mRNA_C-linearis_contig8.15489.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig8.15489.1
Unique Name	mRNA_C-linearis_contig8.15489.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5KE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE55_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.340e-28
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1

Query:   13 KLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            +L+ LHTM PS+A S+TVEGGAE LR NTKA  S  YPF TKEQQ IFVWQH ++I+++AL GLL++LLM+YE   FDV GL  V
Sbjct:  152 RLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDVRGLADV 236

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.310e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1

Query:   13 KLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            +L+ LHTM PS+A S+TVEGGA+ LR NT+A RS   PF TKEQQ +FVWQH ++I+++ALGGLL++LLM+YE   FDV GL GV
Sbjct:  158 RLNWLHTMTPSYASSKTVEGGADKLRENTRAGRSPFDPFRTKEQQLLFVWQHVHRISQRALGGLLEVLLMQYEGEPFDVRGLAGV 242

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BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.430e-27
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1

Query:   13 KLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            +L+ LHTM PS+A S+TVEGGAE LR NTKA  S  YPF TKEQQ IFVWQH ++I+++AL GLL++LLM+YE   FDV GL  V
Sbjct:  168 RLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDVRGLADV 252

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.460e-27
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 1

Query:    4 ACRKLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            A  +L +LHTMAPSFA S TVEGG E LRYNTKAA S  YPFATKEQQ +F+W H ++I ++A GGLL+I  M +E   FDV GL GV
Sbjct:  218 AIPRLEVLHTMAPSFASSTTVEGGPEKLRYNTKAAGSPFYPFATKEQQLMFIWIHVHRIPQRAFGGLLEIFSMVHEGEPFDVKGLAGV 305

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.470e-27
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1

Query:   13 KLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            +L+ LHTM PS+A S+TVEGGAE LR NTKA  S  YPF TKEQQ IFVWQH ++I+++AL GLL++LLM+YE   FDV GL  V
Sbjct:  159 RLNKLHTMTPSYASSKTVEGGAEKLRENTKAQGSDFYPFRTKEQQLIFVWQHVHRISQRALRGLLEVLLMQYEGEPFDVRGLADV 243

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5KG28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG28_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.930e-26
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1

Query:    4 ACRKLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            A R+L  LHT A S+A S T+EGG ENLR+NT A  S  YPF TKEQQ I++WQH ++I++KALGGLLDILL+E E   FDV GLK V
Sbjct:  113 AMRRLENLHTHASSYAASSTMEGGPENLRHNTNAEESDFYPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLEDEGNGFDVRGLKRV 200

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5JWC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.750e-26
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 1

Query:   25 LHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            LHT+APS+A S T+EGG ENLR+NTKA  S  YPF+TKEQQ I+V Q+ ++I++KALGGLLDILLME E   FDV GLKGV
Sbjct:  138 LHTLAPSYATSSTLEGGPENLRFNTKATGSSFYPFSTKEQQLIYVSQYTHQISQKALGGLLDILLMEDEGCGFDVGGLKGV 218

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BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.370e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1

Query:   13 KLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            +L +LHTMAPSFA  +T EGG E LR+NTKA  S  YPFATKEQQ +FVW H ++I+++AL GLL+ILL+ +E   FDV+GL GV
Sbjct:  239 RLDVLHTMAPSFASCKTAEGGPEKLRHNTKARGSPFYPFATKEQQLLFVWIHVHRISKRALRGLLEILLLLHEGQPFDVNGLAGV 323

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5K6W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.340e-25
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 1

Query:    4 ACRKLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            A R+L  LHT APS+A S T+EGG ENL ++T A  S  YPF TKEQQ I +WQH ++I++KALGGLLDILL+E E   FDV GL+ V
Sbjct:  113 AMRRLENLHTHAPSYAASSTMEGGPENLGHSTNAEESDFYPFRTKEQQLILIWQHTHQISQKALGGLLDILLLEDEGNGFDVRGLERV 200

[Close]

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Match: A0A6H5KS83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS83_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.870e-24
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1

Query:    4 ACRKLHMLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHAYKITRKALGGLLDILLMEYEDGKFDVSGLKGV 267
            A R+L  LHT APS+A S T+E G EN R++T A  S  +PF TKEQQ I++WQH ++I++KALGGLLDILL+E E   FDV GL+ V
Sbjct:  113 AVRRLENLHTHAPSYAASSTMEDGPENHRHDTNAEESDFFPFRTKEQQLIWIWQHTHQISQKALGGLLDILLLEDEGNGFDVRGLERV 200

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot

BLAST of mRNA_C-linearis_contig8.15489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5KE55_9PHAE	1.340e-28	63.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JG22_9PHAE	2.310e-28	62.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJM6_9PHAE	4.430e-27	63.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2F5_9PHAE	4.460e-27	62.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0J4_9PHAE	4.470e-27	63.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KG28_9PHAE	1.930e-26	62.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWC0_9PHAE	2.750e-26	67.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9M0_9PHAE	1.370e-25	61.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6W3_9PHAE	3.340e-25	60.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KS83_9PHAE	5.870e-24	57.95	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig8	contig	C-linearis_contig8:720312..720578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	267
Cds size	246
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930514.9639323-UTR-C-linearis_contig8:720311..720332	1622930514.9639323-UTR-C-linearis_contig8:720311..720332	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 720312..720332 +
1690881108.8458197-UTR-C-linearis_contig8:720311..720332	1690881108.8458197-UTR-C-linearis_contig8:720311..720332	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 720312..720332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930514.9812422-CDS-C-linearis_contig8:720332..720578	1622930514.9812422-CDS-C-linearis_contig8:720332..720578	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 720333..720578 +
1690881108.856821-CDS-C-linearis_contig8:720332..720578	1690881108.856821-CDS-C-linearis_contig8:720332..720578	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 720333..720578 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig8.15489.1	prot_C-linearis_contig8.15489.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig8 720333..720578 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig8:720312..720578+
coding sequence from alignment at C-linearis_contig8:720312..720578+

protein sequence of mRNA_C-linearis_contig8.15489.1

>prot_C-linearis_contig8.15489.1 ID=prot_C-linearis_contig8.15489.1|Name=mRNA_C-linearis_contig8.15489.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=82bp
MLHTMAPSFAQSRTVEGGAENLRYNTKAARSHTYPFATKEQQAIFVWQHA
YKITRKALGGLLDILLMEYEDGKFDVSGLKGV

mRNA from alignment at C-linearis_contig8:720312..720578+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig8.15489.1 ID=mRNA_C-linearis_contig8.15489.1|Name=mRNA_C-linearis_contig8.15489.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at C-linearis_contig8:720312..720578+ (Chordaria linearis ClinC8C monoicous)
CCTGCCTGTCGTAAACTACACATGCTTCACACAATGGCACCGTCTTTTGC
GCAGAGCAGGACGGTAGAGGGGGGGGCGGAGAACTTGAGATACAACACAA
AAGCTGCCCGTTCTCACACCTACCCTTTCGCGACAAAGGAGCAACAAGCC
ATCTTCGTCTGGCAGCACGCATACAAGATAACGCGAAAGGCGTTGGGAGG
ACTGCTAGACATTCTCCTCATGGAGTACGAGGACGGCAAGTTTGACGTCT
CTGGGCTAAAGGGTGTC

Coding sequence (CDS) from alignment at C-linearis_contig8:720312..720578+

>mRNA_C-linearis_contig8.15489.1 ID=mRNA_C-linearis_contig8.15489.1|Name=mRNA_C-linearis_contig8.15489.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at C-linearis_contig8:720312..720578+ (Chordaria linearis ClinC8C monoicous)
ATGCTTCACACAATGGCACCGTCTTTTGCGCAGAGCAGGACGGTAGAGGG
GGGGGCGGAGAACTTGAGATACAACACAAAAGCTGCCCGTTCTCACACCT
ACCCTTTCGCGACAAAGGAGCAACAAGCCATCTTCGTCTGGCAGCACGCA
TACAAGATAACGCGAAAGGCGTTGGGAGGACTGCTAGACATTCTCCTCAT
GGAGTACGAGGACGGCAAGTTTGACGTCTCTGGGCTAAAGGGTGTCATGC
TTCACACAATGGCACCGTCTTTTGCGCAGAGCAGGACGGTAGAGGGGGGG
GCGGAGAACTTGAGATACAACACAAAAGCTGCCCGTTCTCACACCTACCC
TTTCGCGACAAAGGAGCAACAAGCCATCTTCGTCTGGCAGCACGCATACA
AGATAACGCGAAAGGCGTTGGGAGGACTGCTAGACATTCTCCTCATGGAG
TACGAGGACGGCAAGTTTGACGTCTCTGGGCTAAAGGGTGTC