mRNA_C-linearis_contig8.15491.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE) HSP 1 Score: 228 bits (582), Expect = 6.120e-68 Identity = 126/228 (55.26%), Postives = 146/228 (64.04%), Query Frame = 3
Query: 15 RMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALG 698
R++E+ YD R +V+ VR FR +EVR EEERRG LLRVWEDC+P + +EL A VLGL E+ T +GDGG H FPW RF AEGFV +AG KR+ AM KPFKVSE PW EGT D PLF +R GV LNDMNL FYSAPVV S DAFNA GL K+SIGGSYFGW WR+ AVQR+K QTHV L + E L + G +G LG
Sbjct: 132 RLMEIFYD-DVRRLVLVTVRLFRTAAEVRGVGEEERRGGLLRVWEDCSPGSGVELEAAKVLGLVEMETPQ-----NRSGDGG---HPFPWDRFYAEGFVTAAGTKRRHQGDAMPKPFKVSEAPWHAEGTTDKPLFGVRHQGVHLNDMNLAFYSAPVVFSCDAFNAWGLGNKHSIGGSYFGWGWRSQAVQRLKNQTHVGTLATPGARSEGENGL-QCEILGLLQQGCLG 349
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE) HSP 1 Score: 221 bits (564), Expect = 5.230e-62 Identity = 123/239 (51.46%), Postives = 150/239 (62.76%), Query Frame = 3
Query: 9 LCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALGGARSWTRKG 725
LCRML++ YD R++V+ VR FR VSEVR R+EERRG LLRVWEDCT D E+EL A VLGL E+ T E G + H+FPW RFV EGFV G KR SS + KPF VSE PW EG A+ PL+ LR +GV ND +LPF+SA +V + DAFNA G+ K+S+GGSYFGWAWR PAVQR+K Q+HV L E L + G G LG A+ ++G
Sbjct: 460 LCRMLKIFYDEA-RQLVIVTVRLFRGVSEVRGVRQEERRGGLLRVWEDCTADGEVELKADAVLGLVEMETPHEMAPA----GGSQGGHNFPWDRFVGEGFVRRTGTKRPLQSSDLPKPFTVSESPWCMEGPAERPLWGLRRSGVHFNDTDLPFFSASLVFNCDAFNAFGMGCKHSVGGSYFGWAWRAPAVQRLKHQSHVGTLASPGACCRGEIGL-QCEVLGLLQNGCLGRAKLTDQEG 692
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE) HSP 1 Score: 209 bits (532), Expect = 2.910e-59 Identity = 114/229 (49.78%), Postives = 138/229 (60.26%), Query Frame = 3
Query: 12 CRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALG 698
CR+LEL +D R+ VVA VR FR +EVR E E RG L R WEDCT E+ L DVLGLAE+YT E +A +H+G+ + WGRF+ EGFVV AG KRQ+ + F+V+ PW EGT D PLF LR G LN+ NL F+SAPV NDAFN G+ K+S+GG YFGW WRT AVQR+KRQTHV L E L + G +G LG
Sbjct: 357 CRLLELFWDVESRQ-VVATVRTFRSAAEVRHVGETETRGGLQRTWEDCTVGGELLLEVADVLGLAEIYTEDEMDADKHDGEWDQGARCDMWGRFLGEGFVVQAGKKRQRAGDDPVQQFEVTHAPWCKEGTPDNPLFVLRREGFHLNNENLAFFSAPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGL-QCEILGLLQRGCLG 583
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE) HSP 1 Score: 207 bits (527), Expect = 4.050e-59 Identity = 114/204 (55.88%), Postives = 132/204 (64.71%), Query Frame = 3
Query: 3 AMLCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSAL 614
A LCR+LE+ YD G R +V+ VR FR VSEVR EERRG LLRVWE CT ++EL A +VLGL E+ T E A H +PW RF EGFV G KR S+A KPF V+E W EG A+ PL+ LR GV LNDMNLP+YSAP V DAFNA G+ K+SIGGSYFGWAWRTPAVQR+ +THV L
Sbjct: 89 ATLCRILEIFYD-GERRLVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEGCTC--KLELKANEVLGLVEMETPHEMAAAGH---------PYPWDRFFGEGFVRQTGTKRALQSNARPKPFAVTESSWCAEGPANRPLWGLRREGVHLNDMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLNHRTHVGTL 280
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.130e-58 Identity = 115/204 (56.37%), Postives = 135/204 (66.18%), Query Frame = 3
Query: 3 AMLCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSAL 614
A LCR+LE+ YD G R +V+ VR FR VSEVR EERRG LLRVW+DCT ++EL A DVLGL E+ T E A H +PW RF EGF+ G K+ S+A KPF V+E PW EG A+ PL+ LR GV LN+MNLP+YSAP V DAFNA G+ K+SIGGSYFGWAWRTPAVQR+K QTHV L
Sbjct: 379 ATLCRILEIFYD-GERRLVLVTVRLFRGVSEVRGVGNEERRGGLLRVWKDCTC--KLELKANDVLGLVEMETPHEMAAAGH---------PYPWDRFFGEGFLRQTGTKQALQSNARPKPFAVTESPWCAEGPANSPLWGLRREGVHLNNMNLPYYSAPTVFHCDAFNAFGMGCKHSIGGSYFGWAWRTPAVQRLKHQTHVGTL 570
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE) HSP 1 Score: 198 bits (503), Expect = 6.460e-54 Identity = 106/229 (46.29%), Postives = 140/229 (61.14%), Query Frame = 3
Query: 12 CRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALG 698
CR+LEL +D VVA VR FR V+EVR ++E RG L+R+WEDCT E++L DVLGLAE+YT E E QH G+ + W RFV EGFVV A KR++ + ++V+ PW EGT++ PLF LR G LN+ NL F+SAPVV N+AFN G+ K+S+GG+YFGW WR+ AVQR+++QTHV L E L + G +G +G
Sbjct: 162 CRLLELFWDTESGG-VVATVRGFRPVAEVRNVGQDETRGGLVRIWEDCTAGAEMQLNVADVLGLAEIYTADEMEVDQHGGEWNQGVRCTSWDRFVGEGFVVQARVKRRRSGEDSVQKYEVTHAPWCKEGTSEDPLFVLRREGFNLNNDNLVFFSAPVVCYNNAFNCFGMGNKHSVGGTYFGWPWRSQAVQRLRQQTHVGTLASTGASCAGEIGL-QCEILGLLQRGCVG 388
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE) HSP 1 Score: 195 bits (496), Expect = 4.120e-53 Identity = 119/252 (47.22%), Postives = 135/252 (53.57%), Query Frame = 3
Query: 3 AMLCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVK------------------------------------------------NSIGGSYFGWAWRTPAVQRMKRQTHVSAL 614
A LCR+LE+ YD G R +V+ VR FR VSEVR EERRG LLRVWEDCT ++EL A DVLGL E+ T E A H +PW RF EGFV G KR S+A KPF V+E PW EG A+ PL+ LR GV LNDMNLP+YSAP V DAFNA G+ K +SIGGSYFGWAWRTPAVQR+K QTHV L
Sbjct: 388 ATLCRILEIFYD-GERRLVLVTVRLFRGVSEVRGVGNEERRGGLLRVWEDCTC--KLELKANDVLGLVEMETPHEMAAAGH---------PYPWDRFFGEGFVRQTGTKRALQSNARPKPFAVTESPWCAEGPANRPLWGLRREGVHLNDMNLPYYSAPTVFHCDAFNAFGMGCKVSVWTTILMLLRDVPPDLTPSGGDKFAIAYRDSPILRLCTCMRCCGSQHSIGGSYFGWAWRTPAVQRLKHQTHVGTL 627
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: D7G2D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D4_ECTSI) HSP 1 Score: 187 bits (474), Expect = 3.000e-52 Identity = 100/207 (48.31%), Postives = 122/207 (58.94%), Query Frame = 3
Query: 78 FRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALG 698
FR +EVR E E RG LLR WEDCT E+ L DVLGLAE+YT+ E +A +H+G+ + W RF+ EGFVV AG KRQ+ + F+V+ PW EGT D PLF LR G LN+ NL F+ PV NDAFN G+ K+S+GG YFGW WRT AVQR+KRQTHV L E L + G +G LG
Sbjct: 2 FRSAAEVRHVGETETRGGLLRTWEDCTVGGELLLEVDDVLGLAEIYTVDEMDADKHDGEWDQGARCDMWDRFLGEGFVVQAGKKRQRAGDDPVQQFEVTHAPWCKEGTPDNPLFVLRREGFHLNNENLAFFLTPVTFYNDAFNCFGMGNKHSVGGGYFGWPWRTQAVQRLKRQTHVGTLASTGACCQGEIGL-QCEILGLLQQGCLG 207
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE) HSP 1 Score: 174 bits (441), Expect = 5.960e-46 Identity = 108/232 (46.55%), Postives = 125/232 (53.88%), Query Frame = 3
Query: 3 AMLCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVKNSIGGSYFGWAWRTPAVQRMKRQTHVSALLRAAEQVITERSLCSAKYWGCCSKGALG 698
A LCRMLE+ Y G R +V+ VR FR SE R+ EERRG LLRVWE+CT ++EL A DVL L E+ T E A H +PW RF KPF V+E PW EG A+ P + LR GV LNDMNLP+YSA V DA NA G+ K+SIGGS FGWAWRTPAVQR+K QTHV L R G CS+G G
Sbjct: 269 ANLCRMLEIFYG-GERRLVLVTVRLFRGASEARSVGNEERRGGLLRVWENCTC--KLELKANDVLELVEMETPHEIAAAGH---------PYPWDRFWR----------------GWPKPFAVTESPWCAEGPANKPFWGLRRQGVHLNDMNLPYYSASTVFHCDAINAFGMGCKHSIGGSCFGWAWRTPAVQRLKHQTHVGTLARP----------------GACSQGETG 456
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 6.190e-42 Identity = 88/150 (58.67%), Postives = 98/150 (65.33%), Query Frame = 3
Query: 78 FRVVSEVRAAREEERRGELLRVWEDCTPDNEIELMATDVLGLAEVYTLAEFEAGQHNGDGGEEEHSFPWGRFVAEGFVVSAGNKRQQPSSAMAKPFKVSEMPWSPEGTADLPLFSLRCAGVQLNDMNLPFYSAPVVLSNDAFNAAGLAVK 527
F +EVR EEERRG LLRVWEDC+P + +EL A VLGL E+ T + +GDGG H FPW RF AEGFV +AG KR+ AM KPFKVSE PW EGT D PLF +R GV LNDMNL FYSAPVV S AFN GL K
Sbjct: 413 FGTAAEVRGVGEEERRGGLLRVWEDCSPGSGVELEAAKVLGLVEMETPQ-----KSSGDGG---HPFPWDRFYAEGFVTAAGTKRRHQGDAMPKPFKVSEAPWHAEGTTDKPLFGVRHQGVHLNDMNLAFYSAPVVFSCGAFNTWGLGNK 554 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15491.1 >prot_C-linearis_contig8.15491.1 ID=prot_C-linearis_contig8.15491.1|Name=mRNA_C-linearis_contig8.15491.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=260bp MLCRMLELLYDAGPREVVVAVVRPFRVVSEVRAAREEERRGELLRVWEDCback to top mRNA from alignment at C-linearis_contig8:720982..722061+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15491.1 ID=mRNA_C-linearis_contig8.15491.1|Name=mRNA_C-linearis_contig8.15491.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1080bp|location=Sequence derived from alignment at C-linearis_contig8:720982..722061+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:720982..722061+ >mRNA_C-linearis_contig8.15491.1 ID=mRNA_C-linearis_contig8.15491.1|Name=mRNA_C-linearis_contig8.15491.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at C-linearis_contig8:720982..722061+ (Chordaria linearis ClinC8C monoicous)back to top |