mRNA_C-linearis_contig79.15415.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15415.1
Unique NamemRNA_C-linearis_contig79.15415.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: D8LJE9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE9_ECTSI)

HSP 1 Score: 961 bits (2483), Expect = 0.000e+0
Identity = 527/605 (87.11%), Postives = 541/605 (89.42%), Query Frame = 1
Query:   10 GTSVKLYGRKKEAALXXXXXXXXXXXXXXXXXXGGDADARREALAGEDESYDEYVPLRERRRREAERRAGKLGKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDHGDADKGDKAPPAGPGEEGGKKPRTLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            GTSVKLYGR+KE +                       DAR EALAGEDE YDEY+PL+ERRRREAERRAGKLGKN          XXXXXXXXXXXXXXXXXXXXXX       +      AGPG EG KKPRTLLEAAKELKKATAN+DAGT+KQMRAKEEEHRMLKEANQVQTNALMSAAEVA+GTRYTEALTTSWRPPK+YRDMTEE+CDKLREKWSILVDG+KVPPPIKSFREMKLP+PML+ALEAKGIKRPTPIQ         VQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHT KVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEG KDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINK  +ES
Sbjct:    3 GTSVKLYGRRKEESAAAGK------------------DARLEALAGEDEGYDEYIPLKERRRREAERRAGKLGKNRRDRERARLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAEAAAGPGAEGSKKPRTLLEAAKELKKATANLDAGTIKQMRAKEEEHRMLKEANQVQTNALMSAAEVAKGTRYTEALTTSWRPPKYYRDMTEEDCDKLREKWSILVDGEKVPPPIKSFREMKLPDPMLAALEAKGIKRPTPIQ---------VQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGVKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKMVEES 580          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A836CIR5_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR5_9STRA)

HSP 1 Score: 756 bits (1952), Expect = 7.450e-269
Identity = 379/484 (78.31%), Postives = 430/484 (88.84%), Query Frame = 1
Query:  373 AGPGEEGGKKPRTLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            AG   +G  KPRTLL+AAKELKKAT  +DA T++ ++ ++EE R+L EA+QVQTNALMSAAEVAQG RYT+ L TSWRPP++ R+M+EE   +LR+KW ILV+G+ +  PIKSF+EMK P P+L AL+ KGIKRPTPIQ         VQG+PVAL GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLPVVGGEGPFG+ILCPSRELARQTF+VV+YFC +L RGG+PELR +LCIGGEDKR+Q  PI ++GVHCIVATPGR+SDLL++ K++ D+C+YICLDEGDRMLD+GFDEEV+ IMNHFKQQRQTLLFSATMPQKFQDFAK+VLV+PV+VNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGK+Q +RN+AI  FK G KDVLIATDIAAKGLDFPDIQHVINFDMP EIENYVHRIGRTGRCGKTGVATTFINKA  ES
Sbjct:   21 AGAEADGADKPRTLLDAAKELKKATEALDARTLRMVKQQDEESRVLAEASQVQTNALMSAAEVAQGFRYTDTLKTSWRPPRYLREMSEETRAQLRDKWHILVEGENIVAPIKSFKEMKFPPPVLQALDEKGIKRPTPIQ---------VQGIPVALEGRDMIGIAFTGSGKTVTFSLPLVMLALEEEMKLPVVGGEGPFGIILCPSRELARQTFEVVEYFCSYLQRGGYPELRCILCIGGEDKRTQFMPILQRGVHCIVATPGRLSDLLNSGKINLDVCRYICLDEGDRMLDLGFDEEVRSIMNHFKQQRQTLLFSATMPQKFQDFAKNVLVQPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKDQADRNKAILQFKNGEKDVLIATDIAAKGLDFPDIQHVINFDMPVEIENYVHRIGRTGRCGKTGVATTFINKAVPES 495          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A7S3XUS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS9_HETAK)

HSP 1 Score: 694 bits (1792), Expect = 1.280e-243
Identity = 340/473 (71.88%), Postives = 405/473 (85.62%), Query Frame = 1
Query:  406 RTLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            + L + A E++K  A++D   +K  R ++EE RML+E+++VQTNAL SA E A+GT Y + + T WR P++   + E+   KLR+KW IL +G+ +PPPIKSF+EMK P+P+L AL  KGI+RPTPIQ         VQG+P  L+GRDMIGIAFTGSGKTVTFS+PL+MLALEEEMKLP+VGGEGP+G+ILCPSRELARQT++VV++F + L RGG+P LRT+L +GGED+R+Q+DP++R+GVHCIVATPGR+ DLL++ ++  DLCKYICLDEGDRMLD+GFDEEVQ IMNHF  QRQTLLFSATMP+KFQDFAKDVLVKPV+VNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVC+FCE+K DVDDIHEYLLLKGV+AVSIHG K+Q ERNEAI  FK G KDVL+ATD+AAKGLDFPDIQHV+NFDMPDEIENYVHRIGRTGRCGKTGVATTFINK  +ES
Sbjct:   93 KILFDQAAEMRKFNASLDQRKLKMSRQEQEELRMLQESSRVQTNALQSAKERAEGTTYKDVIRTGWRAPRYITALGEDYHQKLRDKWHILTEGEDMPPPIKSFKEMKFPQPILDALLEKGIRRPTPIQ---------VQGIPCVLAGRDMIGIAFTGSGKTVTFSVPLLMLALEEEMKLPLVGGEGPYGIILCPSRELARQTYEVVEFFAERLGRGGYPRLRTLLVMGGEDRRAQVDPVKREGVHCIVATPGRLKDLLNSKQILLDLCKYICLDEGDRMLDLGFDEEVQTIMNHFTCQRQTLLFSATMPKKFQDFAKDVLVKPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCVFCERKGDVDDIHEYLLLKGVEAVSIHGSKDQAERNEAIDSFKRGDKDVLVATDVAAKGLDFPDIQHVVNFDMPDEIENYVHRIGRTGRCGKTGVATTFINKNVEES 556          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A7S2SHH4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHH4_9STRA)

HSP 1 Score: 684 bits (1765), Expect = 3.190e-239
Identity = 337/473 (71.25%), Postives = 405/473 (85.62%), Query Frame = 1
Query:  409 TLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRG-GFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            TLL+ A  +++   NMD   ++    ++EE  ML+EAN+VQTN+LMSAAE+AQG RY +++ T WRPP H R M+ ++   LR+KW I+ +G+ +PPPIKSF++M+ PEP+++AL A GIKRPTPIQ         VQG+PVALSGRDMIGIAFTGSGKT+TF +PLIMLALEEE +LP+ GGEGPFGVILCPSRELARQT+ V+D +C+ + +G G+P LRTVL +GGE K  Q+  ++RQGVHC+VATPGR+ D L++ K++ DLC+Y+CLDEGDRMLD+GFDEEVQ I++HFK+QRQTLLFSATMPQKFQDFA++VLV+PV+VNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPV IFCEKKQDVDDIHEYLLLKGV+AVSIHGGK+Q+ERNEAI LFK+  KDVL+ATD+AAKGLDFPDIQHVINFDMP EIENYVHRIGRTGRCGKTGVATTFINK  +ES
Sbjct:  110 TLLDEADAVREEQKNMDVKELRLAAQRKEEEWMLREANRVQTNSLMSAAEIAQGKRYDKSIETGWRPPAHIRGMSSQQAAALRKKWYIIAEGEDIPPPIKSFKDMRFPEPVITALAANGIKRPTPIQ---------VQGIPVALSGRDMIGIAFTGSGKTITFCLPLIMLALEEEKRLPLEGGEGPFGVILCPSRELARQTWQVLDRYCEAMGQGQGYPRLRTVLVVGGEAKGPQLQAVERQGVHCVVATPGRLKDFLNSGKMNLDLCRYLCLDEGDRMLDLGFDEEVQAIVSHFKKQRQTLLFSATMPQKFQDFARNVLVRPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVLIFCEKKQDVDDIHEYLLLKGVEAVSIHGGKDQDERNEAIDLFKDCRKDVLVATDVAAKGLDFPDIQHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFINKNVEES 573          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A7R9UA62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA62_9STRA)

HSP 1 Score: 665 bits (1717), Expect = 8.820e-233
Identity = 338/472 (71.61%), Postives = 391/472 (82.84%), Query Frame = 1
Query:  409 TLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            +LL+  + L +    + A  VK    +  E R+L+EA+QV TNAL S  E+A+G RYTEAL TSWRPP++YRD+ E+E  ++R+KW ILV+G+ VPPPIK+FREMKLPE +L+ALE +GIKRPTPIQ         VQG+PVA SGRDMIGIAFTGSGKT+TFS+PLIM ALEEE+KLP+   EGP GVILCPSRELARQT +VV+ +CK L   G P LRT+L +GGE KR QI  +QR GVHCIVATPGR+ DLL+  K++ D+CKY+ LDEGDRMLD+GFDEEVQ I+NHFK QRQTLLFSATMPQKFQDFAK  LVKPV+VNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPV IFCE+K DVDDIHEYLLLKGV AVSIHG K+Q ER +AI+ FK   KDVL+ATD+AAKGLDFPDIQHVINFDMP+EIENYVHRIGRTGRCG+TGVATTFINK+  ES
Sbjct:   86 SLLDTHETLLEKREMLGAAAVKVTEQESAEDRLLREASQVATNALQSRQEIAKGARYTEALKTSWRPPRYYRDLPEDEVVQMRKKWHILVEGEAVPPPIKTFREMKLPEAILAALEGRGIKRPTPIQ---------VQGLPVAFSGRDMIGIAFTGSGKTITFSLPLIMHALEEEVKLPLEPTEGPVGVILCPSRELARQTHEVVETYCKALSDRGHPRLRTLLVVGGESKRDQITAVQRDGVHCIVATPGRLKDLLNARKINLDVCKYLVLDEGDRMLDLGFDEEVQGIINHFKGQRQTLLFSATMPQKFQDFAKKTLVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVVIFCERKGDVDDIHEYLLLKGVAAVSIHGDKDQAERTQAIQRFKNLEKDVLVATDVAAKGLDFPDIQHVINFDMPEEIENYVHRIGRTGRCGRTGVATTFINKSVPES 548          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: W7U850_9STRA (Dead deah box rna helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U850_9STRA)

HSP 1 Score: 659 bits (1701), Expect = 7.980e-230
Identity = 324/473 (68.50%), Postives = 388/473 (82.03%), Query Frame = 1
Query:  406 RTLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            R+LLE  +E+KK   +MD   +K    K++E R+L EANQVQTNAL SA E AQG +Y+++L T W PP H R M++ +C   R+KW I+ +G  +PPPIK+FR+MK P P++ A+  KGI +PTPIQ         VQG+PV LSGRDM+GIAFTGSGKT+TF +PL+MLAL EE K+P+ GGEGP G+ILCPSRELA QTF+V+DY+C+ L RGGFP  R +LCIGG DKR+QID +QRQGVH +VATPGR+ DLLH  K+   LC+Y CLDE DRMLD+GFDEEV +IMNHFKQQRQTLLFSATMP K QDFAK+ LV+PVLVNVGRAGAANLDV+QEVE VK++AKIVYLL+CLQKTAPPV IFCE+K DVD+IHEYLLLKGVDAV+IHGGK+Q ER+EAI+ FK G KDVL+ATD+AAKGLDFP+I+HVINFDMP EIENYVHRIGRTGRCGKTGVATTFIN   ++S
Sbjct:   92 RSLLEVTEEMKKKREHMDPTLLKLEAQKQQEQRILGEANQVQTNALQSAVERAQGVQYSQSLKTGWTPPSHVRAMSKADCAAFRKKWHIICEGVDLPPPIKNFRDMKFPAPIMEAMARKGITKPTPIQ---------VQGLPVLLSGRDMVGIAFTGSGKTMTFGLPLVMLALAEEKKMPLEGGEGPVGIILCPSRELAGQTFEVLDYYCQALGRGGFPRPRALLCIGGMDKRAQIDAVQRQGVHIVVATPGRLRDLLHLKKMSLSLCRYFCLDEADRMLDLGFDEEVAEIMNHFKQQRQTLLFSATMPLKIQDFAKETLVRPVLVNVGRAGAANLDVVQEVELVKKDAKIVYLLQCLQKTAPPVMIFCERKSDVDNIHEYLLLKGVDAVAIHGGKDQAERDEAIREFKGGVKDVLVATDVAAKGLDFPNIEHVINFDMPHEIENYVHRIGRTGRCGKTGVATTFINAEVEQS 555          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A7S1XQX1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQX1_9STRA)

HSP 1 Score: 659 bits (1701), Expect = 8.560e-230
Identity = 330/468 (70.51%), Postives = 391/468 (83.55%), Query Frame = 1
Query:  406 RTLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINK 1809
            ++LL+A   L +  ANMDA  VK  + +  E ++L+EANQV TNALMS AE+A+G R+TE+L TSWR P++YR+ +EEE   LR+KW I+V+G+ VPPPI++FREMK+P  ++ AL   GIKRPTPIQ         VQG+PVA SGRDMIGIAFTGSGKT+TFS+P I+ +LEEEMKLPV   EGP  VILCPSRELARQT++V + +C  L  GG+P+LR++L +GGE KR QI  ++R+GVH +VATPGR+ DLL+  K++ +LCKY+CLDEGDRMLD+GFDEEVQ I+NHF +QRQTLLFSATMPQKFQDFAK+ LV+PVLVNVGRAGAANLDVIQEVEYVK EAKIVYLLECLQKTAPPVCIFCE+K DVDDIHEYLLLKGV AVSIHGGK+Q ER  AI+ FK   KDVL+ATDIAAKGLDFPDIQHVINFDMP+EIENYVHRIGRTGRCG+TGVATTFINK
Sbjct:   95 QSLLDAHDALAEERANMDATAVKVDKQESAEEQLLREANQVSTNALMSKAEIARGARFTESLETSWRAPRYYREKSEEELAALRKKWHIIVEGETVPPPIRTFREMKMPRALVDALAGNGIKRPTPIQ---------VQGLPVAFSGRDMIGIAFTGSGKTITFSLPAILHSLEEEMKLPVEPTEGPVAVILCPSRELARQTYEVCERYCGALASGGWPKLRSLLVVGGESKRDQIMQVEREGVHIVVATPGRLKDLLNARKMNLNLCKYLCLDEGDRMLDLGFDEEVQGIINHFTRQRQTLLFSATMPQKFQDFAKNTLVRPVLVNVGRAGAANLDVIQEVEYVKSEAKIVYLLECLQKTAPPVCIFCERKGDVDDIHEYLLLKGVAAVSIHGGKDQAERTAAIEAFKRLEKDVLVATDIAAKGLDFPDIQHVINFDMPEEIENYVHRIGRTGRCGRTGVATTFINK 553          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A485KPZ7_9STRA (Aste57867_9941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPZ7_9STRA)

HSP 1 Score: 652 bits (1682), Expect = 3.470e-227
Identity = 332/474 (70.04%), Postives = 389/474 (82.07%), Query Frame = 1
Query:  409 TLLEAAKELKKATAN--MDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            +L++ + ++KK   N  +D G + Q  +   E ++L EA+QVQ  +L+SAAE A G RYTE+L T+W PP+H   MTEEECD +R KW ILVDGD +PPPIKSF EM+ P  +L AL+AK I RPTPIQ         VQ +P  LSGRD+IGIAFTGSGKT+TF++PLIM+ALE+E K+P++  EGPFGVIL PSREL RQTF++V  F + L+R GFPE+R +LC+GG+DKR Q++ I ++GVH +VATPGR+ D L + K++ DLC+YICLDEGDRMLD+GFDEEV  I NHFK QRQTLLFSATMPQKFQDFAK VLV+PVLVNVGRAGAANLDV+QEVEYVKQEAKIVYLLECLQKTAPPV IFCE+K DVDDIHEYLLLKGV+AVSIHGGK+Q ERNEAI LFK G KDVL+ATDIAAKGLDFPDIQHVINFDMP EIENYVHRIGRTGRCGKTGVATTFINK   ES
Sbjct:   75 SLIDQSFQMKKKRENEGVDEGDLLQTTS---EVQLLHEASQVQMASLVSAAERAGGIRYTESLRTTWTPPRHIARMTEEECDLVRSKWHILVDGDDIPPPIKSFAEMRFPPAILDALKAKNIVRPTPIQ---------VQAIPCILSGRDIIGIAFTGSGKTMTFTLPLIMMALEQEKKMPLISKEGPFGVILGPSRELMRQTFEIVQQFTQALYRAGFPEIRGLLCMGGQDKREQLEMIFKRGVHIVVATPGRLKDFLQSKKMNLDLCQYICLDEGDRMLDLGFDEEVASIFNHFKHQRQTLLFSATMPQKFQDFAKQVLVRPVLVNVGRAGAANLDVLQEVEYVKQEAKIVYLLECLQKTAPPVLIFCERKGDVDDIHEYLLLKGVEAVSIHGGKDQVERNEAIDLFKRGDKDVLVATDIAAKGLDFPDIQHVINFDMPVEIENYVHRIGRTGRCGKTGVATTFINKNVPES 536          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A8K1CTN8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN8_PYTOL)

HSP 1 Score: 652 bits (1681), Expect = 2.030e-226
Identity = 327/472 (69.28%), Postives = 390/472 (82.63%), Query Frame = 1
Query:  409 TLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            +L++ A E++K          K ++ + +E  MLKEA+ VQ  AL+SA E A+G RYTEA+ T+WRPP+   DM+EEECD +R+KW ILVDG+ +PPPIKSF  M+ P+ +L AL+AK I RPTPIQ         VQ +P  L+GRD+IGIAFTGSGKT+TF++PL+MLALEEE KLP++GGEGPFG+I+ PSREL RQTFDVV +F  +L +GG+PELR +LCIGGEDKR+Q + I R+GVH +VATPGR++  L   +++  LCKYICLDEGDRMLD+GFDEEV    NHF  QRQTLLFSATMPQKFQDFAKDVLVKPV+VNVGRAGAANLDVIQEVEYVKQ+AKIVYLLECLQKTAPPV IFCE+K DVDDIHEYL+LKG++AV+IHGGK+Q+ERNEAI LFK G KDVL+ATD+AAKGLDFPDI+HVINFDMP EIENYVHRIGRTGRCGKTGVATTFINK+  ES
Sbjct:  106 SLIDQAYEMRKKLEEEGVNQDK-IQKETQEINMLKEASHVQKVALVSAQERAEGIRYTEAMKTTWRPPRFIADMSEEECDAIRKKWHILVDGEDIPPPIKSFEHMRFPKAILEALKAKNILRPTPIQ---------VQALPCILAGRDIIGIAFTGSGKTMTFTLPLVMLALEEEKKLPIIGGEGPFGLIVGPSRELMRQTFDVVKHFTTYLFKGGYPELRGLLCIGGEDKRAQSELISRRGVHIVVATPGRLNHFLKLKEMNLRLCKYICLDEGDRMLDLGFDEEVATTFNHFSGQRQTLLFSATMPQKFQDFAKDVLVKPVIVNVGRAGAANLDVIQEVEYVKQDAKIVYLLECLQKTAPPVVIFCERKGDVDDIHEYLILKGIEAVAIHGGKDQQERNEAIDLFKVGRKDVLVATDVAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFINKSVPES 567          
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Match: A0A7S3M683_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M683_9STRA)

HSP 1 Score: 647 bits (1668), Expect = 3.170e-226
Identity = 319/472 (67.58%), Postives = 388/472 (82.20%), Query Frame = 1
Query:  409 TLLEAAKELKKATANMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTSWRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSALEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKARKES 1824
            TLLE A  L+K    +     KQ +    E  +LKEANQVQTNALMS+ E+A G + TE+L TSW  P++  + TEEE +++R+KW ILV+G+  PPPIKSF EMK+P+ +L AL+ K I RPTPIQ         VQG+P  L+G D+IGIAFTGSGKT+TFS+P++M ALEEEM +P+ G EGP G++LCPSRELARQTF+VV+Y+C  L   G+PE+R  +C+GGE   + I+  Q++G+HCIVATPGR++D L+  +++ D+CKY+ LDEGDRMLD+GFDEEV  I++ F++ RQT+LFSATMPQKFQDFAK+ L+KP+LVNVGRAGAANLDVIQEVEYVK+EAKIVYLLECLQKTAPPV IFCE+K DVDDIHEYLLLKGV+AVSIHGGK+QEERNEAI+L+KEGTKDVL+ATDIAAKGLDFPDIQHVINFDMP EIENYVHRIGRTGRCGKTGVATTFINK  +ES
Sbjct:    2 TLLEQANALRKERELLGESANKQQQQHYSEQALLKEANQVQTNALMSSEEIATGVKRTESLPTSWTAPRYLLNKTEEENEEMRKKWHILVEGEGCPPPIKSFAEMKVPQCILDALQKKNISRPTPIQ---------VQGIPALLAGCDIIGIAFTGSGKTLTFSLPMVMFALEEEMNMPLEGKEGPIGLVLCPSRELARQTFEVVEYYCHALKAAGYPEIRAAVCVGGEQNSTLIEVAQKKGIHCIVATPGRLNDHLNKKRLNMDICKYLVLDEGDRMLDLGFDEEVHNIIDKFRRPRQTILFSATMPQKFQDFAKNTLIKPLLVNVGRAGAANLDVIQEVEYVKKEAKIVYLLECLQKTAPPVIIFCERKNDVDDIHEYLLLKGVEAVSIHGGKDQEERNEAIRLYKEGTKDVLVATDIAAKGLDFPDIQHVINFDMPGEIENYVHRIGRTGRCGKTGVATTFINKDVEES 464          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJE9_ECTSI0.000e+087.11DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A836CIR5_9STRA7.450e-26978.31RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3XUS9_HETAK1.280e-24371.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SHH4_9STRA3.190e-23971.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UA62_9STRA8.820e-23371.61Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7U850_9STRA7.980e-23068.50Dead deah box rna helicase n=2 Tax=Monodopsidaceae... [more]
A0A7S1XQX1_9STRA8.560e-23070.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A485KPZ7_9STRA3.470e-22770.04Aste57867_9941 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1CTN8_PYTOL2.030e-22669.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3M683_9STRA3.170e-22667.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:469335..475229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score973.0
Seed ortholog evalue6.4e-281
Seed eggNOG ortholog2880.D8LJE9
Preferred nameDDX41
KEGG koko:K13116
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001817,GO:0001819,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008283,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012501,GO:0012505,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032502,GO:0032991,GO:0033036,GO:0034097,GO:0034641,GO:0035456,GO:0035458,GO:0035770,GO:0036464,GO:0042221,GO:0042623,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071013,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsKOG0341@1,KOG0341@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_010060.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041
Exons12
Model size1830
Cds size1830
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15415.1prot_C-linearis_contig79.15415.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 469335..475229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930496.363515-CDS-C-linearis_contig79:469334..4695321622930496.363515-CDS-C-linearis_contig79:469334..469532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 469335..469532 -
1690881099.636283-CDS-C-linearis_contig79:469334..4695321690881099.636283-CDS-C-linearis_contig79:469334..469532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 469335..469532 -
1622930496.381375-CDS-C-linearis_contig79:469872..4699801622930496.381375-CDS-C-linearis_contig79:469872..469980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 469873..469980 -
1690881099.6493297-CDS-C-linearis_contig79:469872..4699801690881099.6493297-CDS-C-linearis_contig79:469872..469980Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 469873..469980 -
1622930496.3986583-CDS-C-linearis_contig79:470357..4705071622930496.3986583-CDS-C-linearis_contig79:470357..470507Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 470358..470507 -
1690881099.6592798-CDS-C-linearis_contig79:470357..4705071690881099.6592798-CDS-C-linearis_contig79:470357..470507Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 470358..470507 -
1622930496.4187407-CDS-C-linearis_contig79:470787..4708951622930496.4187407-CDS-C-linearis_contig79:470787..470895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 470788..470895 -
1690881099.6690562-CDS-C-linearis_contig79:470787..4708951690881099.6690562-CDS-C-linearis_contig79:470787..470895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 470788..470895 -
1622930496.4335494-CDS-C-linearis_contig79:471132..4711871622930496.4335494-CDS-C-linearis_contig79:471132..471187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471133..471187 -
1690881099.6791642-CDS-C-linearis_contig79:471132..4711871690881099.6791642-CDS-C-linearis_contig79:471132..471187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471133..471187 -
1622930496.4485078-CDS-C-linearis_contig79:471443..4715671622930496.4485078-CDS-C-linearis_contig79:471443..471567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471444..471567 -
1690881099.6898506-CDS-C-linearis_contig79:471443..4715671690881099.6898506-CDS-C-linearis_contig79:471443..471567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471444..471567 -
1622930496.4640207-CDS-C-linearis_contig79:471882..4720391622930496.4640207-CDS-C-linearis_contig79:471882..472039Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471883..472039 -
1690881099.7010727-CDS-C-linearis_contig79:471882..4720391690881099.7010727-CDS-C-linearis_contig79:471882..472039Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 471883..472039 -
1622930496.480294-CDS-C-linearis_contig79:472443..4725571622930496.480294-CDS-C-linearis_contig79:472443..472557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 472444..472557 -
1690881099.71213-CDS-C-linearis_contig79:472443..4725571690881099.71213-CDS-C-linearis_contig79:472443..472557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 472444..472557 -
1622930496.49985-CDS-C-linearis_contig79:472882..4730171622930496.49985-CDS-C-linearis_contig79:472882..473017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 472883..473017 -
1690881099.723386-CDS-C-linearis_contig79:472882..4730171690881099.723386-CDS-C-linearis_contig79:472882..473017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 472883..473017 -
1622930496.523342-CDS-C-linearis_contig79:473574..4737301622930496.523342-CDS-C-linearis_contig79:473574..473730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 473575..473730 -
1690881099.7327325-CDS-C-linearis_contig79:473574..4737301690881099.7327325-CDS-C-linearis_contig79:473574..473730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 473575..473730 -
1622930496.5393157-CDS-C-linearis_contig79:474147..4744001622930496.5393157-CDS-C-linearis_contig79:474147..474400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 474148..474400 -
1690881099.7418537-CDS-C-linearis_contig79:474147..4744001690881099.7418537-CDS-C-linearis_contig79:474147..474400Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 474148..474400 -
1622930496.5544362-CDS-C-linearis_contig79:474957..4752291622930496.5544362-CDS-C-linearis_contig79:474957..475229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 474958..475229 -
1690881099.752714-CDS-C-linearis_contig79:474957..4752291690881099.752714-CDS-C-linearis_contig79:474957..475229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 474958..475229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15415.1

>prot_C-linearis_contig79.15415.1 ID=prot_C-linearis_contig79.15415.1|Name=mRNA_C-linearis_contig79.15415.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=610bp
MSTGTSVKLYGRKKEAALAAAAAAAAAAAAAAAAEAGGDADARREALAGE
DESYDEYVPLRERRRREAERRAGKLGKNRREKEQELLEQEREEDERMASK
RAAAAISSAADDHGDADKGDKAPPAGPGEEGGKKPRTLLEAAKELKKATA
NMDAGTVKQMRAKEEEHRMLKEANQVQTNALMSAAEVAQGTRYTEALTTS
WRPPKHYRDMTEEECDKLREKWSILVDGDKVPPPIKSFREMKLPEPMLSA
LEAKGIKRPTPIQAGATESNSHVQGVPVALSGRDMIGIAFTGSGKTVTFS
IPLIMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHR
GGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTDKVHF
DLCKYICLDEGDRMLDMGFDEEVQKIMNHFKQQRQTLLFSATMPQKFQDF
AKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPV
CIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGTKDV
LIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTF
INKARKESR*
back to top

mRNA from alignment at C-linearis_contig79:469335..475229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15415.1 ID=mRNA_C-linearis_contig79.15415.1|Name=mRNA_C-linearis_contig79.15415.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5895bp|location=Sequence derived from alignment at C-linearis_contig79:469335..475229- (Chordaria linearis ClinC8C monoicous)
ATGTCTACCGGAACATCTGTAAAACTTTACGGGAGGAAAAAGGAGGCAGC CTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG CCGAGGCGGGGGGAGATGCGGATGCCCGTCGGGAGGCACTAGCCGGGGAG GATGAGTCCTACGATGAGTACGTGCCGCTGAGGGAGAGGAGACGAAGAGA GGCCGAGAGGAGGGCAGGCAAGCTCGGCAAGAACAGAAGGGAGAAGGAGC AAGAGCTGCTGGAGCAAGAGAGGTGGGGCTATTGATTTTTTTCATTTGCA AAGGGCATGGCACGACACAGCAGATGATGTAGACATAGTTTAGCAGGGTT TCCGCACCGCCGTGCATATACCGACACAGCAGAAGCGGGCAAAGACCAAC AGGAGGGGCGAACAGCTGCGAAGTTTGGAAAGCCGGGCGCCCTTGTGTCT GTGGTGATTCTTTCAGTTTGTTTAGAACTGTGTGGAAATTTTGACGGACC ACGCGGTTAACAAGCCCTCCCGCTCCCTAGACTAGACTAGACATGTAGCA ATGTGCAAGGCGAACCGTTTCCTCGCTGGATCGCTGACGCCTACGCGTCG TAGACACACCCGATCAGCTTTACTCGTCTCGTCACCAACCCCTTCAAAGT GAAGCCCGTGGGTACAACTACAACTCCGGAGTAGTGGTGGCTCCCTACAA ATACTTGACACACACCTCAAGGTGAAGTCGCTGCACCTAACCAGCTCTTC ACGTAACCACACCGCATAACACACGGATCGGCTTTTACATACATACGTGT ATTACTCTTGCTGCCGGCCTCCAAACCAGGGAGGAAGATGAGAGGATGGC GAGCAAGCGAGCGGCGGCAGCAATATCTTCGGCGGCCGATGATCATGGCG ACGCCGATAAGGGGGACAAGGCGCCACCCGCAGGCCCAGGGGAGGAAGGG GGCAAAAAGCCCCGAACTCTGCTGGAGGCAGCCAAGGAGCTCAAGAAGGC CACGGCGAACATGGACGCGGGGACGGTCAAGCAGATGAGGGCGAAGGAGG AGGAACACCGCATGCTGAAAGAAGCCAACCAGGTGGGAAAGGCAGGCGGG GGCGTCCTCATTCGTGTTGTTGCCCTTGGTGGTTTGGATGCTGTCGCCGT TGCGTTGCTTTCAATGAAGAGAAGAGCGCGGTTCCTTCGCGTCACGAATG AGATAGATGAGGGCCGCAGCCAACATGCGGTCGTTTGTTGTTGCTGCTGT TGTTGTTGTTATTTTGAGCTTATTCTCCTGCAGCTGTATTGTAGAAGGGT TGCGTGCGTGTGTGTTTGTGTGTGCAGCAGTAGCGGTGGTTACTTTGGAT GGCGAATACAGCCTCGCTCTTTGTTCTGGCTCGTAGCACACACATCCACC AAAAACTTGATGGACGTACAGCAGTAACCCCCAATTTGGCCATTCCGCCT GCTCACGTTTACGTTGCACTAATAACCGTCCTATGCGTATATACCTCAGG TGCAAACGAACGCTTTGATGAGCGCTGCCGAGGTGGCTCAGGGCACCCGC TACACGGAGGCGTTGACTACGTCGTGGCGACCCCCGAAGCACTACAGGGA CATGACGGAGGAGGAGTGCGACAAGCTCAGGGAGAAGTGGAGCATCCTCG TCGATGTACGTTGGTGCTGTGCTCCTCTTGGTGTTTAATGATTCCAATTT CGTGATTCTCGTTTTTGTCTGAATCATTTCGCCCAGCCTTTTCGTGGCGC GACCTCGGGCTAGAGGGAGGGCGGGAGGGAGGGAGGGAGCATCCTCTGGT AGGTGCAGGAGGTTGGAGTGGCTTTTCGGGCTGTGTTTGCGTTATTGTGG TATTTTCGCGCAACCGCTCTTTTGCTTTTGGTTCTCTTGTCGCGGCCAAG AGCCGGCCAAGAGGAAAAGAACGGAGCTGCTGGAAGGCACGCTCAGGCGC GCAGAAGGAAAATAAGCATGGCATTGCATGTGTCAGCATCCTTGCAGGCG GTTGCAGGCAGCCAGACGCCGGCGATGAGGGTATGTAGACTCTAGCTGTC GATAAATTCGACAGGCCAGCACCTATTGGAGTTCTTTGAGCAGGTTACTC GTGCGCAATCAAAAACCCCACAACGCGTTTAACTCCCAGAGCATTACTCA CAACTTCCAATTAGGGCATCGGTTCCCTCACACGTTACACCCCACCCACA CGCCACCCACAGGGAGACAAGGTTCCGCCGCCCATCAAGTCTTTCCGGGA GATGAAGCTGCCGGAGCCGATGCTGTCCGCGCTGGAGGCAAAGGGCATCA AGCGGCCAACACCTATTCAGGCAGGAGCAACAGAGAGCAACAGCCATGTG GCTGGTAGTTTTGACTGGGGAGTTTGAGGTCGCCTACGTTGAAAGTATTT GTGTTAGGTTTTGGGCCGGTAGTGTAGTGATGATCCTGCTGTATTTTGGT TCTAACGGCCGTCGGGATCAGCTCAAAAACGTGCTCTGCTGGCTGAGCGT CGGTGCTGCTTTTCCTGTCCATTGTCGTATGTGTGCGTCGTTTTTTTGGG TTGATTTAGCTTGAACATGCCATTGCGATCCTGAATATGCTACTCGAGCA GAAGAATATCTACTTCGAAGTATTTTAACATTCTTGCGCTCCATCTCGGG TGCTGCATCTGGTTTTGTACAGGTTCAGGGAGTTCCAGTGGCGTTGTCCG GGCGGGACATGATCGGGATTGCCTTCACGGGTTCGGGTAAGACTGTGACC TTCAGCATCCCACTCATCATGCTGGCGCTCGAGGAGGTGAGTCATGATTT CCTTCCCGCCCACCCCGATGCCATTGCGAAACCATCACTCTCGCGTTTCC GCACGCACACGCCGGGCATGTGAGTGTGGGTAGCTCCTACCCCCCGCACC CGCCGTGATGCGTGCTTATATAATTTCAAGATAGCGCTCCAACACAGGCT GGTGGGGACGTTCTGCCTGATCCCGCGCCCCTCAGCAAGGGAAGCAAAAG TATCAGCAACCCCTCCCACGGTTGCCCTAGTTTAACGCAGTGCTCCTTGG CCTACTTAAGTGTTCAATGCTGTTGTGGCGCCTGGTTGGTTGGTTTACTC TCTCTTCTTTTTTTTCGGGGATGAAACTGCTGTGGGTGGTCTTAATTTTT GGTTCAACTTGGTTGATTGCTCTCTTGTGTGTGTTTGTAGGAGATGAAAC TGCCGGTGGTTGGTGGAGAGGGGCCGTTCGGCGTGATCCTGTGCCCCTCG AGAGAGCTGGCCAGACAAACGTTCGACGTGGTGGACTACTTCTGCAAGCA CCTGCACAGGGGGGGGTTTCCGGAGCTACGTACGGTGCTTTGCATCGGTA AGACACATGTCTCGCAGGCATGATGACATCATAGCTAGTCTTGGAGTGCG TACTCTGGTGGTAGAGCAGACCCTCCCTCAACATTGCGCTGCCACCCAAA GAGTCGTTCGAAGCAGACCAAACCCGAACCCGAACCGTAACCCGAACCCA AAAGTCGTTCAAAGCAAACCAAACCCCAATTTTTACTGAGAAACTCGATC GAGTCAACGTCGGATTGCACAGCAGAAAGTCTTGAGAGCGTTGAACCGAA AGGGTTTCTCCTTGTTGCGTCTCTCGTGTGGCTCGTGTGGCTCGTGTGTC TTGTCATGTCAGGCGGGGAGGACAAGCGAAGCCAGATCGACCCCATCCAG AGGCAAGGCGTCCACTGCATCGTGGCAACACCCGGTCGGATTAGCGACCT CCTTCACACCGACAAGGTCCACTTCGACCTCTGCAAGTGAGTCAGAGAGC GACAATATTGCTGAACCACCCCTGTCCCAATCCCTTAACACAGTTAATTG ATAGGAAAAGTTTGAAAATGCAAACAAGAAGAACTGCCGTTGGTTCATTG GCTTTCGGTACTTTCTCTCGTTGGTGGCGTTTTTTTTTTCAGGGGTGCAA ACGAGGCGATGCGTTGATTCTTCTTGTGTTTCCTTGGCCGTGCGTGGTGT TGCAACACGTGTTTGGTATTGTTTGGTACTTTTTTTGCGCAGGTACATCT GCCTGGACGAAGGGGACCGAATGCTGGACATGGGCTTCGACGAGGAGGTA CGTGCGCCTTTTCAGCCGTTGCGTTGCGCCTCTCTTTGGGGAAGGTTTTC GATGGACCATTGTGTAAGCTAGGGTTGCCGTTTGCCTAAGCCGCCGCTAG CGATGACGCAGCACATATCCAAATATATTGTGGTTCAAACGATGCTCCGA TCCCCCCCCGCCCGAACTCTGCTGTTTCTCATTTTGTTCGAAATCATTGC CAACGCCAACACAAATCATATTCTACAAAACCAGGTGCAGAAGATCATGA ACCACTTCAAGCAGCAGCGGCAGACGCTCCTCTTCTCGGCCACCATGCCG CAGAAGTTTCAGGACTTCGCCAAGGACGTGCTCGTCAAGCCGGTACGTTA GTTCGATCGTCCTCGATGCCCCTGACCTCGATCTTTCCAAAACCTAAGAC AAATATCGATTTATTGCGATGATATCCACCCTATTCTCGGCTGAAATCTA CCCCAGCTAGAACCAAGGAATTCCGGCACCCCAAGTACTTGGGAGAGCAT TTTCGCTTTAAATTGCACCCGGTATTGTCCACCTAACCTGAAGTGTTTTG TGACGTGACCCGCGCTGCGGACGGGCAAACGGGTCATCGCATGGCCGATG GGGATCCATGACACGGGGACAGGTGCTAGTTAACGTGGGCCGTGCGGGTG CGGCGAACCTAGATGTGATCCAGGAGGTGGAGTACGTGAAGCAGGAGGCG AAGATCGTGTACCTGCTGGAGTGCCTGCAGAAGACCGCGCCCCCGGTGTG CATCTTCTGCGAGAAGAAGCAGGTGTGGCGTCACGTACAGCAGGCACACA GCAGGCACACACACAAAGAGAGAAAGAGAAAGAAAGAAAGCCCTCAAGAA GCCTGATTACAGCACATTGCGAAGCATAGAACAGCACCACCTGGATTACG AGGCGAGACGGCTTGAGCGCGAAGCGCTTCACTAAGGGTAATTTGTGAAA TGATGATGATCCAGATCCCCCTCTGTCTCTATTAGATGTGAGTGGCATGT CTTTCCTGTCACAGCCCACCACACCACAGCCAGGAACTCCTCAAGTCACA ATTCCCCGCCACATAATATTTTGGAAGGTCGGTCACCTCGTCTTGCATGC CGCCATCAATGCACCCACCCACCTTGCGATCGCTTGCATCCACTAACAGG ACGTGGATGACATCCACGAGTACCTCCTGCTCAAGGGCGTGGACGCGGTC AGCATCCACGGAGGCAAGGAGCAAGAGGAGCGAAACGAAGCCATCAAGCT CTTCAAGGTAGCTACGAAGGATCTACCTATCTACTTCGTATCTATCTATC TACTACGGTTTTCATATGTATCTACGTTTATCATGTGTAGGGATTGCGGT TGGTGTGGGGAAGTTTATTGTTCTTGTGCGTGCTTGCTGCTGCGGAACGC ACATCCGCTGTGGACTTGCTGCTGCACATTCCGTTTCACTGCGGTTTTCC CGGTAGAGCTTCCTTTCCTTTTTAACTTTTCTCGCGCTTGCTGATACACA GAAGTAACCGCCATCATCATCATCATCATGACGGTTTCTTTCATCATGAC GGTTTCGATTTCCCGTTCCCGTTCGCGTGGACGTGTCCGACTCGCAGGAG GGGACGAAGGACGTGCTGATCGCCACCGACATCGCCGCCAAGGGACTCGA TTTTCCGGACATCCAGCACGTTATCAACTTCGACATGCCCGACGAGATCG AGAACTACGTGCACAGGATCGGCCGGACGGGCCGCTGCGGTAAAACCGGG GTAGCGACAACCTTCATCAACAAGGCAAGGAAGGAATCTCGGTAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig79:469335..475229-

>mRNA_C-linearis_contig79.15415.1 ID=mRNA_C-linearis_contig79.15415.1|Name=mRNA_C-linearis_contig79.15415.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3660bp|location=Sequence derived from alignment at C-linearis_contig79:469335..475229- (Chordaria linearis ClinC8C monoicous)
ATGTCTACCGGAACATCTGTAAAACTTTACGGGAGGAAAAAGGAGGCAGC
CTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCGAGGCGGGGGGAGATGCGGATGCCCGTCGGGAGGCACTAGCCGGGGAG
GATGAGTCCTACGATGAGTACGTGCCGCTGAGGGAGAGGAGACGAAGAGA
GGCCGAGAGGAGGGCAGGCAAGCTCGGCAAGAACAGAAGGGAGAAGGAGC
AAGAGCTGCTGGAGCAAGAGAGATGTCTACCGGAACATCTGTAAAACTTT
ACGGGAGGAAAAAGGAGGCAGCCTTAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCGAGGCGGGGGGAGATGCGGATGCCCG
TCGGGAGGCACTAGCCGGGGAGGATGAGTCCTACGATGAGTACGTGCCGC
TGAGGGAGAGGAGACGAAGAGAGGCCGAGAGGAGGGCAGGCAAGCTCGGC
AAGAACAGAAGGGAGAAGGAGCAAGAGCTGCTGGAGCAAGAGAGGGAGGA
AGATGAGAGGATGGCGAGCAAGCGAGCGGCGGCAGCAATATCTTCGGCGG
CCGATGATCATGGCGACGCCGATAAGGGGGACAAGGCGCCACCCGCAGGC
CCAGGGGAGGAAGGGGGCAAAAAGCCCCGAACTCTGCTGGAGGCAGCCAA
GGAGCTCAAGAAGGCCACGGCGAACATGGACGCGGGGACGGTCAAGCAGA
TGAGGGCGAAGGAGGAGGAACACCGCATGCTGAAAGAAGCCAACCAGGGA
GGAAGATGAGAGGATGGCGAGCAAGCGAGCGGCGGCAGCAATATCTTCGG
CGGCCGATGATCATGGCGACGCCGATAAGGGGGACAAGGCGCCACCCGCA
GGCCCAGGGGAGGAAGGGGGCAAAAAGCCCCGAACTCTGCTGGAGGCAGC
CAAGGAGCTCAAGAAGGCCACGGCGAACATGGACGCGGGGACGGTCAAGC
AGATGAGGGCGAAGGAGGAGGAACACCGCATGCTGAAAGAAGCCAACCAG
GTGCAAACGAACGCTTTGATGAGCGCTGCCGAGGTGGCTCAGGGCACCCG
CTACACGGAGGCGTTGACTACGTCGTGGCGACCCCCGAAGCACTACAGGG
ACATGACGGAGGAGGAGTGCGACAAGCTCAGGGAGAAGTGGAGCATCCTC
GTCGATGTGCAAACGAACGCTTTGATGAGCGCTGCCGAGGTGGCTCAGGG
CACCCGCTACACGGAGGCGTTGACTACGTCGTGGCGACCCCCGAAGCACT
ACAGGGACATGACGGAGGAGGAGTGCGACAAGCTCAGGGAGAAGTGGAGC
ATCCTCGTCGATGGAGACAAGGTTCCGCCGCCCATCAAGTCTTTCCGGGA
GATGAAGCTGCCGGAGCCGATGCTGTCCGCGCTGGAGGCAAAGGGCATCA
AGCGGCCAACACCTATTCAGGCAGGAGCAACAGAGAGCAACAGCCATGGA
GACAAGGTTCCGCCGCCCATCAAGTCTTTCCGGGAGATGAAGCTGCCGGA
GCCGATGCTGTCCGCGCTGGAGGCAAAGGGCATCAAGCGGCCAACACCTA
TTCAGGCAGGAGCAACAGAGAGCAACAGCCATGTTCAGGGAGTTCCAGTG
GCGTTGTCCGGGCGGGACATGATCGGGATTGCCTTCACGGGTTCGGGTAA
GACTGTGACCTTCAGCATCCCACTCATCATGCTGGCGCTCGAGGAGGTTC
AGGGAGTTCCAGTGGCGTTGTCCGGGCGGGACATGATCGGGATTGCCTTC
ACGGGTTCGGGTAAGACTGTGACCTTCAGCATCCCACTCATCATGCTGGC
GCTCGAGGAGGAGATGAAACTGCCGGTGGTTGGTGGAGAGGGGCCGTTCG
GCGTGATCCTGTGCCCCTCGAGAGAGCTGGCCAGACAAACGTTCGACGTG
GTGGACTACTTCTGCAAGCACCTGCACAGGGGGGGGTTTCCGGAGCTACG
TACGGTGCTTTGCATCGGAGATGAAACTGCCGGTGGTTGGTGGAGAGGGG
CCGTTCGGCGTGATCCTGTGCCCCTCGAGAGAGCTGGCCAGACAAACGTT
CGACGTGGTGGACTACTTCTGCAAGCACCTGCACAGGGGGGGGTTTCCGG
AGCTACGTACGGTGCTTTGCATCGGCGGGGAGGACAAGCGAAGCCAGATC
GACCCCATCCAGAGGCAAGGCGTCCACTGCATCGTGGCAACACCCGGTCG
GATTAGCGACCTCCTTCACACCGACAAGGTCCACTTCGACCTCTGCAAGC
GGGGAGGACAAGCGAAGCCAGATCGACCCCATCCAGAGGCAAGGCGTCCA
CTGCATCGTGGCAACACCCGGTCGGATTAGCGACCTCCTTCACACCGACA
AGGTCCACTTCGACCTCTGCAAGTACATCTGCCTGGACGAAGGGGACCGA
ATGCTGGACATGGGCTTCGACGAGGAGGTACATCTGCCTGGACGAAGGGG
ACCGAATGCTGGACATGGGCTTCGACGAGGAGGTGCAGAAGATCATGAAC
CACTTCAAGCAGCAGCGGCAGACGCTCCTCTTCTCGGCCACCATGCCGCA
GAAGTTTCAGGACTTCGCCAAGGACGTGCTCGTCAAGCCGGTGCAGAAGA
TCATGAACCACTTCAAGCAGCAGCGGCAGACGCTCCTCTTCTCGGCCACC
ATGCCGCAGAAGTTTCAGGACTTCGCCAAGGACGTGCTCGTCAAGCCGGT
GCTAGTTAACGTGGGCCGTGCGGGTGCGGCGAACCTAGATGTGATCCAGG
AGGTGGAGTACGTGAAGCAGGAGGCGAAGATCGTGTACCTGCTGGAGTGC
CTGCAGAAGACCGCGCCCCCGGTGTGCATCTTCTGCGAGAAGAAGCAGGT
GCTAGTTAACGTGGGCCGTGCGGGTGCGGCGAACCTAGATGTGATCCAGG
AGGTGGAGTACGTGAAGCAGGAGGCGAAGATCGTGTACCTGCTGGAGTGC
CTGCAGAAGACCGCGCCCCCGGTGTGCATCTTCTGCGAGAAGAAGCAGGA
CGTGGATGACATCCACGAGTACCTCCTGCTCAAGGGCGTGGACGCGGTCA
GCATCCACGGAGGCAAGGAGCAAGAGGAGCGAAACGAAGCCATCAAGCTC
TTCAAGGACGTGGATGACATCCACGAGTACCTCCTGCTCAAGGGCGTGGA
CGCGGTCAGCATCCACGGAGGCAAGGAGCAAGAGGAGCGAAACGAAGCCA
TCAAGCTCTTCAAGGAGGGGACGAAGGACGTGCTGATCGCCACCGACATC
GCCGCCAAGGGACTCGATTTTCCGGACATCCAGCACGTTATCAACTTCGA
CATGCCCGACGAGATCGAGAACTACGTGCACAGGATCGGCCGGACGGGCC
GCTGCGGTAAAACCGGGGTAGCGACAACCTTCATCAACAAGGCAAGGAAG
GAATCTCGGTAGGAGGGGACGAAGGACGTGCTGATCGCCACCGACATCGC
CGCCAAGGGACTCGATTTTCCGGACATCCAGCACGTTATCAACTTCGACA
TGCCCGACGAGATCGAGAACTACGTGCACAGGATCGGCCGGACGGGCCGC
TGCGGTAAAACCGGGGTAGCGACAACCTTCATCAACAAGGCAAGGAAGGA
ATCTCGGTAG
back to top