL QLD L RD
Sbjct:  101 LVAPDASGLPLPLYTAMRIVPTEHIVPVERLHFDALGQSQLCQVFFFEMFSTAARQLVSAIMAQKPSLLYPPGTEKLKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQDVPAMRR---NMKTREINDLKAEWGTYENVLEAVRELLKRASLLSFARRAPSFTEPELLQLDKLARD 272          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5KJ80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ80_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 1.370e-71
Identity = 134/224 (59.82%), Postives = 149/224 (66.52%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVT-----------------------------------NYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLT---------------NMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRD 751
            LV P+ASGL LPLY AMR+VP DHVPVERLHFDALGQCQLCQVFCLELLS KGRR+VSAIMAQ+SSLLYPPGT KLKDI+                                    +Y SLTGSDKWTLQSIM LV+R+VLQ++P+MVR                  NMKKRD+   K EWGTYE VLDALR LIQ VSLLSFA+RAPS  + EL+ LD L RD
Sbjct:  202 LVAPNASGLKLPLYHAMRIVPGDHVPVERLHFDALGQCQLCQVFCLELLSKKGRRIVSAIMAQKSSLLYPPGTYKLKDILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMVRSQCDVSRRPNPKHLPQRRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSNNDKELRPLDNLARD 425          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.520e-68
Identity = 127/193 (65.80%), Postives = 152/193 (78.76%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLT----NMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVVGVFSSVLGRTGSR 796
            LVPPDASGLPLPLY+AMR VPT++VPVERLHFDA       +VF LE+LST GRRLVSAIMAQ+ SLLYPPGT+KLKD+VTNY+SL GSDKWTLQSIMPLV+RM+LQ+V AM    T    NMK R+IN L TEW TY+ VL+ALR+L+++ SLLS A+ APS+TE EL+QLD L RD   V++     T +R
Sbjct:  583 LVPPDASGLPLPLYTAMRTVPTENVPVERLHFDA-------RVFFLEMLSTAGRRLVSAIMAQKPSLLYPPGTRKLKDVVTNYASLNGSDKWTLQSIMPLVFRMLLQDVSAMAMMFTWQRRNMKTREINDLVTEWRTYDKVLEALRELMKRSSLLSVALHAPSFTEPELRQLDKLARDAEYVWTPARVNTPTR 768          
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 7.280e-68
Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 2
Query:  230 LVPPDASGLPLPLYSAMRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESSLLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFLTNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELKQLDLLVRDVV 757
            LV PD +GLPLPLY AM +VPT+ VPVERLHFDALG CQLCQVF LE+LST+GRRLVSA+M+Q  SLLYP GT++LKD+V+NYSSLTGSDKWTLQSIM LV+R V Q+  AM +   NMK+++IN L+  WGT   VL+ L++L+Q  S LS+AVRAPS+ + EL QLDLL RDVV
Sbjct:  315 LVAPDGTGLPLPLYDAMLIVPTEAVPVERLHFDALGSCQLCQVFLLEMLSTRGRRLVSAVMSQTPSLLYPAGTERLKDMVSNYSSLTGSDKWTLQSIMLLVFRPVFQDFRAMKK---NMKRQNINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 487          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXT2_9PHAE3.950e-10276.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE1.520e-9777.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.440e-9277.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDY2_9PHAE3.030e-8073.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE2.490e-7974.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE1.290e-7774.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI6_9PHAE5.380e-7476.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ80_9PHAE1.370e-7159.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE2.520e-6865.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D4_ECTSI7.280e-6867.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:722290..724433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size856
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15492.1prot_C-linearis_contig8.15492.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 722567..724433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.2801526-UTR-C-linearis_contig8:722289..7225661622930515.2801526-UTR-C-linearis_contig8:722289..722566Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 722290..722566 +
1690881108.9364784-UTR-C-linearis_contig8:722289..7225661690881108.9364784-UTR-C-linearis_contig8:722289..722566Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 722290..722566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.2972276-CDS-C-linearis_contig8:722566..7226231622930515.2972276-CDS-C-linearis_contig8:722566..722623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 722567..722623 +
1690881108.9474807-CDS-C-linearis_contig8:722566..7226231690881108.9474807-CDS-C-linearis_contig8:722566..722623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 722567..722623 +
1622930515.3257062-CDS-C-linearis_contig8:722948..7231901622930515.3257062-CDS-C-linearis_contig8:722948..723190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 722949..723190 +
1690881108.9597797-CDS-C-linearis_contig8:722948..7231901690881108.9597797-CDS-C-linearis_contig8:722948..723190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 722949..723190 +
1622930515.345178-CDS-C-linearis_contig8:723798..7239761622930515.345178-CDS-C-linearis_contig8:723798..723976Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 723799..723976 +
1690881108.9764502-CDS-C-linearis_contig8:723798..7239761690881108.9764502-CDS-C-linearis_contig8:723798..723976Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 723799..723976 +
1622930515.360607-CDS-C-linearis_contig8:724331..7244331622930515.360607-CDS-C-linearis_contig8:724331..724433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 724332..724433 +
1690881108.9874213-CDS-C-linearis_contig8:724331..7244331690881108.9874213-CDS-C-linearis_contig8:724331..724433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 724332..724433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15492.1

>prot_C-linearis_contig8.15492.1 ID=prot_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp
MRVVPTDHVPVERLHFDALGQCQLCQVFCLELLSTKGRRLVSAIMAQESS
LLYPPGTQKLKDIVTNYSSLTGSDKWTLQSIMPLVYRMVLQNVPAMVRFL
TNMKKRDINILKTEWGTYEMVLDALRKLIQKVSLLSFAVRAPSYTEVELK
QLDLLVRDVVGVFSSVLGRTGSRPTIHSILHTVEAIRLHGEYA
back to top

mRNA from alignment at C-linearis_contig8:722290..724433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15492.1 ID=mRNA_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2144bp|location=Sequence derived from alignment at C-linearis_contig8:722290..724433+ (Chordaria linearis ClinC8C monoicous)
CGGGTCGAGGGTAGTGCAAGAGTTGGCGCGGTGATAAAAGAAAAGTGTTG TTCCGCGATTTTGAAATCTAGGCCACAGCGCAAATGATGCGTTGACTTGG GGAATCCTCAGTTCGACATCGACAAGAACAAGCGCACTTGGGGGCAGATA ACAGGCGGTTTCTCGGAGCTGGAGGCTCTGGCAGAGAACCCCGGTGCGCA GGCCTTGCGCTCCAAAGAGTTAGGTCTATCTAGTTCCGCCGGACGCCTCC GGACTCCCGTTGCCCCTGTACAGCGCCATGCGTGTTGTTCCGACCGACCA TGTTCCCGTCGAGCGGCTGCACTTCGATGCGCTGGTGAGTTCGTGTGACA GCAGCCGACGTGGGCCCACACGCCTTGATCACGTGGGTAGCAAACTCGAA GTTGTGGAATCTGGGCCACGGCGGAATGTGGGTTCGGGATAGTCAACTTC TACTTCCCGTTCGCACGACTGTTACTTGGCTAAATGCGCCGTTCAGTCCT CCGTTGGCGATATTTATTCCAGTTGACTTGCAATGCCGACGAGTATCGTC GGCTTTGACGGTCCCAAGCGTTCCCCCCCTTTTTTTTTCTAAGGCGCTAA AAGGGCAACCACGCAAACGAAAACTAATTTCACAAGCAACTGTTGTCCCG TCACGACAGGGGCAATGCCAGCTGTGCCAGGTTTTCTGCCTGGAATTGCT GTCGACGAAAGGTCGCCGGCTTGTCTCAGCCATCATGGCTCAGGAGTCGT CTCTGCTGTACCCACCTGGGACGCAGAAACTCAAGGATATCGTGACCAAC TACTCTTCCCTAACTGGCAGCGACAAGTGGACACTGCAATCGATCATGCC TCTTGTGTACCGGATGGTTCTACAGAATGTTCCGGCCATGGTGCGTTTTT TGTATCTTTTTGGGCGAGGGATATGCGGTTGCAGGTAACGTGCAGGAGTT GAATCACCCCAGAGGTGTTTCAAGTTTGTTTGACTTATTGCGCCTCACGT AATTTTCGAATTCGGAGCGCCCAGAATACCTTTTCTGTTGCGTTGACAAG ATGTGGTTAGACCGAGGCTCTCAGCTAACATGGTCGGGGGTGGATGCTTT TTGTTTTGGCTCTCGGGGCTAAATAAATTGAAGGGTATAATGTTCAGCTG AACGACCACATAAATTGAAGGCAGCAGAATATAACCTGACTAATTGCCTC GACCTGTGTACGTGCAACTTAAAGGCGCGCCAATTGATGTTTTCTGGGTT GTGCCTCACACCACCGCCCGCCGTGCACATCCATGAACTCGTCACTGCTT GCTTTTTTGTACCTAAACCTTTTTGCGCAGCGGAAAGCAACAGAACTGGA GTACTCTAGCCAATCCGACTTGTTGGATATTCCACATCCACGCATCCGTG GTTTAGAGAGAGTGCGCCACAACGCGTGAGCTAACGGACGGTACCCGTTG ATGTTCTGCCCTCCACTCCTGTGGTATATCACCCCCCATCTCATGCTGAC CTGCCAGAGGACGAACATGAAGAAAAGGGATATCAACATCCTCAAAACCG AGTGGGGAACGTACGAGATGGTGCTGGACGCGCTGCGGAAGCTCATTCAA AAAGTGTCTCTCCTGTCGTTCGCCGTCCGCGCGCCATCCTACACCGAAGT GGAGCTAAAACAACTCGACCTACTCGTGCGTGACGTGGTATGCTTATTCA GCCCATTTACGTTTTTCGAGTATCCCGCTTCGTGTTTCGTGAAAGTATAC CTTCGCGGCTAACGCCCGCAAGAGACACCTGAAATCTGCCTCGACACATA GCGTACGATCTATTTCGAGTCCACCCTCTGTGGCCCGCGCTGGCCGTGTT GTACCCTCATCTCTGCACTTTTATACCTACGCCAGCAAACCCTTTTGCCT CCCCCCATGTGTTCCGGGTGTTCGGACTATGGATATACGTCGTATGCATC ACAGCAGTAGGTATTGTTTTTCGTCCACTTGGCCACAAATCCTCGAATCA CAAATACCGTGGCGGAACTTAATGCCGCTACTGCATACTCAGGTCGGGGT ATTCTCCAGTGTGCTGGGGAGGACGGGATCCAGGCCCACGATACACTCCA TTCTGCACACGGTAGAAGCGATTCGCCTGCACGGTGAGTACGCT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:722290..724433+

>mRNA_C-linearis_contig8.15492.1 ID=mRNA_C-linearis_contig8.15492.1|Name=mRNA_C-linearis_contig8.15492.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig8:722290..724433+ (Chordaria linearis ClinC8C monoicous)
ATGCGTGTTGTTCCGACCGACCATGTTCCCGTCGAGCGGCTGCACTTCGA
TGCGCTGATGCGTGTTGTTCCGACCGACCATGTTCCCGTCGAGCGGCTGC
ACTTCGATGCGCTGGGGCAATGCCAGCTGTGCCAGGTTTTCTGCCTGGAA
TTGCTGTCGACGAAAGGTCGCCGGCTTGTCTCAGCCATCATGGCTCAGGA
GTCGTCTCTGCTGTACCCACCTGGGACGCAGAAACTCAAGGATATCGTGA
CCAACTACTCTTCCCTAACTGGCAGCGACAAGTGGACACTGCAATCGATC
ATGCCTCTTGTGTACCGGATGGTTCTACAGAATGTTCCGGCCATGGTGCG
TTTTTTGGGCAATGCCAGCTGTGCCAGGTTTTCTGCCTGGAATTGCTGTC
GACGAAAGGTCGCCGGCTTGTCTCAGCCATCATGGCTCAGGAGTCGTCTC
TGCTGTACCCACCTGGGACGCAGAAACTCAAGGATATCGTGACCAACTAC
TCTTCCCTAACTGGCAGCGACAAGTGGACACTGCAATCGATCATGCCTCT
TGTGTACCGGATGGTTCTACAGAATGTTCCGGCCATGGTGCGTTTTTTGA
CGAACATGAAGAAAAGGGATATCAACATCCTCAAAACCGAGTGGGGAACG
TACGAGATGGTGCTGGACGCGCTGCGGAAGCTCATTCAAAAAGTGTCTCT
CCTGTCGTTCGCCGTCCGCGCGCCATCCTACACCGAAGTGGAGCTAAAAC
AACTCGACCTACTCGTGCGTGACGTGGACGAACATGAAGAAAAGGGATAT
CAACATCCTCAAAACCGAGTGGGGAACGTACGAGATGGTGCTGGACGCGC
TGCGGAAGCTCATTCAAAAAGTGTCTCTCCTGTCGTTCGCCGTCCGCGCG
CCATCCTACACCGAAGTGGAGCTAAAACAACTCGACCTACTCGTGCGTGA
CGTGGTCGGGGTATTCTCCAGTGTGCTGGGGAGGACGGGATCCAGGCCCA
CGATACACTCCATTCTGCACACGGTAGAAGCGATTCGCCTGCACGGTGAG
TACGCTGTCGGGGTATTCTCCAGTGTGCTGGGGAGGACGGGATCCAGGCC
CACGATACACTCCATTCTGCACACGGTAGAAGCGATTCGCCTGCACGGTG
AGTACGCT
back to top