mRNA_C-linearis_contig79.15407.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15407.1
Unique NamemRNA_C-linearis_contig79.15407.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.930e-18
Identity = 68/135 (50.37%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:  322 HELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLEVKTSNKGCTPLQMXXXXXXXXXXXXXXXXXANPNSRGVAGAT 726
            +ELH AA +GST+RT A+LS GL++I+Q DP+G+TPLM AS +G TR+VRIL+ +GAN+    D  FTA                  AGADLE  TS  G  PL +      XXXXXXXXXXX N NSR    AT
Sbjct:   15 NELHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQRGYTRIVRILVKEGANVLIVADLGFTAXXXXXXXXXXXXXXXXXNAGADLEAATSTNGSRPLHLAADKGHXXXXXXXXXXXXNLNSRRFDRAT 149
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.190e-13
Identity = 57/136 (41.91%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:  349 GSTERTIAVLSRGLVDID-QRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLEVKTSNKGCTPLQMXXXXXXXXXXXXXXXXXANPNSRGVAGATPLYNAAENG 753
            GS ERT+A+LSRG VDID      G TPLM AS  G  RV R+LL  GA ++ AD+   TALH++    H A +K L KAGA++E +  + G   L                   AN +S   +GATPLY +A  G
Sbjct:    7 GSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVD-GMVVL---------------IHAGANVDSEQESGATPLYTSARQG 126
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: A0A6H5JKV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-12
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  319 MHELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGAN 495
            ++ELH AA  G TER  +VL+RG+++I+Q DP G TPLMCA+ KG  RVV ILL KGAN
Sbjct:   13 LNELHQAAMRGFTERINSVLTRGVININQGDPTGRTPLMCAAQKGCMRVVGILLNKGAN 71
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: D7FN71_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN71_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-11
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  319 MHELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADD 513
            ++ELH AA  GS ER  ++L+RG+++I+Q DP G TPLMCA+ KG  RVV ILL KGANM+ A D
Sbjct:   13 LNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACD 77
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: D7G1Y7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-11
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  322 HELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLEVKTSNKGCTP 630
            +ELH AA  GS +RT A+LS G VD++Q DP GFTPLM AS++G + +V+ILL  GAN +       TAL V                  D+  +TS+ GCTP
Sbjct:   11 NELHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLASMEGQSHIVKILLDNGANSS-------TALGVXXXXXXXXXXXXXXXXXXDIAGQTSD-GCTP 105
[Close]
BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.360e-10
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  322 HELHVAARSGSTERTIAVL-SRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEG-HPAAT 567
            ++LH AA  GS ER +A+L SR  + ID     G+TPLM A+ +G++RVVRILL KGAN++   +   TALH + Q+G HP  T
Sbjct:   17 NDLHRAANDGSVERVVALLASRSSIAIDAGAEYGWTPLMLAAWRGSSRVVRILLNKGANVSVVAEDGHTALHFSTQDGGHPVVT 100
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.830e-8
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  316 SMHELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDA 516
            S  +LH AA  G  +RT+A+LSR L ++DQRD +GFTPL+ A+ +G+  VVR+LL  GA ++ A  A
Sbjct:    2 SWTDLHQAAARGMVQRTLALLSRPLANVDQRDNDGFTPLIAAAQEGHHNVVRVLLEHGAQISMASYA 68
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: UPI00201EC388 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EC388)

HSP 1 Score: 62.8 bits (151), Expect = 6.360e-8
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  328 LHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATK-LLAKAGADLEVKTSNKGCTPLQM 639
            LHVA   G  E    +LS+ +VD++ R   G+TP M A+ +G+T V  +L+ KG ++++ DDA    LHV +  GH    K +L+K   D+  +   +G T + M
Sbjct:  100 LHVACYGGHVEMVEHLLSKDIVDVNTRGRYGWTPAMRAAFQGHTEVFDLLVSKGGDISRVDDAGENILHVASSGGHVEMVKHVLSKDAVDINGR-GRRGRTAVMM 203
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BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: UPI00191AFEFD (ankyrin repeat domain-containing protein n=1 Tax=Ramlibacter monticola TaxID=1926872 RepID=UPI00191AFEFD)

HSP 1 Score: 59.7 bits (143), Expect = 3.960e-7
Identity = 42/137 (30.66%), Postives = 63/137 (45.99%), Query Frame = 1 
Query:  322 HELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLEVKTSNKGCTPLQMXXXXXXXXXXXXXXXXXANPNSRGVAGATPL 732
            H L +A R GS +   A+++     ++ R P   +PLM ASLKG T +VR L+ + A++ K     +  LH  A  GH    ++L    A ++ ++ NK  TPL M                 A+P  R   G T L
Sbjct:   59 HGLFLAVRDGSLKAAAALIAWPQTKVEWRSPKDESPLMMASLKGQTDIVRKLVARDADVNKTG---WAPLHYAATNGHLEIMQILLDEHAYIDAESPNKS-TPLMMAAKYGTPSAVKLLLEAGADPTLRNELGLTAL 191
[Close]
BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Match: AKR1_YEAST (Palmitoyltransferase AKR1 n=12 Tax=Saccharomyces TaxID=4930 RepID=AKR1_YEAST)

HSP 1 Score: 60.5 bits (145), Expect = 7.710e-7
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:  307 NNRSMHELHVAARSGSTERTIAVL----SRGLVDIDQRDPNGFTPLMCASLKGNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLEVKT-SNKGC 624
            +++  + LH++  S +    + VL    S+GL+DID RDP G T L+ A+ +G++  V  LL  GA++  AD   FT LH    +G P   K L + GAD   KT + K C
Sbjct:  173 DDQGFNLLHLSVNSSNIMLVLYVLFNVVSKGLLDIDCRDPKGRTSLLWAAYQGDSLTVAELLKFGASIKIADTEGFTPLHWGTVKGQPHVLKYLIQDGADFFQKTDTGKDC 283
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G1I8_ECTSI1.930e-1850.37EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K1W5_9PHAE6.190e-1341.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKV7_9PHAE1.670e-1261.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN71_ECTSI1.050e-1158.46EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1Y7_ECTSI1.180e-1143.69EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JL33_9PHAE1.360e-1048.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH6_ECTSI1.830e-849.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
UPI00201EC3886.360e-835.24ankyrin repeat domain-containing protein 50-like n... [more]
UPI00191AFEFD3.960e-730.66ankyrin repeat domain-containing protein n=1 Tax=R... [more]
AKR1_YEAST7.710e-736.94Palmitoyltransferase AKR1 n=12 Tax=Saccharomyces T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:354997..356401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930494.3108137-CDS-C-linearis_contig79:354996..3553091622930494.3108137-CDS-C-linearis_contig79:354996..355309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 354997..355309 +
1690881098.5053587-CDS-C-linearis_contig79:354996..3553091690881098.5053587-CDS-C-linearis_contig79:354996..355309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 354997..355309 +
1622930494.3348048-CDS-C-linearis_contig79:355961..3564011622930494.3348048-CDS-C-linearis_contig79:355961..356401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 355962..356401 +
1690881098.5258856-CDS-C-linearis_contig79:355961..3564011690881098.5258856-CDS-C-linearis_contig79:355961..356401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 355962..356401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15407.1prot_C-linearis_contig79.15407.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 354997..356401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15407.1

>prot_C-linearis_contig79.15407.1 ID=prot_C-linearis_contig79.15407.1|Name=mRNA_C-linearis_contig79.15407.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp
EIDEGTSNGRTALILAASFGHSRVVGILLKKRADVAKADDAGYTALHLSA
FNGHLAVTKLLVKAGADLEARISNIGGTPLHLAAEGGHQEVMGVLIEAGA
NPNNRSMHELHVAARSGSTERTIAVLSRGLVDIDQRDPNGFTPLMCASLK
GNTRVVRILLGKGANMAKADDACFTALHVTAQEGHPAATKLLAKAGADLE
VKTSNKGCTPLQMAAYQGHSDVLRVLIEAGANPNSRGVAGATPLYNAAEN
G
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mRNA from alignment at C-linearis_contig79:354997..356401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15407.1 ID=mRNA_C-linearis_contig79.15407.1|Name=mRNA_C-linearis_contig79.15407.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1405bp|location=Sequence derived from alignment at C-linearis_contig79:354997..356401+ (Chordaria linearis ClinC8C monoicous)
GAGATCGATGAAGGCACCTCGAATGGGCGCACCGCCCTCATCTTGGCCGC
GAGCTTCGGTCACTCGCGAGTGGTCGGGATTCTTCTGAAGAAAAGAGCCG
ACGTGGCAAAAGCCGATGATGCCGGCTACACTGCTCTGCATCTTTCAGCA
TTTAATGGACACCTGGCCGTGACGAAGCTGCTGGTGAAGGCCGGCGCCGA
CCTGGAAGCAAGGATCTCAAATATAGGCGGCACGCCACTTCACCTGGCTG
CGGAGGGAGGGCACCAGGAGGTTATGGGAGTGCTGATCGAGGCAGGGGCG
AATCCCAACAACCGTCTGTTGGACGGAGCGACACCGCGCGGCTCAGGACG
GACACTTGGCTGCGATCAAGGTGCTCCTTCGTGCGAAGGTGGATCCGCTC
TTGACCTTTTCGAATTCGTCGGGGGATATCTATGTCCCTCTAGACGCGGC
GGCGGCAAATGGCCACTCGGAGGTGGCAGGCGAAGGTGCAGAGCAGTAGC
CCTAAGATCATTCACGATGGCCATGTTGGCTCCCTTGCCGAGAAGGATCC
TGACAACGCGCGAGTGACCCTTGACATAGGCGAACATGAGAGCGGTGGCG
CCTTCCGATGTTCTTTCATCGACGCCAATTCCCCTCGAGAGCACGGCTAT
GGTACGCTCCGGAGAGCCACTACCTGCGGCAACGTGCAGATCGTTCATTA
GATCTCGAAGTCACTTTAGCTGCGGGGAGAAGGACCAGGGACCAGAGGTT
GTGTTTGTGGCCGCTGGGGACGCAGGGCGGGACTGTCAGGATGCGTGGTG
GGGCCATTTTTTTTAATTCGGAGCATATTTCCACGTAGCCCCTTCGATTC
ACCTGCCGCGTGGTATTCATCGTCCGACACAGCACACAACAGCAGTTCCC
GCCGTCCCTAGCACACGAAACGCCTCCGGTACTTCTCCTCAACTGTCACC
AGCAGTGTCTTTGAGGTTCAATGCATGAACTTCATGTCGCCGCGAGAAGT
GGCTCAACGGAGCGTACCATAGCCGTGCTCTCGAGGGGGCTGGTAGACAT
CGATCAACGCGATCCGAATGGCTTCACCCCCCTCATGTGCGCCTCTCTCA
AGGGTAATACGCGCGTTGTCAGGATCCTTCTGGGCAAGGGAGCCAACATG
GCGAAAGCCGATGACGCCTGTTTCACTGCTCTGCACGTGACGGCTCAGGA
AGGACACCCGGCCGCGACGAAGCTGCTGGCGAAGGCTGGCGCCGACCTGG
AAGTGAAGACCTCAAACAAGGGTTGCACACCGCTGCAAATGGCCGCGTAC
CAAGGGCACTCGGATGTGCTAAGAGTGTTGATCGAGGCAGGGGCGAACCC
CAACAGCCGTGGGGTGGCCGGAGCGACACCGCTGTACAACGCGGCTGAGA
ACGGA
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Coding sequence (CDS) from alignment at C-linearis_contig79:354997..356401+

>mRNA_C-linearis_contig79.15407.1 ID=mRNA_C-linearis_contig79.15407.1|Name=mRNA_C-linearis_contig79.15407.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig79:354997..356401+ (Chordaria linearis ClinC8C monoicous)
GAGATCGATGAAGGCACCTCGAATGGGCGCACCGCCCTCATCTTGGCCGC
GAGCTTCGGTCACTCGCGAGTGGTCGGGATTCTTCTGAAGAAAAGAGCCG
ACGTGGCAAAAGCCGATGATGCCGGCTACACTGCTCTGCATCTTTCAGCA
TTTAATGGACACCTGGCCGTGACGAAGCTGCTGGTGAAGGCCGGCGCCGA
CCTGGAAGCAAGGATCTCAAATATAGGCGGCACGCCACTTCACCTGGCTG
CGGAGGGAGGGCACCAGGAGGTTATGGGAGTGCTGATCGAGGCAGGGGCG
AATCCCAACAACCGAGATCGATGAAGGCACCTCGAATGGGCGCACCGCCC
TCATCTTGGCCGCGAGCTTCGGTCACTCGCGAGTGGTCGGGATTCTTCTG
AAGAAAAGAGCCGACGTGGCAAAAGCCGATGATGCCGGCTACACTGCTCT
GCATCTTTCAGCATTTAATGGACACCTGGCCGTGACGAAGCTGCTGGTGA
AGGCCGGCGCCGACCTGGAAGCAAGGATCTCAAATATAGGCGGCACGCCA
CTTCACCTGGCTGCGGAGGGAGGGCACCAGGAGGTTATGGGAGTGCTGAT
CGAGGCAGGGGCGAATCCCAACAACCGTTCAATGCATGAACTTCATGTCG
CCGCGAGAAGTGGCTCAACGGAGCGTACCATAGCCGTGCTCTCGAGGGGG
CTGGTAGACATCGATCAACGCGATCCGAATGGCTTCACCCCCCTCATGTG
CGCCTCTCTCAAGGGTAATACGCGCGTTGTCAGGATCCTTCTGGGCAAGG
GAGCCAACATGGCGAAAGCCGATGACGCCTGTTTCACTGCTCTGCACGTG
ACGGCTCAGGAAGGACACCCGGCCGCGACGAAGCTGCTGGCGAAGGCTGG
CGCCGACCTGGAAGTGAAGACCTCAAACAAGGGTTGCACACCGCTGCAAA
TGGCCGCGTACCAAGGGCACTCGGATGTGCTAAGAGTGTTGATCGAGGCA
GGGGCGAACCCCAACAGCCGTGGGGTGGCCGGAGCGACACCGCTGTACAA
CGCGGCTGAGAACGGAGTTCAATGCATGAACTTCATGTCGCCGCGAGAAG
TGGCTCAACGGAGCGTACCATAGCCGTGCTCTCGAGGGGGCTGGTAGACA
TCGATCAACGCGATCCGAATGGCTTCACCCCCCTCATGTGCGCCTCTCTC
AAGGGTAATACGCGCGTTGTCAGGATCCTTCTGGGCAAGGGAGCCAACAT
GGCGAAAGCCGATGACGCCTGTTTCACTGCTCTGCACGTGACGGCTCAGG
AAGGACACCCGGCCGCGACGAAGCTGCTGGCGAAGGCTGGCGCCGACCTG
GAAGTGAAGACCTCAAACAAGGGTTGCACACCGCTGCAAATGGCCGCGTA
CCAAGGGCACTCGGATGTGCTAAGAGTGTTGATCGAGGCAGGGGCGAACC
CCAACAGCCGTGGGGTGGCCGGAGCGACACCGCTGTACAACGCGGCTGAG
AACGGA
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