mRNA_C-linearis_contig79.15443.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE) HSP 1 Score: 318 bits (816), Expect = 3.480e-98 Identity = 181/280 (64.64%), Postives = 211/280 (75.36%), Query Frame = 2
Query: 1241 PFQLKEVEEATLNKIQQRYDSVHPRLESLFPDDATTRAECIREMNASVKLLRETGTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVHRFINNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGG--SGVVGLRSATTAPPP 2074
PFQLK++++ATL+KIQQRYDSVHPRLE+L+PDD R E IREMN SV+LLRE GTK WDLPSLT AG DDSSD XXXXXXXXX AL + V P ALPDG + G GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS+VE+++ A D GG S +V TAPPP
Sbjct: 110 PFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKDWDLPSLTSAAGLDDSSDXXXXXXXXXXXXXXXXXXAL-------DTVSPQALPDGSLVGGEGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQGGEWAAGDPGGERSAIV---QPPTAPPP 379
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI) HSP 1 Score: 303 bits (777), Expect = 5.110e-93 Identity = 168/279 (60.22%), Postives = 204/279 (73.12%), Query Frame = 2
Query: 1241 PFQLKEVEEATLNKIQQRYDSVHPRLESLFPDDATTRAECIREMNASVKLLRETGTKAWDLPSLTRRAG-QDDSSDGEXXXXXXXXXERLNDSGALGNVHRFINNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSATTAPPP 2074
PF+LK VE+ TL KIQQRYDSV PRLE+LFPDD R+E +REMN SV+LLRETGTK WDLPSLTR AG DSSD EXXXXXXXXX ++ + P+ALPDGP+ G GGA LRL+ GWFAV PLE++N LVVG+I+SV S E+G +V +NWFAPV+RKKCRRS+YGRG+WSQ FLK+ N+ TPDQ TES+K+VCFTF+SLLQSGKLP+ VWAAVEESVP SS +E++++ D + +G G G G G + AP P
Sbjct: 59 PFELKAVEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKDWDLPSLTRTAGLHTDSSDDEXXXXXXXXXXXX--XXXXXXXXXALDTMSPEALPDGPLTESGGGGAGNSLRLQPGWFAVLPLEMTNTCPLVVGQIVSVESGGENGGEVLINWFAPVSRKKCRRSRYGRGVWSQQFLKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEAETDDSDSDADGVEGGGAAG-GCRGEEQSGLAPSP 334
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 302 bits (773), Expect = 8.730e-88 Identity = 162/352 (46.02%), Postives = 217/352 (61.65%), Query Frame = 3
Query: 234 ENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPH---ITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAGP--PHELFVGSVPDVEEDAPRFS*RKLKRRP 1274
++R H++ + GG+FMKC C K+ R G+PG++PS + + L++ H + ++ DR + AM AKAD PL V + DAA + LP THG DRGYSERQK+MAV +EGQF++V+ TPQ LGGGCNL CT+ H R+ + + + P I H QVDNCVSENKN+ LGY G L+A V+ VE+HFM VGHTH KIDQVFSRFS G K N+FTR A A+YT++PV +TLRN GNFKG+LI V ++ +T RAF++ K G +V V +K+ MH + G+ DG PH+LF+GS P ++ DAP + KLKR P
Sbjct: 48 KDRPHIRVRVGGEFMKCDICVTLKERRHGSPGVKPSLDSSALASIDRDLAAHRQMVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRV--NRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQ-DAPPY---KLKRVP 393
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 251 bits (642), Expect = 5.660e-71 Identity = 145/326 (44.48%), Postives = 189/326 (57.98%), Query Frame = 3
Query: 276 MKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
MKC CT K+ GAPGIRP N + H + DR L + A +A+ PL V++Q D A QI + L GT+ T G+SERQKVMAV EG F+DV PQ GGG NL+CT+L RL M G R +I L LQ+DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G ++FTR+Q F +Y +LPVH TL NLGNFKG+ + + ++K+ +T RAF++ K +V+V K+FMH +A+ GLT G PH LF + P + P
Sbjct: 1 MKCSDCTEIKEKLHGAPGIRPIQNTRQRAEIVRHQKEHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQIRYAL---GTVHPQTHAGFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAG-EVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTFDNVPP 322
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE) HSP 1 Score: 234 bits (597), Expect = 4.040e-69 Identity = 132/197 (67.01%), Postives = 149/197 (75.63%), Query Frame = 2
Query: 1370 MNASVKLLRETGTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVHRFINNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSS 1960
MN SV+LLRE GTK WDLPSLT AG DDSSD XXXXXXXXX AL + V P ALPDG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEES SS
Sbjct: 1 MNLSVQLLRERGTKDWDLPSLTSAAGLDDSSDXXXXXXXXXXXXXXXXXXAL-------DTVSPQALPDGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESQGKSS 190
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE) HSP 1 Score: 214 bits (546), Expect = 9.910e-60 Identity = 109/167 (65.27%), Postives = 132/167 (79.04%), Query Frame = 2
Query: 1574 DGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSATTAPPP 2074
DG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+ LKEGN+ T DQGTESVKAVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS++E++++ RAG D GG ++ TAPPP
Sbjct: 165 DGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVPISSLEESDSDIEEEQRRERAGGDLGGERSAKVQP-PTAPPP 330
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 210 bits (535), Expect = 2.220e-54 Identity = 122/314 (38.85%), Postives = 175/314 (55.73%), Query Frame = 3
Query: 249 VKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTD-RGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAG 1187
+K K GDFM C CT+ K+ G G R + A + + HL+ +E DR R E +A AK++ P V LQ DAA Q F P+ + HG D RGY+ERQK+ LV G + VF+ PQ LG G N++CT+L F M + + + + +Q+DN VSENKN+ ++G+L AL+ GV+ +V + FM VGHTHI+IDQVFS F+ K +FTR A F +AY LPV TL NL NFK ++ P +++ +TK +AF + K+G + +K +H + + G + DG G
Sbjct: 325 LKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLFTLF-----MELTLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQP--VTRRIPNITKFQAFNISKEGTA-IVAKVKTKLHHDDWLGFSADGKTVG 630
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE) HSP 1 Score: 196 bits (497), Expect = 3.360e-50 Identity = 109/231 (47.19%), Postives = 140/231 (60.61%), Query Frame = 3
Query: 561 GYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCV--KKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
G SERQKVMAV EG F+DV PQ GGG NL+CT+L RL EM G R HI L LQ+DNCV ENKN+I++ ++G L+A GVIG+ EV F+ VGHTH K DQVFSR S G ++FTR Q F +Y +LPV T NLGNFKG+ + + + +K+ MT RAF++ K +V+V + +FMH +A+ GLT G PH LF + P P
Sbjct: 208 GLSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPVRIGTPTNLGNFKGLYLADIKLNLRKIRNMTTFRAFRVGKIAG-EVSVWVDRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTFNNVPP 437
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5J810_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J810_9PHAE) HSP 1 Score: 182 bits (463), Expect = 3.830e-47 Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 2
Query: 1403 GTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVHRFINNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAV 1873
GTK WDLPSLT AG DDSSD XXXXXXXXX AL + V P ALPDG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESVKAV
Sbjct: 129 GTKDWDLPSLTTAAGLDDSSDXXXXXXXXXXXXXXXXXXAL-------DTVSPQALPDGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVKAV 278
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.840e-44 Identity = 94/202 (46.53%), Postives = 126/202 (62.38%), Query Frame = 3
Query: 648 GCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
G NL+CT+L RL M G R +I L LQ+DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G ++FTR+Q F +Y +LPVH TL NLGNFKG+ + + ++K+ +T RAF++ K +V+V K+FMH +A+ LT G A PH LF + P + P
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAG-EVSVWAKRFMHSDAWLDLTATGGAQVAANPHRLFRFAAPTFDNVPP 210 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15443.1 >prot_C-linearis_contig79.15443.1 ID=prot_C-linearis_contig79.15443.1|Name=mRNA_C-linearis_contig79.15443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=342bp MEENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAback to top mRNA from alignment at C-linearis_contig79:863348..875690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15443.1 ID=mRNA_C-linearis_contig79.15443.1|Name=mRNA_C-linearis_contig79.15443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=12343bp|location=Sequence derived from alignment at C-linearis_contig79:863348..875690+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:863348..875690+ >mRNA_C-linearis_contig79.15443.1 ID=mRNA_C-linearis_contig79.15443.1|Name=mRNA_C-linearis_contig79.15443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at C-linearis_contig79:863348..875690+ (Chordaria linearis ClinC8C monoicous)back to top |