mRNA_C-linearis_contig79.15421.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15421.1
Unique NamemRNA_C-linearis_contig79.15421.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:573682..574575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size894
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15421.1prot_C-linearis_contig79.15421.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 573886..574341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.4272835-UTR-C-linearis_contig79:573681..5738851622930487.4272835-UTR-C-linearis_contig79:573681..573885Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 573682..573885 +
1690881094.944834-UTR-C-linearis_contig79:573681..5738851690881094.944834-UTR-C-linearis_contig79:573681..573885Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 573682..573885 +
1622930487.4615233-UTR-C-linearis_contig79:574341..5745751622930487.4615233-UTR-C-linearis_contig79:574341..574575Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 574342..574575 +
1690881094.9679894-UTR-C-linearis_contig79:574341..5745751690881094.9679894-UTR-C-linearis_contig79:574341..574575Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 574342..574575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.4466717-CDS-C-linearis_contig79:573885..5743411622930487.4466717-CDS-C-linearis_contig79:573885..574341Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 573886..574341 +
1690881094.9560173-CDS-C-linearis_contig79:573885..5743411690881094.9560173-CDS-C-linearis_contig79:573885..574341Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 573886..574341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15421.1

>prot_C-linearis_contig79.15421.1 ID=prot_C-linearis_contig79.15421.1|Name=mRNA_C-linearis_contig79.15421.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MSKAGRGTCGRSRGFLLPTAVSALVGVGVDWTLMFGSALGMPPGGAWLAP
ALLLLLLSSAGNTQSVNFSAPAANNNTKQSEAIRASSRRSGNGVPTMRRH
VWDACQDRAWNECPKYQHAGAMGTDKDCKGTCSTFELYSVVSLEYENNWV
R*
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mRNA from alignment at C-linearis_contig79:573682..574575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15421.1 ID=mRNA_C-linearis_contig79.15421.1|Name=mRNA_C-linearis_contig79.15421.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at C-linearis_contig79:573682..574575+ (Chordaria linearis ClinC8C monoicous)
CCGACAAGCCTGCCTGCCCAAGGTATTCGCCACCGCCGACATACCATCGC
TGGGTGGCTGTGGTAGCTAAGCGCAAGATTCATTACCGACGACATCTATC
TATGTCTCTGGCTCACGAGACTCTGCTGGCCGGCTCTGCTCGAAGGTTAC
TGGTCGGTAGCGGAGGAAGTCGTCGGACCGTGCCGGCACAGGGAACAGAC
GAAGATGAGCAAAGCAGGACGAGGCACCTGTGGCCGTTCTCGTGGTTTCC
TGCTCCCGACAGCAGTAAGTGCGCTTGTCGGCGTGGGGGTAGATTGGACG
CTCATGTTTGGGTCGGCCCTCGGAATGCCGCCCGGAGGTGCCTGGTTGGC
GCCTGCTCTGCTGCTACTGCTTCTCTCGTCCGCGGGAAACACTCAATCGG
TGAATTTCAGCGCCCCTGCGGCCAACAACAACACCAAGCAGTCGGAAGCA
ATCCGCGCTTCAAGTAGGAGATCCGGAAATGGAGTGCCCACGATGCGACG
CCATGTTTGGGATGCTTGCCAGGACAGAGCTTGGAACGAATGTCCAAAAT
ATCAGCATGCAGGTGCGATGGGCACAGATAAAGATTGCAAGGGTACCTGT
TCAACCTTCGAACTCTACTCCGTAGTTTCCCTAGAATACGAAAACAATTG
GGTGCGATAGTCAAATATCTGTTGCACGGTCAGGTTCTGTAGGGTATGGG
TAAGCTCGGTAGGGTATGAGTTACAGAACCCACAGAAGTTCTCGGTAGGG
CACCGAAACTGTCACAGAACTTACAGAAGTATTGTGGGTAGGGCTAGGTC
TGGCTGCAGCAGCCAGTACACCACTACTCTACCAGTACTTTGGGCACGCG
GCATAGCCGCGACCACCGGCCCCCCCCGGCTGGCGAGGGGGCCC
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Coding sequence (CDS) from alignment at C-linearis_contig79:573682..574575+

>mRNA_C-linearis_contig79.15421.1 ID=mRNA_C-linearis_contig79.15421.1|Name=mRNA_C-linearis_contig79.15421.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig79:573682..574575+ (Chordaria linearis ClinC8C monoicous)
ATGAGCAAAGCAGGACGAGGCACCTGTGGCCGTTCTCGTGGTTTCCTGCT
CCCGACAGCAGTAAGTGCGCTTGTCGGCGTGGGGGTAGATTGGACGCTCA
TGTTTGGGTCGGCCCTCGGAATGCCGCCCGGAGGTGCCTGGTTGGCGCCT
GCTCTGCTGCTACTGCTTCTCTCGTCCGCGGGAAACACTCAATCGGTGAA
TTTCAGCGCCCCTGCGGCCAACAACAACACCAAGCAGTCGGAAGCAATCC
GCGCTTCAAGTAGGAGATCCGGAAATGGAGTGCCCACGATGCGACGCCAT
GTTTGGGATGCTTGCCAGGACAGAGCTTGGAACGAATGTCCAAAATATCA
GCATGCAGGTGCGATGGGCACAGATAAAGATTGCAAGGGTACCTGTTCAA
CCTTCGAACTCTACTCCGTAGTTTCCCTAGAATACGAAAACAATTGGGTG
CGATAGATGAGCAAAGCAGGACGAGGCACCTGTGGCCGTTCTCGTGGTTT
CCTGCTCCCGACAGCAGTAAGTGCGCTTGTCGGCGTGGGGGTAGATTGGA
CGCTCATGTTTGGGTCGGCCCTCGGAATGCCGCCCGGAGGTGCCTGGTTG
GCGCCTGCTCTGCTGCTACTGCTTCTCTCGTCCGCGGGAAACACTCAATC
GGTGAATTTCAGCGCCCCTGCGGCCAACAACAACACCAAGCAGTCGGAAG
CAATCCGCGCTTCAAGTAGGAGATCCGGAAATGGAGTGCCCACGATGCGA
CGCCATGTTTGGGATGCTTGCCAGGACAGAGCTTGGAACGAATGTCCAAA
ATATCAGCATGCAGGTGCGATGGGCACAGATAAAGATTGCAAGGGTACCT
GTTCAACCTTCGAACTCTACTCCGTAGTTTCCCTAGAATACGAAAACAAT
TGGGTGCGATAG
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