mRNA_C-linearis_contig8.15449.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15449.1
Unique NamemRNA_C-linearis_contig8.15449.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15449.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 5.250e-150
Identity = 240/384 (62.50%), Postives = 300/384 (78.12%), Query Frame = 1 
Query:   76 AAEATEADAVGMTKLLATFFVGEIQVAITDLDLTNIGRTQRQAGVDALIAQIKSDGFDERYAPVVCLLHRLPANQTLEMLLAAGGIRFRVIDGNHRVAALIQLADESPAATATKLIPVRVYQPMTPATERMVAAGCNRISSNVVKTLLVDEIVWYRNVIRALQEQNKGED-MSEDQVLRAVRNDFKNQNQKAPSTPTLKKYVSIALNIAPIALEALKDVSFLPGRAEKHPDRTQLNHKRVTLKLLERPEFQAMTHCQQEVYILRLAKGSITVNKQLNQDQCKVLDSTAQYVGDEISRVEMIAPRAMWSADFNIGIRKVMIAGLKSRYFVHEDGLQKSVESYQKTLLEGMEDSEPHIDLLLREPHNTSALLLKGDPVMKPRWEAF 1224
            AAEA EA  VG++KLLA F++G  +V+I  L+LT+IGR QRQAG+ AL   I+SDGFDE YAP+VCL++ LP  Q+L  +LAAG I+ RVIDGNHRVAAL Q+ DE    T+ ++I VRV+QPM  ATERMVAAGCNRISSNVVKTLLVDE+VWYR+VI ALQEQ++G   M+ DQ+L+A++ DF NQ+QKAP+  TLKK++ IALNI P  LEAL+D+S+LPGR   HPD T L++KRVTLKL+ER +FQ M   QQE Y+ RLAKG+IT NKQLN +QCK LDSTA+ +  EI RVE I PRA WS  F  G+RKVMI GL+SRY+ H  GLQ +VE+Y+KTL E ME S+ HI++LLREPH  ++ LL+ DP MKP+WEA+
Sbjct:    4 AAEADEASTVGISKLLAKFYLGSHRVSIRGLELTSIGRAQRQAGIVALKKHIESDGFDESYAPIVCLVNPLPQEQSLGTVLAAGDIKLRVIDGNHRVAALQQI-DEETKPTSPRVISVRVHQPMPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFANQSQKAPANQTLKKWIGIALNITPYGLEALRDLSYLPGREPNHPDLTSLDYKRVTLKLVERTKFQGMNKWQQEAYVYRLAKGAITTNKQLNDEQCKTLDSTAETIAQEIERVESIIPRAEWSEGFKRGMRKVMIGGLQSRYYGHLIGLQTNVEAYKKTLPEKMEVSKDHINMLLREPH--ASTLLQDDPEMKPKWEAY 384
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE5.250e-15062.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:169823..172882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1252
Cds size1251
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15449.1prot_C-linearis_contig8.15449.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 169823..172881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.8420792-CDS-C-linearis_contig8:169822..1703001622930505.8420792-CDS-C-linearis_contig8:169822..170300Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 169823..170300 +
1690881103.9638414-CDS-C-linearis_contig8:169822..1703001690881103.9638414-CDS-C-linearis_contig8:169822..170300Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 169823..170300 +
1622930505.8715568-CDS-C-linearis_contig8:170790..1709451622930505.8715568-CDS-C-linearis_contig8:170790..170945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 170791..170945 +
1690881103.9749022-CDS-C-linearis_contig8:170790..1709451690881103.9749022-CDS-C-linearis_contig8:170790..170945Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 170791..170945 +
1622930505.8908737-CDS-C-linearis_contig8:171343..1715821622930505.8908737-CDS-C-linearis_contig8:171343..171582Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 171344..171582 +
1690881103.9936996-CDS-C-linearis_contig8:171343..1715821690881103.9936996-CDS-C-linearis_contig8:171343..171582Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 171344..171582 +
1622930505.9115179-CDS-C-linearis_contig8:171859..1719971622930505.9115179-CDS-C-linearis_contig8:171859..171997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 171860..171997 +
1690881104.0036068-CDS-C-linearis_contig8:171859..1719971690881104.0036068-CDS-C-linearis_contig8:171859..171997Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 171860..171997 +
1622930505.9322987-CDS-C-linearis_contig8:172218..1723871622930505.9322987-CDS-C-linearis_contig8:172218..172387Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 172219..172387 +
1690881104.0126545-CDS-C-linearis_contig8:172218..1723871690881104.0126545-CDS-C-linearis_contig8:172218..172387Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 172219..172387 +
1622930505.966707-CDS-C-linearis_contig8:172809..1728811622930505.966707-CDS-C-linearis_contig8:172809..172881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 172810..172881 +
1690881104.0227914-CDS-C-linearis_contig8:172809..1728811690881104.0227914-CDS-C-linearis_contig8:172809..172881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 172810..172881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15449.1

>prot_C-linearis_contig8.15449.1 ID=prot_C-linearis_contig8.15449.1|Name=mRNA_C-linearis_contig8.15449.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=417bp
PPLHKHNYHPPHPPAIHTPFPLDKMAAEATEADAVGMTKLLATFFVGEIQ
VAITDLDLTNIGRTQRQAGVDALIAQIKSDGFDERYAPVVCLLHRLPANQ
TLEMLLAAGGIRFRVIDGNHRVAALIQLADESPAATATKLIPVRVYQPMT
PATERMVAAGCNRISSNVVKTLLVDEIVWYRNVIRALQEQNKGEDMSEDQ
VLRAVRNDFKNQNQKAPSTPTLKKYVSIALNIAPIALEALKDVSFLPGRA
EKHPDRTQLNHKRVTLKLLERPEFQAMTHCQQEVYILRLAKGSITVNKQL
NQDQCKVLDSTAQYVGDEISRVEMIAPRAMWSADFNIGIRKVMIAGLKSR
YFVHEDGLQKSVESYQKTLLEGMEDSEPHIDLLLREPHNTSALLLKGDPV
MKPRWEAFEEERKASKQ
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mRNA from alignment at C-linearis_contig8:169823..172882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15449.1 ID=mRNA_C-linearis_contig8.15449.1|Name=mRNA_C-linearis_contig8.15449.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3060bp|location=Sequence derived from alignment at C-linearis_contig8:169823..172882+ (Chordaria linearis ClinC8C monoicous)
CCTCCCCTCCACAAACACAACTACCATCCTCCCCACCCTCCTGCCATCCA
CACACCCTTCCCCCTGGACAAGATGGCGGCGGAAGCTACCGAAGCTGATG
CTGTTGGGATGACGAAGCTACTCGCCACCTTCTTCGTTGGGGAAATCCAA
GTAGCCATCACCGACCTCGACCTGACAAATATTGGCAGGACACAACGTCA
GGCTGGTGTTGATGCGTTGATAGCGCAGATTAAGTCGGACGGGTTTGACG
AGAGGTATGCACCTGTAGTTTGTCTCCTACACCGCCTCCCCGCCAACCAG
ACACTCGAGATGCTGTTGGCCGCTGGAGGTATCAGGTTCAGAGTAATTGA
TGGTAATCATAGAGTAGCAGCTTTGATCCAGCTTGCCGACGAGTCCCCAG
CCGCGACAGCTACGAAACTAATCCCAGTGCGAGTATACCAGCCGATGACT
CCGGCGACCGAGAGGATGGTAGCAGCAGGTGAGCACAAGGGAATCGAGTG
CTTCGTTGTGTAAGCATGCAACCCGTCGCTCGCGATAGGGTACATTGTAA
TTGCGCTTCGTTTGTTTAGCTTGTTGCTGTTGTTGTTGTTGGGTCCTCTT
TTTTTTTATCGAGGCTAGAATTGTTTATTTCGTGTTGACAGCGGGAGGCG
CGATTGCAGCAGGTGCCCTCTGACGTTGTGATTTTGGGTATACAGCCAAA
AAACGATTCGCTGTTCTCCTGGTGTACCTAGGTACTACGTGGCGTTGGGC
ACCCGGCCGTTTGACCTCATGTGTGTGTGTTTTGTGTGCATGTTCGGGTG
TTTTTTCTATATATATATTTGTGCGTGCGTGCGTGCGTGCGTGCGTGTCC
ACACAACTCACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
CATTTTTCTCGTGAATGTTCATGGGCACTCGTTTGTTTTCCGATGCGACT
TTGCTGCGCCTAAAGTAGGCTGCAACAGGATTTCTTCTAACGTTGTCAAG
ACTCTACTGGTGGACGAGATCGTCTGGTATAGAAATGTCATCCGCGCGTT
GCAAGAACAGAACAAGGGCGAGGACATGTCCGAAGATCAGGTGCTCAGAG
CCGTCAGGAACGACTTCAAGAACGTAAGACATAACGAACGGTTGCACTAG
GGGCGGTGTGGTGGGTTGCTTCGCAGCGCAGCAGCAAGCAGTGGTGATAA
AACAGACCGTGATACGTCGGTCATTTGAAGGTTAGGCTTACATAGTAAAT
AAAGTAGAAATAAATGCGTCCATCGGCACAGCGTGGAGAACATGCCGCCA
CGACAACAAAACCGGCGCAACAAAAATCGTACGCATCGTCATTCGTTTTT
GATGGTCGATACTGAAACATAAAGTGGTGCTTGTTGAGCAGCTTTCTTTG
CTTGGTTGTCCACCATACTTACTTTTTTAACTGCCAGCTTTATACAACGG
CATAAAATCTGAGCTTGGCACTTCATACATACAACACACATACATGCCGT
TTACATGTGATATGGACGCAGCAAAACCAGAAAGCGCCGTCCACTCCAAC
CCTGAAGAAGTACGTCAGCATTGCCCTGAACATCGCGCCCATTGCCCTGG
AGGCGCTGAAGGACGTCAGCTTTCTTCCTGGGCGAGCCGAGAAGCACCCC
GACCGCACTCAACTCAACCACAAACGTGTGACCCTCAAGCTGTTGGAGCG
CCCTGAATTCCAGGCTATGACCCACTGCCAGCAGGAAGTCTACATTCTGC
GATTGGCAAAGTATGTGAATCGGATGGCAGACGAATATTGACATACATAG
GTACATACATGCATTTCGAAGTGCACACAATATTGTTTTTTGGTCCTGCC
AACCGTTCGTTGTGTAGGGGGCGCTGAGGCACGTTGCGCACTACAAGGAG
CTTTGTTGACCTTAGACGCGCCGCGCACATCGATTTATTTCTTGAACTTA
ACGCCTTTTTTCCTTGCCCCCACGGGAAGCTCGATCACCACTAACAAGCA
GCTATTACTTCACGCCCTTTTTGCTTGCCAACACCAGGGGCTCGATCACC
GTTAACAAGCAGCTCAATCAGGACCAGTGCAAAGTCCTCGACAGCACGGC
GCAATACGTGGGCGACGAAATTTCGCGCGTGGAGATGATTGCCCCGCGTG
CAATGTGGTCAGCGGATTTCAACATGTGAGTAGTGCATTTGGAGTCTCTT
ACCGCGTGTTGACCACACAGACAGCAGCAGGACAGGAGTAACAGCAGCAA
AGGCAGGATTAGCACGGCGTCCTTGAGTTGTTGACGATCCTGAGAGTTCT
GGACTTGCTCTCTACTACGTAAAACTTATGATTGACCTGTCCTCCGCTGC
CGCCGCGCACAACTCTTCGTTGATCTCGTGCGTTTCATCTTTGAAGCGGT
ATAAGAAAAGTCATGATTGCCGGGCTCAAGAGCCGCTACTTCGTGCACGA
GGACGGCTTGCAGAAGAGCGTCGAGTCCTACCAGAAAACGCTTCTGGAGG
GAATGGAGGATTCCGAGCCTCACATCGACTTACTCCTCCGCGAACCTCAC
AACACCTCAGCACTGGCAAGATAGATAGTAGCAGCGTAGATAGCCAGACA
CTTCCAGTTTTTGCGGCCTGCCTGGCCTTCGTATCGATCCGCCTAGAATT
GATATCTCACTCGTGTTGACACTCTATACCACGGAAATTGGCCGCGTCAA
GTGTTGGATGTTGGATGAGTACGGAGAGATTGGGATAGAAAGAGGTACTG
GATAGAGAGACCGGGATGTTTTTTAATGTGAAGAAAACAACAACAACAAC
AACAACAACAACAACAACAGCCATCTCTCTATGTCATGGTATTTCGTTAC
CTGCGTATTTCTACATAGATATCAGATGGGTTTTCCACCATTTCTATATT
GTGCTCCTGTCCGTCGCCCTCACCGTTCGTTTTCGTTTCCGCACATCTCC
TACCTGCCCGCCCTCCACTGCTTTCTGCGATACCTAGCTCCTCAAAGGCG
ACCCTGTCATGAAACCCAGGTGGGAAGCATTCGAGGAGGAGCGAAAGGCC
AGTAAACAGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:169823..172882+

>mRNA_C-linearis_contig8.15449.1 ID=mRNA_C-linearis_contig8.15449.1|Name=mRNA_C-linearis_contig8.15449.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at C-linearis_contig8:169823..172882+ (Chordaria linearis ClinC8C monoicous)
CCTCCCCTCCACAAACACAACTACCATCCTCCCCACCCTCCTGCCATCCA
CACACCCTTCCCCCTGGACAAGATGGCGGCGGAAGCTACCGAAGCTGATG
CTGTTGGGATGACGAAGCTACTCGCCACCTTCTTCGTTGGGGAAATCCAA
GTAGCCATCACCGACCTCGACCTGACAAATATTGGCAGGACACAACGTCA
GGCTGGTGTTGATGCGTTGATAGCGCAGATTAAGTCGGACGGGTTTGACG
AGAGGTATGCACCTGTAGTTTGTCTCCTACACCGCCTCCCCGCCAACCAG
ACACTCGAGATGCTGTTGGCCGCTGGAGGTATCAGGTTCAGAGTAATTGA
TGGTAATCATAGAGTAGCAGCTTTGATCCAGCTTGCCGACGAGTCCCCAG
CCGCGACAGCTACGAAACTAATCCCAGTGCGAGTATACCAGCCGATGACT
CCGGCGACCGAGAGGATGGTAGCAGCAGCCTCCCCTCCACAAACACAACT
ACCATCCTCCCCACCCTCCTGCCATCCACACACCCTTCCCCCTGGACAAG
ATGGCGGCGGAAGCTACCGAAGCTGATGCTGTTGGGATGACGAAGCTACT
CGCCACCTTCTTCGTTGGGGAAATCCAAGTAGCCATCACCGACCTCGACC
TGACAAATATTGGCAGGACACAACGTCAGGCTGGTGTTGATGCGTTGATA
GCGCAGATTAAGTCGGACGGGTTTGACGAGAGGTATGCACCTGTAGTTTG
TCTCCTACACCGCCTCCCCGCCAACCAGACACTCGAGATGCTGTTGGCCG
CTGGAGGTATCAGGTTCAGAGTAATTGATGGTAATCATAGAGTAGCAGCT
TTGATCCAGCTTGCCGACGAGTCCCCAGCCGCGACAGCTACGAAACTAAT
CCCAGTGCGAGTATACCAGCCGATGACTCCGGCGACCGAGAGGATGGTAG
CAGCAGGCTGCAACAGGATTTCTTCTAACGTTGTCAAGACTCTACTGGTG
GACGAGATCGTCTGGTATAGAAATGTCATCCGCGCGTTGCAAGAACAGAA
CAAGGGCGAGGACATGTCCGAAGATCAGGTGCTCAGAGCCGTCAGGAACG
ACTTCAAGAACGCTGCAACAGGATTTCTTCTAACGTTGTCAAGACTCTAC
TGGTGGACGAGATCGTCTGGTATAGAAATGTCATCCGCGCGTTGCAAGAA
CAGAACAAGGGCGAGGACATGTCCGAAGATCAGGTGCTCAGAGCCGTCAG
GAACGACTTCAAGAACCAAAACCAGAAAGCGCCGTCCACTCCAACCCTGA
AGAAGTACGTCAGCATTGCCCTGAACATCGCGCCCATTGCCCTGGAGGCG
CTGAAGGACGTCAGCTTTCTTCCTGGGCGAGCCGAGAAGCACCCCGACCG
CACTCAACTCAACCACAAACGTGTGACCCTCAAGCTGTTGGAGCGCCCTG
AATTCCAGGCTATGACCCACTGCCAGCAGGAAGTCTACATTCTGCGATTG
GCAAACAAAACCAGAAAGCGCCGTCCACTCCAACCCTGAAGAAGTACGTC
AGCATTGCCCTGAACATCGCGCCCATTGCCCTGGAGGCGCTGAAGGACGT
CAGCTTTCTTCCTGGGCGAGCCGAGAAGCACCCCGACCGCACTCAACTCA
ACCACAAACGTGTGACCCTCAAGCTGTTGGAGCGCCCTGAATTCCAGGCT
ATGACCCACTGCCAGCAGGAAGTCTACATTCTGCGATTGGCAAAGGGCTC
GATCACCGTTAACAAGCAGCTCAATCAGGACCAGTGCAAAGTCCTCGACA
GCACGGCGCAATACGTGGGCGACGAAATTTCGCGCGTGGAGATGATTGCC
CCGCGTGCAATGTGGTCAGCGGATTTCAACATGGGCTCGATCACCGTTAA
CAAGCAGCTCAATCAGGACCAGTGCAAAGTCCTCGACAGCACGGCGCAAT
ACGTGGGCGACGAAATTTCGCGCGTGGAGATGATTGCCCCGCGTGCAATG
TGGTCAGCGGATTTCAACATCGGTATAAGAAAAGTCATGATTGCCGGGCT
CAAGAGCCGCTACTTCGTGCACGAGGACGGCTTGCAGAAGAGCGTCGAGT
CCTACCAGAAAACGCTTCTGGAGGGAATGGAGGATTCCGAGCCTCACATC
GACTTACTCCTCCGCGAACCTCACAACACCTCAGCACTGCGGTATAAGAA
AAGTCATGATTGCCGGGCTCAAGAGCCGCTACTTCGTGCACGAGGACGGC
TTGCAGAAGAGCGTCGAGTCCTACCAGAAAACGCTTCTGGAGGGAATGGA
GGATTCCGAGCCTCACATCGACTTACTCCTCCGCGAACCTCACAACACCT
CAGCACTGCTCCTCAAAGGCGACCCTGTCATGAAACCCAGGTGGGAAGCA
TTCGAGGAGGAGCGAAAGGCCAGTAAACAGCTCCTCAAAGGCGACCCTGT
CATGAAACCCAGGTGGGAAGCATTCGAGGAGGAGCGAAAGGCCAGTAAAC
AG
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