mRNA_C-linearis_contig79.15445.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15445.1
Unique NamemRNA_C-linearis_contig79.15445.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:890647..891085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15445.1prot_C-linearis_contig79.15445.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 890657..891085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.846761-UTR-C-linearis_contig79:890646..8906561622930486.846761-UTR-C-linearis_contig79:890646..890656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 890647..890656 +
1690881094.8809264-UTR-C-linearis_contig79:890646..8906561690881094.8809264-UTR-C-linearis_contig79:890646..890656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 890647..890656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930486.8647556-CDS-C-linearis_contig79:890656..8908061622930486.8647556-CDS-C-linearis_contig79:890656..890806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 890657..890806 +
1690881094.8997824-CDS-C-linearis_contig79:890656..8908061690881094.8997824-CDS-C-linearis_contig79:890656..890806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 890657..890806 +
1622930486.8810542-CDS-C-linearis_contig79:890965..8910851622930486.8810542-CDS-C-linearis_contig79:890965..891085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 890966..891085 +
1690881094.9120097-CDS-C-linearis_contig79:890965..8910851690881094.9120097-CDS-C-linearis_contig79:890965..891085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 890966..891085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15445.1

>prot_C-linearis_contig79.15445.1 ID=prot_C-linearis_contig79.15445.1|Name=mRNA_C-linearis_contig79.15445.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=90bp
MGPKRSKVRSAKAAAVAAEGNTKRAAERAERDQFGRNLKRAKGELIPKDA
ARAILHTFHVLTGKSGRDGAEALSERNAIIRTSNLLGYDD
back to top

mRNA from alignment at C-linearis_contig79:890647..891085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15445.1 ID=mRNA_C-linearis_contig79.15445.1|Name=mRNA_C-linearis_contig79.15445.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=439bp|location=Sequence derived from alignment at C-linearis_contig79:890647..891085+ (Chordaria linearis ClinC8C monoicous)
TCACACAGCCATGGGGCCCAAAAGAAGTAAAGTGAGGTCCGCCAAAGCTG
CAGCGGTTGCCGCGGAGGGGAACACGAAGAGGGCGGCGGAGAGGGCCGAA
CGGGATCAATTCGGCAGGAACCTGAAGCGGGCCAAGGGAGAACTCATTCC
CAAGGACGCGGTGAGTTGCCCGGTGGTTGGTTATCGAGAGAAAAACATGT
TGGATCAAGCACCCTCCGCGAGCAGCTCTCTGTCCGCTGCCTCAACCTTT
TGGACGCGTCGCAGCGGCACTGATCGATCCCCTCTCGTACCCCGCCCAAC
GACCCACCCGCCCGCCCAGGCTCGTGCTATCCTCCACACGTTCCACGTCC
TCACGGGCAAGAGCGGTCGCGATGGCGCGGAGGCGCTTTCGGAAAGGAAC
GCCATCATCAGGACCTCCAACCTCCTCGGCTACGACGAT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig79:890647..891085+

>mRNA_C-linearis_contig79.15445.1 ID=mRNA_C-linearis_contig79.15445.1|Name=mRNA_C-linearis_contig79.15445.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at C-linearis_contig79:890647..891085+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCCCAAAAGAAGTAAAGTGAGGTCCGCCAAAGCTGCAGCGGTTGC
CGCGGAGGGGAACACGAAGAGGGCGGCGGAGAGGGCCGAACGGGATCAAT
TCGGCAGGAACCTGAAGCGGGCCAAGGGAGAACTCATTCCCAAGGACGCG
ATGGGGCCCAAAAGAAGTAAAGTGAGGTCCGCCAAAGCTGCAGCGGTTGC
CGCGGAGGGGAACACGAAGAGGGCGGCGGAGAGGGCCGAACGGGATCAAT
TCGGCAGGAACCTGAAGCGGGCCAAGGGAGAACTCATTCCCAAGGACGCG
GCTCGTGCTATCCTCCACACGTTCCACGTCCTCACGGGCAAGAGCGGTCG
CGATGGCGCGGAGGCGCTTTCGGAAAGGAACGCCATCATCAGGACCTCCA
ACCTCCTCGGCTACGACGATGCTCGTGCTATCCTCCACACGTTCCACGTC
CTCACGGGCAAGAGCGGTCGCGATGGCGCGGAGGCGCTTTCGGAAAGGAA
CGCCATCATCAGGACCTCCAACCTCCTCGGCTACGACGAT
back to top