mRNA_C-linearis_contig79.15432.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15432.1
Unique NamemRNA_C-linearis_contig79.15432.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15432.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.880e-13
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    7 NNTRRATNAQLARTPLKYVVIQADAAAQTAFALPMQSTMTHGTDRGYSERQKIIAILVEGEFLEVFLTPQTLG 225
            N T  A  A+    PL +V +  DAA  T+ ALP     THG DRGYSERQKI+A+ +EG+F+EV+ TPQ LG
Sbjct:  112 NRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLG 184
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BLAST of mRNA_C-linearis_contig79.15432.1 vs. uniprot
Match: D8LJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.540e-13
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 RRATNAQLARTPLKYVVIQADAAAQTAFALPMQSTMTHGTDRGYSERQKIIAILVEGEFLEVFLTPQTLG 225
            RRA  A+    P ++     DAAAQ  F++P  S MTHGTDRG+ ERQKI A+L EG  + V   PQ LG
Sbjct:    3 RRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILG 72
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE2.880e-1352.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG9_ECTSI3.540e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:663887..664802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930498.2441263-CDS-C-linearis_contig79:663886..6639711622930498.2441263-CDS-C-linearis_contig79:663886..663971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 663887..663971 -
1690881100.568563-CDS-C-linearis_contig79:663886..6639711690881100.568563-CDS-C-linearis_contig79:663886..663971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 663887..663971 -
1622930498.2614849-CDS-C-linearis_contig79:664662..6648021622930498.2614849-CDS-C-linearis_contig79:664662..664802Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 664663..664802 -
1690881100.5811405-CDS-C-linearis_contig79:664662..6648021690881100.5811405-CDS-C-linearis_contig79:664662..664802Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 664663..664802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15432.1prot_C-linearis_contig79.15432.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 663887..664802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15432.1

>prot_C-linearis_contig79.15432.1 ID=prot_C-linearis_contig79.15432.1|Name=mRNA_C-linearis_contig79.15432.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
MDNNTRRATNAQLARTPLKYVVIQADAAAQTAFALPMQSTMTHGTDRGYS
ERQKIIAILVEGEFLEVFLTPQTLG
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mRNA from alignment at C-linearis_contig79:663887..664802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15432.1 ID=mRNA_C-linearis_contig79.15432.1|Name=mRNA_C-linearis_contig79.15432.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at C-linearis_contig79:663887..664802- (Chordaria linearis ClinC8C monoicous)
ATGGACAATAACACCCGGCGAGCGACAAATGCCCAGCTCGCTCGCACCCC
GTTGAAGTACGTCGTCATCCAAGCGGACGCCGCAGCCCAGACCGCTTTCG
CGCTGCCGATGCAGTCAACCATGACCCACGGAACGGACAGGTATGAAGGG
ATCTGATGTGTTTTCCTAACTGCTGTTGCACGTGAGTGCATGTTTTCTTA
TTTATCGTGTCTCACGCAAGGCCTAACCAACGGAAGCTGATAGTTAGGGG
AGGTCTCAGGGCTGACGTAGAACGCTAGTAGTGGTTGTTGTGATGTTTGA
GGGAGGCCGCCAAATACACTCACTTTCTTTTTGCGTGTTGTTTGTTAACA
AATATTCTGTAGATGAGCCAAGTCGACTAACCCTTCACACTACCCCTTAG
TAGGTCGTGATCTTCCATGGAACACATCGTAGGTAGGTGCGCAGCACGCG
TGCCCTATAGGCCCGCACGAGGAACAGATCATTCTGTACCTACTACCGTG
GCACAGGAGTTAATAGCGGCGCAGGGGCATACTTTGCCTCTGAAATGAAC
CTTCGGAGACCGTCGTTGGTACTATCTATGATGCAACGTTCGTCGAATCG
TAGTCTGTAGGCACAGCAGTAGCTTGGGGTTGTTGCGTCAAGTGCATGAC
GATTGAGATTCGGGGTGGCGCATTCATCCCCTCGCCCTCATTGAGCAGGG
TTCACAATGGTCAATAGTTCGTGTGAAATAATCGGGATCTTGTAACGCGA
TTTGTTGTCACGCCACAACGTCCGAGCGCAGCTCTCCCCTTTTTGGCTAT
CTATGCTTCATTTTGTTCGACCAATTCCCAGGGGTTACTCTGAAAGGCAA
AAGATCATCGCCATCCTGGTCGAGGGAGAGTTCCTCGAAGTATTTCTCAC
GCCGCAGACCCTTGGA
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Coding sequence (CDS) from alignment at C-linearis_contig79:663887..664802-

>mRNA_C-linearis_contig79.15432.1 ID=mRNA_C-linearis_contig79.15432.1|Name=mRNA_C-linearis_contig79.15432.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at C-linearis_contig79:663887..664802- (Chordaria linearis ClinC8C monoicous)
ATGGACAATAACACCCGGCGAGCGACAAATGCCCAGCTCGCTCGCACCCC
GTTGAAGTACGTCGTCATCCAAGCGGACGCCGCAGCCCAGACCGCTTTCG
CGCTGCCGATGCAGTCAACCATGACCCACGGAACGGACAGATGGACAATA
ACACCCGGCGAGCGACAAATGCCCAGCTCGCTCGCACCCCGTTGAAGTAC
GTCGTCATCCAAGCGGACGCCGCAGCCCAGACCGCTTTCGCGCTGCCGAT
GCAGTCAACCATGACCCACGGAACGGACAGGGGTTACTCTGAAAGGCAAA
AGATCATCGCCATCCTGGTCGAGGGAGAGTTCCTCGAAGTATTTCTCACG
CCGCAGACCCTTGGAGGGTTACTCTGAAAGGCAAAAGATCATCGCCATCC
TGGTCGAGGGAGAGTTCCTCGAAGTATTTCTCACGCCGCAGACCCTTGGA
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