mRNA_C-linearis_contig8.15447.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15447.1
Unique NamemRNA_C-linearis_contig8.15447.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 6.870e-145
Identity = 206/257 (80.16%), Postives = 226/257 (87.94%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGIN 772
            WMDMHQHLPYSMARLACSSF+EGKWAGSEKAFEHAVGQE+ARA LL LWP+LYE AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EV+R+A+SA EKKE+V D   EN  PRVSGFDMIW+FPL YEWACHAI FAPIHQQLVES FST+DTCT+KHDSREID+VRLGQFRS  SRRVQRL A+NKEIR AGDKAIAVAR  K +A+HA+PNERQLRKR HDT QFLRD+S KSKHG N
Sbjct:    8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHGSN 264          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 1.620e-134
Identity = 205/273 (75.09%), Postives = 235/273 (86.08%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEES 820
            WMDMHQHLPYSMARLACSSF+EGKWAGSEKA EHAVGQE+ARA LL LWP+L E AEW GW+EEH +LEIL DDLSEA TT EKD+LTFGMFSKL+AS EFR EV+R+++SA EKKE+V D   E+  PRVSGFDMIW+FPL YEWA HAI FAPIHQQLV+SV STYDTCT+KHDSREI +VRLGQFRS QSRRVQRL A+NKEIR+AGDK IAVAR  K +A+ A+PN+ QLRKR  DT QFLRD+S KSKHG NW+V+SV++E++ SEES
Sbjct:  504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 2.270e-123
Identity = 193/274 (70.44%), Postives = 219/274 (79.93%), Query Frame = 2
Query:   32 SMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEESEAESNASDELS 853
            SM RLACSSFYEGKWAGSE+ FEHAVGQE ARALLL  WP+ YE+ EW+GWEE++TF E               +KLT GMFSKL AS EFR+E++R+A SAHEKK+VVSDV VEN TPRVSGFDMIW FP  YEWACHA+FFAPIHQQLVES  STYDT T+KHDSRE+D+VRLGQF SR SRRV+RLD+SN+EIRD GDKAIAVA   K +ASHAVPNERQLR  EHD  +FL+DKS KSKHG  W+VKSVMEE +LS   E+ES AS+ LS
Sbjct:  164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEE-VLSSSEESESEASENLS 421          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 7.850e-114
Identity = 183/285 (64.21%), Postives = 220/285 (77.19%), Query Frame = 2
Query:    5 MDMHQHLP-YSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSD-VGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMKSKHGINWIVKSVMEEDILSEESEAESNASDELS 853
            MD H   P     +++    YEGKWAG++KA EHAVG+EFARALL+ LWP+  E+AEWR W+EEH  L IL  DLSEA T GEKDKLTFGM+++L+ S EFRKEV+ +A SAHEKKEVVSD + V+NP PRVS F MIW FPL YEWA HAIF A IH+QLV SVFS YDTCT++HDSREID+VRLGQFRS QSRR+++L ASN EIR+AG+KAIA ARA + AAS AVPNERQ RKR HD TQF+R  + K+K+G  W V+SV++      ESE+ES+ S ELS
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD----MSESESESDVSAELS 281          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.340e-42
Identity = 98/237 (41.35%), Postives = 132/237 (55.70%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKR 712
            WM+ HQ LP SMAR+ C SF+       E A E AVG EFARA L V W  LYE       E E  +   L  DL        KD+LTFG+FS++D+    R E++++A S    KEV  D G    T   S    ++ FPL Y+  CH  +F PIHQQL+E+ FS +D+C +K D  E+D+VR+G ++S +SR +   DA+ ++IR AG K +  AR  K  +    P E   RKR
Sbjct:  233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEV--DQGAPKGT---SALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.320e-37
Identity = 90/229 (39.30%), Postives = 119/229 (51.97%), Query Frame = 2
Query:    5 MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDASNKEIRDAGDKAIAVARAFKTAASHAVPN 691
            M  HQ LP SMAR+ C SFY         A E AVG EFARA   V WP LYE       E E  +   L  DL        KD+LT G+FS +D     R E++++A S    KE+      E+     S    ++  PL Y   CH  +F PIHQQL+E+ FS YD+C KK D  E+D+VR+G ++S +SR +  +DA + +IR AG K +  A   K  +    PN
Sbjct:  235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEID-----ESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.080e-31
Identity = 80/190 (42.11%), Postives = 105/190 (55.26%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRS 571
            WM  HQ LP SMAR+ C SFY       + A E AVG E+ARA L V WP+ YE  E R  E E  +   L +D         KD+LTFG+FS ++   E R EV+ +A S    KEV  +   +  T  V  F+    FP  Y++ C   +F PIHQQL+E+ FS YDTC KK D   +D VR+G +++
Sbjct:  184 WMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYEG-EPRS-EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEV-DEEAEKGTTALVRLFEK---FPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.030e-26
Identity = 70/171 (40.94%), Postives = 86/171 (50.29%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQLVESVFSTYDTC 514
            WM  HQ LP SMAR+ C SFY         A E AVG EFARA L V WP LYE       E E  +   L  DL        KD+LTFG+FS +D     R E++++A S    KE+      E+     S    +  FPL Y+  CH  +F PIHQQL+E+ FS    C
Sbjct:  159 WMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYEGEP--RTEREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEID-----ESAPKSTSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVC 322          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.570e-24
Identity = 66/159 (41.51%), Postives = 84/159 (52.83%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEFRKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAIFFAPIHQQ 478
            WM+ HQ LP SMAR+ C SFY      +E A E AVG +FARA L V WP LY+       E E  F   L     E      KD+LTFG+FS +D+    R E++++A S    KEV  D G    T   S    ++ +PL Y+  CH  +F PIHQQ
Sbjct:  147 WMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLYDGEP--RTEREREFRTQLVKYSGEITEARRKDELTFGLFSCIDSDLSVRNELEQYANSGWSDKEV--DQGAPKGT---SALACLFDYPLLYKLVCHRFYFVPIHQQ 298          
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.080e-7
Identity = 30/55 (54.55%), Postives = 34/55 (61.82%), Query Frame = 2
Query:    2 WMDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPDLYEN 166
            WM+ HQ LP SMAR+AC SFY      ++ A E   G EFARA L V WP LYE 
Sbjct:  193 WMERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYEG 244          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JSZ3_9PHAE6.870e-14580.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE1.620e-13475.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE2.270e-12370.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ1_ECTSI7.850e-11464.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIQ1_ECTSI1.340e-4241.35Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE6.320e-3739.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR45_9PHAE2.080e-3142.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW8_9PHAE1.030e-2640.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQF6_9PHAE6.570e-2441.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE7.080e-754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:96140..96992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size853
Cds size849
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.7736468-UTR-C-linearis_contig8:96139..961431622930505.7736468-UTR-C-linearis_contig8:96139..96143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 96140..96143 +
1690881103.943114-UTR-C-linearis_contig8:96139..961431690881103.943114-UTR-C-linearis_contig8:96139..96143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 96140..96143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930505.78924-CDS-C-linearis_contig8:96143..969921622930505.78924-CDS-C-linearis_contig8:96143..96992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 96144..96992 +
1690881103.953313-CDS-C-linearis_contig8:96143..969921690881103.953313-CDS-C-linearis_contig8:96143..96992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 96144..96992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15447.1prot_C-linearis_contig8.15447.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 96144..96992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15447.1

>prot_C-linearis_contig8.15447.1 ID=prot_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MDMHQHLPYSMARLACSSFYEGKWAGSEKAFEHAVGQEFARALLLVLWPD
LYENAEWRGWEEEHTFLEILTDDLSEAATTGEKDKLTFGMFSKLDASDEF
RKEVDRFAVSAHEKKEVVSDVGVENPTPRVSGFDMIWAFPLPYEWACHAI
FFAPIHQQLVESVFSTYDTCTKKHDSREIDLVRLGQFRSRQSRRVQRLDA
SNKEIRDAGDKAIAVARAFKTAASHAVPNERQLRKREHDTTQFLRDKSMK
SKHGINWIVKSVMEEDILSEESEAESNASDELS
back to top

mRNA from alignment at C-linearis_contig8:96140..96992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15447.1 ID=mRNA_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at C-linearis_contig8:96140..96992+ (Chordaria linearis ClinC8C monoicous)
ATGGATGGACATGCACCAGCACCTCCCCTACAGCATGGCGAGGCTGGCTT GCAGCTCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAA CATGCTGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCC TGATCTTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGT TTCTCGAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAG AAAGATAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGA GTTCAGGAAAGAGGTGGACAGGTTTGCCGTATCTGCACACGAAAAGAAGG AGGTTGTCAGCGACGTCGGTGTCGAAAACCCGACACCAAGGGTCTCGGGC TTTGACATGATTTGGGCCTTCCCTCTGCCCTACGAGTGGGCGTGTCACGC AATATTTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAA CGTACGATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTC CGCCTCGGGCAGTTCCGCTCACGCCAGTCTAGGAGAGTACAGCGATTGGA CGCGAGCAACAAAGAAATTCGTGATGCGGGAGACAAGGCAATTGCTGTTG CGAGGGCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAA CTCCGAAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCAT GAAATCCAAGCATGGCATCAACTGGATTGTTAAGAGCGTGATGGAGGAGG ATATATTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCGTCCGATGAGCTG AGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:96140..96992+

>mRNA_C-linearis_contig8.15447.1 ID=mRNA_C-linearis_contig8.15447.1|Name=mRNA_C-linearis_contig8.15447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig8:96140..96992+ (Chordaria linearis ClinC8C monoicous)
ATGGACATGCACCAGCACCTCCCCTACAGCATGGCGAGGCTGGCTTGCAG
CTCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAACATG
CTGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGAT
CTTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGTTTCT
CGAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAGAAAG
ATAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGAGTTC
AGGAAAGAGGTGGACAGGTTTGCCGTATCTGCACACGAAAAGAAGGAGGT
TGTCAGCGACGTCGGTGTCGAAAACCCGACACCAAGGGTCTCGGGCTTTG
ACATGATTTGGGCCTTCCCTCTGCCCTACGAGTGGGCGTGTCACGCAATA
TTTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAACGTA
CGATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTCCGCC
TCGGGCAGTTCCGCTCACGCCAGTCTAGGAGAGTACAGCGATTGGACGCG
AGCAACAAAGAAATTCGTGATGCGGGAGACAAGGCAATTGCTGTTGCGAG
GGCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAACTCC
GAAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCATGAAA
TCCAAGCATGGCATCAACTGGATTGTTAAGAGCGTGATGGAGGAGGATAT
ATTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCGTCCGATGAGCTGAGTA
TGGACATGCACCAGCACCTCCCCTACAGCATGGCGAGGCTGGCTTGCAGC
TCGTTCTATGAGGGAAAGTGGGCGGGTTCGGAAAAGGCTTTTGAACATGC
TGTTGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCTGATC
TTTACGAGAACGCGGAGTGGAGGGGGTGGGAGGAGGAACACACGTTTCTC
GAGATTTTGACGGATGACCTTTCGGAGGCAGCCACGACCGGGGAGAAAGA
TAAGCTGACGTTTGGCATGTTTTCGAAGTTAGATGCGAGTGATGAGTTCA
GGAAAGAGGTGGACAGGTTTGCCGTATCTGCACACGAAAAGAAGGAGGTT
GTCAGCGACGTCGGTGTCGAAAACCCGACACCAAGGGTCTCGGGCTTTGA
CATGATTTGGGCCTTCCCTCTGCCCTACGAGTGGGCGTGTCACGCAATAT
TTTTTGCCCCGATTCACCAGCAGCTCGTCGAAAGTGTTTTCTCAACGTAC
GATACATGCACCAAGAAACATGATTCTAGGGAGATTGATCTCGTCCGCCT
CGGGCAGTTCCGCTCACGCCAGTCTAGGAGAGTACAGCGATTGGACGCGA
GCAACAAAGAAATTCGTGATGCGGGAGACAAGGCAATTGCTGTTGCGAGG
GCGTTCAAAACGGCTGCCTCTCACGCAGTTCCGAACGAGAGGCAACTCCG
AAAACGAGAGCATGACACCACGCAGTTTTTGAGAGACAAGAGCATGAAAT
CCAAGCATGGCATCAACTGGATTGTTAAGAGCGTGATGGAGGAGGATATA
TTGTCTGAGGAGTCTGAGGCTGAGAGTAATGCGTCCGATGAGCTGAGT
back to top