mRNA_C-linearis_contig8.15490.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15490.1
Unique NamemRNA_C-linearis_contig8.15490.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.990e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+LHR+MQ+ SETALSET+PGGK+ RG+E   NSLTS+HV CVPTR E N++NSNHNG LA+S
Sbjct:   33 NLLLHRTMQIESETALSETHPGGKLLRGEEIEANSLTSEHVNCVPTRREGNVMNSNHNGALAKS 96
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BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-22
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+LHR+MQ+ SETALSET+PGGK+ RG+E   NSLTS+HV CVPTR E N++NSNHNG LA+S
Sbjct:  346 NLLLHRTMQIESETALSETHPGGKLLRGEEIEANSLTSEHVNCVPTRREGNVMNSNHNGALAKS 409
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.190e-22
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+L R MQ+PSETALSE YPGGK+ RG+EAA N LTSDH+ CVPTR E  ++NSNHNG LARS
Sbjct:  174 NLLLDRVMQIPSETALSEAYPGGKLLRGEEAAANLLTSDHINCVPTRREGTVMNSNHNGTLARS 237
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.190e-22
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+L R MQ+PSETALS  YPGG++ RG+EA  NSLTSDHV CVPTR E N++NSNHNG LARS
Sbjct:  293 NLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARS 356
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.190e-22
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+L R MQ+PSETALS  YPGG++ RG+EA  NSLTSDHV CVPTR E N++NSNHNG LARS
Sbjct:  284 NLLLDRVMQIPSETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARS 347
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-21
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+L R MQ+ SETALSE YPGGK+ RG+EAA N LTSDH+ CVPTR E N++NSN NG LARS
Sbjct:  363 NLLLDRVMQIQSETALSEAYPGGKILRGEEAAANRLTSDHINCVPTRQEGNVMNSNQNGTLARS 426
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.490e-21
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            NL+L R MQ+PSET LSE YPG ++ RG+EAA NSLTSDH+ CV TR E N++NSNHNG LARS
Sbjct:  283 NLLLERVMQIPSETVLSEAYPGWELLRGEEAAANSLTSDHINCVATRREGNVVNSNHNGTLARS 346
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.170e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:   23 MQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            MQ+PSETALS  YPGG++ RG+EA  NSLTSDHV CVPTR E N++NSNHNG LARS
Sbjct:    1 MQIPSETALSNAYPGGQLLRGEEATANSLTSDHVNCVPTRREGNVMNSNHNGTLARS 57
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: D7FUZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.070e-18
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 NLILHRSMQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARSS 196
            NL+L R M+L SETALSE YP GK+ RG+EAA NSLTSDHV CVPT+   N+  +N NG L+R+S
Sbjct:   57 NLLLDRDMKLASETALSEAYPAGKLLRGEEAAMNSLTSDHVNCVPTKQVGNVRETNMNGTLSRTS 121
[Close]
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.860e-18
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:   23 MQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNHNGKLARS 193
            + +PSETALS+ YPGGK+ RG+EAA NSLTSDH+ CVPTR E N++NSNHN   ARS
Sbjct:    2 INIPSETALSKVYPGGKLLRGEEAAGNSLTSDHINCVPTRREGNVMNSNHNDTFARS 58
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KML3_9PHAE9.990e-2370.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE1.080e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE1.190e-2271.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE1.190e-2271.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE1.190e-2271.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.060e-2170.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE2.490e-2168.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE3.170e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ8_ECTSI1.070e-1863.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYX6_9PHAE1.860e-1868.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:720698..720893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size196
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.0538406-UTR-C-linearis_contig8:720697..7207191622930515.0538406-UTR-C-linearis_contig8:720697..720719Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 720698..720719 +
1690881108.8661494-UTR-C-linearis_contig8:720697..7207191690881108.8661494-UTR-C-linearis_contig8:720697..720719Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 720698..720719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.0738924-CDS-C-linearis_contig8:720719..7208931622930515.0738924-CDS-C-linearis_contig8:720719..720893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 720720..720893 +
1690881108.8780785-CDS-C-linearis_contig8:720719..7208931690881108.8780785-CDS-C-linearis_contig8:720719..720893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 720720..720893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15490.1prot_C-linearis_contig8.15490.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 720720..720893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15490.1

>prot_C-linearis_contig8.15490.1 ID=prot_C-linearis_contig8.15490.1|Name=mRNA_C-linearis_contig8.15490.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=58bp
MQLPSETALSETYPGGKVWRGDEAAQNSLTSDHVTCVPTRNEENILNSNH
NGKLARSS
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mRNA from alignment at C-linearis_contig8:720698..720893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15490.1 ID=mRNA_C-linearis_contig8.15490.1|Name=mRNA_C-linearis_contig8.15490.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=196bp|location=Sequence derived from alignment at C-linearis_contig8:720698..720893+ (Chordaria linearis ClinC8C monoicous)
CAACCTGATCCTTCACCGATCGATGCAGCTGCCGTCGGAGACAGCGCTGT
CTGAGACATACCCCGGAGGGAAAGTTTGGCGCGGGGATGAGGCGGCCCAA
AATTCTCTGACGAGCGACCACGTCACTTGCGTGCCTACGAGGAACGAGGA
AAATATCCTGAACTCCAACCACAACGGCAAACTCGCGAGATCTAGC
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Coding sequence (CDS) from alignment at C-linearis_contig8:720698..720893+

>mRNA_C-linearis_contig8.15490.1 ID=mRNA_C-linearis_contig8.15490.1|Name=mRNA_C-linearis_contig8.15490.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at C-linearis_contig8:720698..720893+ (Chordaria linearis ClinC8C monoicous)
ATGCAGCTGCCGTCGGAGACAGCGCTGTCTGAGACATACCCCGGAGGGAA
AGTTTGGCGCGGGGATGAGGCGGCCCAAAATTCTCTGACGAGCGACCACG
TCACTTGCGTGCCTACGAGGAACGAGGAAAATATCCTGAACTCCAACCAC
AACGGCAAACTCGCGAGATCTAGCATGCAGCTGCCGTCGGAGACAGCGCT
GTCTGAGACATACCCCGGAGGGAAAGTTTGGCGCGGGGATGAGGCGGCCC
AAAATTCTCTGACGAGCGACCACGTCACTTGCGTGCCTACGAGGAACGAG
GAAAATATCCTGAACTCCAACCACAACGGCAAACTCGCGAGATCTAGC
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