mRNA_C-linearis_contig79.15428.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15428.1
Unique NamemRNA_C-linearis_contig79.15428.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15428.1 vs. uniprot
Match: A0A6H5JDU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.070e-14
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = -3 
Query:   11 GEMVFGIEGGDDSSGDEVAKLFGEEDMQAADLRCVDS-SSGSEGLLFGGYNGDSGDCTSSDESGVEWSDDEEGPQSLGGAPGLPVAEDPQQESSPQPSAELLDDQ-SHAA 334
            G +VF +EGG D  GDE+   FG++ M+  D+ C+D+ SS SEGL+FGGY GDS DCTSS+ES +EWSD E+  +     P   V ++P +  + + SAELL +  +HAA
Sbjct:   31 GAVVFEVEGGGDD-GDELCNWFGQDAMEQVDV-CLDACSSASEGLIFGGYAGDSADCTSSEESNMEWSDVEQKLEQTPKQPSQGVLQNPDR-CADRDSAELLPNSGNHAA 137
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BLAST of mRNA_C-linearis_contig79.15428.1 vs. uniprot
Match: A0A6H5JDC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.460e-13
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = -3 
Query:  122 GEMVFGIEGGDDSSGDEVAKLFGEEDMQAADLRCVDS-SSGSEGLLFGGYNGDSGDCTSSDESGVEWSDDEE 334
            G +VF +EGG D  GDE+   FG++ M+  D+ C+D+ SS SEGL+FGGY GDS DCTSS+ES +EWSD E+
Sbjct:   31 GAVVFEVEGGRDD-GDELCNWFGQDAMEQVDV-CLDACSSASEGLIFGGYAGDSADCTSSEESNMEWSDVEQ 100
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BLAST of mRNA_C-linearis_contig79.15428.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.270e-12
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = -3 
Query:  122 GEMVFGIEGGDDSSGDEVAKLFGEEDMQAADLRCVDS-SSGSEGLLFGGYNGDSGDCTSSDESGVEWSDDEE 334
            G +VF +EGG D  GDE+   FG++ M+  D+ C+D+ SS SEGL+FGGY GDS DCTSS+ES +EWSD E+
Sbjct:  142 GAVVFEVEGGGDD-GDELCNWFGQDAMEQVDV-CLDACSSASEGLIFGGYAGDSADCTSSEESNMEWSDVEQ 211
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BLAST of mRNA_C-linearis_contig79.15428.1 vs. uniprot
Match: A0A6H5KGT3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.630e-11
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = -3 
Query:  113 GEMVFGIEGGDDSSGDEVAKLFGEEDMQAADLRCVDSSSGSEGLLFGGYNGDSGDCTSSDESGVEWSDDEEGPQ 334
            G +VF IEGG D  GDE+   FGEEDM+  D+     SSGSEGL+FGGY GDSGDC+S ++   E +D EE PQ
Sbjct:  137 GAVVFEIEGGGDD-GDELRNWFGEEDMRDVDVCLEGRSSGSEGLIFGGYLGDSGDCSSGEDD-AESNDAEEMPQ 208
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDU6_9PHAE9.070e-1447.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDC4_9PHAE2.460e-1356.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE1.270e-1256.94Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGT3_9PHAE2.630e-1156.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:648834..649175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.5770972-CDS-C-linearis_contig79:648833..6491751622930487.5770972-CDS-C-linearis_contig79:648833..649175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 648834..649175 +
1690881095.017261-CDS-C-linearis_contig79:648833..6491751690881095.017261-CDS-C-linearis_contig79:648833..649175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 648834..649175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15428.1prot_C-linearis_contig79.15428.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 648834..649175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15428.1

>prot_C-linearis_contig79.15428.1 ID=prot_C-linearis_contig79.15428.1|Name=mRNA_C-linearis_contig79.15428.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
GTSARRDFDHPAALPKAEASFLAAGPLPPGVLELLQATAVPPHRRSIPHR
TRRKTCSRLSRHCIPRRGGPQIPSCCPHTADRLLACPLLQTTWRPRLHCC
RRRPLSQRPSRHP*
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mRNA from alignment at C-linearis_contig79:648834..649175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15428.1 ID=mRNA_C-linearis_contig79.15428.1|Name=mRNA_C-linearis_contig79.15428.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at C-linearis_contig79:648834..649175+ (Chordaria linearis ClinC8C monoicous)
GGGACCTCCGCGCGGCGTGACTTTGATCATCCAGCAGCTCTGCCGAAGGC
TGAGGCGAGCTTTCTTGCTGCGGGTCCTCTGCCACCGGGAGTCCTGGAGC
TCCTCCAAGCGACTGCGGTCCCTCCTCATCGTCGCTCCATTCCACACCGG
ACTCGTCGGAAGACGTGCAGTCGCCTGAGTCGCCATTGTATCCCCCGAAG
AGGAGGCCCTCAGATCCCGAGCTGCTGTCCACACACCGCAGATCGGCTGC
TTGCATGTCCTCTTCTCCAAACAACTTGGCGACCTCGTCTCCACTGCTGT
CGTCGCCGCCCTCTATCCCAAAGACCATCTCGCCACCCTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig79:648834..649175+

>mRNA_C-linearis_contig79.15428.1 ID=mRNA_C-linearis_contig79.15428.1|Name=mRNA_C-linearis_contig79.15428.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig79:648834..649175+ (Chordaria linearis ClinC8C monoicous)
GGGACCTCCGCGCGGCGTGACTTTGATCATCCAGCAGCTCTGCCGAAGGC
TGAGGCGAGCTTTCTTGCTGCGGGTCCTCTGCCACCGGGAGTCCTGGAGC
TCCTCCAAGCGACTGCGGTCCCTCCTCATCGTCGCTCCATTCCACACCGG
ACTCGTCGGAAGACGTGCAGTCGCCTGAGTCGCCATTGTATCCCCCGAAG
AGGAGGCCCTCAGATCCCGAGCTGCTGTCCACACACCGCAGATCGGCTGC
TTGCATGTCCTCTTCTCCAAACAACTTGGCGACCTCGTCTCCACTGCTGT
CGTCGCCGCCCTCTATCCCAAAGACCATCTCGCCACCCTTGAGGGACCTC
CGCGCGGCGTGACTTTGATCATCCAGCAGCTCTGCCGAAGGCTGAGGCGA
GCTTTCTTGCTGCGGGTCCTCTGCCACCGGGAGTCCTGGAGCTCCTCCAA
GCGACTGCGGTCCCTCCTCATCGTCGCTCCATTCCACACCGGACTCGTCG
GAAGACGTGCAGTCGCCTGAGTCGCCATTGTATCCCCCGAAGAGGAGGCC
CTCAGATCCCGAGCTGCTGTCCACACACCGCAGATCGGCTGCTTGCATGT
CCTCTTCTCCAAACAACTTGGCGACCTCGTCTCCACTGCTGTCGTCGCCG
CCCTCTATCCCAAAGACCATCTCGCCACCCTTGA
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