mRNA_C-linearis_contig79.15392.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: D8LMH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH7_ECTSI) HSP 1 Score: 355 bits (911), Expect = 4.640e-106 Identity = 230/397 (57.93%), Postives = 260/397 (65.49%), Query Frame = 1
Query: 1 MPPKAKDKKGKQELLPTGVDYTRRPLPATEPCDARPTPRRELPVVSAHHSFEEWDEDSLAEMEWGTAGAETFFEDKDGRCFLPAKMAARVVRWVRPRDLIAQKKDLDGEEELQQ------GGKGATGGAEKGKASXXXXXXXXXPPKXXXKAPASEPSVLADAAADEEGNPLPRVVIPAPTEAVPGDIGDDRGNGKPDAADTPGQAPDK--VSHGTIPTRGFKTAWSTEQRQQIASLL--RSKGAQXXXXXXXXXXXXGSSSDVNETPVGGRETXXXXAVEGNGNLGDXXXXXXXEGGSGAAPDFLSDDDIAMLGAPSGDDIDPAMTAIFKVVGQLSPTLSRTGCPLLWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPV 1161
MPPKAKDKKGKQE+LP G+DYTRRPL + EPCDARP PRRELPVVSAHH+FEEWD+D+L EMEWG AE F EDKDGR FLPA+++ARV RWVRP +L+ + DG+EE QQ GG G G EKGKA XXX XXX P+ EP VL D A D +GNPLPR+ +P V D D G A T Q + V + T+P RGFKT WS QR+ IASLL ++ XXXXXXXXXXXX XXXX G GD S P +L D+DIA LGAPSG DIDPAMTAIFK + QLS T+S TGCPLLWE IYPKT++EVPCYNPCG Y IKLFAAGRWR+VEVDD IPLDAT PV
Sbjct: 1 MPPKAKDKKGKQEVLPVGIDYTRRPLASAEPCDARPPPRRELPVVSAHHAFEEWDDDALLEMEWGMVRAEPF-EDKDGRSFLPARISARVARWVRPTELLTNETGEDGKEEHQQHSSGAVGGNGTASGVEKGKAGGGADKGXXXXXXXXXXXPSVEPVVLEDVAVDLQGNPLPRIFVPR-AAIVANDSATDEG------AQTLSQVAKQSSVPNATLP-RGFKTGWSESQRRDIASLLCKYNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTSGDW---------SKEPPAYLRDEDIATLGAPSGGDIDPAMTAIFKAIDQLSSTVSSTGCPLLWETIYPKTANEVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPV 379
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: D8LMH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH9_ECTSI) HSP 1 Score: 196 bits (499), Expect = 5.210e-53 Identity = 130/263 (49.43%), Postives = 146/263 (55.51%), Query Frame = 1
Query: 4978 EVGMAHDTTRVDRENAEVESWEIAEPGRAGRAALLWNQRQASKVARLGNGDTSVLPPSSPSAETNASAVXXXXXXXXXXXXGAEGYEDWIKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKPAVLIGQEELKQRAKEREALRQATAEFEKKWEEDRIKTVEAGKEHMAMQVKFIRGREEQIKEARLPFLHDRDAIVQDMIAKAEARKEALEEERAALEPTSKGAKGKQA-KGKPGKK 5763
EV MAHD +RVD EN EVESWE A PGRA RAALLW QRQASKVA LGNGD S+ SSP +S P P+ LI EE+K+RA ER ALRQ T EFEKKWE DR+ VEAG + MAMQ+++IRGREE IK+ARLPFL DR+ IVQD+IAK ARKEA+EEERAALEPT+KG K KQA KGKPGKK
Sbjct: 44 EVEMAHDMSRVDSENKEVESWEAATPGRADRAALLWTQRQASKVASLGNGDRSLTSSSSPENVATSSPTTSSNVSVNPK------------------------------------------------------------------PVPSALISDEEMKKRADERVALRQTTMEFEKKWEADRVDMVEAGMQEMAMQLEYIRGREESIKQARLPFLRDRETIVQDLIAKMRARKEAVEEERAALEPTTKGGKTKQATKGKPGKK 240
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: D8LMH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH8_ECTSI) HSP 1 Score: 107 bits (267), Expect = 6.720e-22 Identity = 94/287 (32.75%), Postives = 121/287 (42.16%), Query Frame = 1
Query: 2722 VRARDPGSPPAIFLLVTPSPRLAREVSAK-NGFREFMSSNAPSDIPGEIPELDGALSEPPPTGIENTENXXXXXXXXXX------HNPPEVTVGGTGGNATLDDENPTGIEEGGDEQDNVSSGVPDAQEEXXXXX--------AEILMCLWVDKPGIGGGVGGTSSQPSSSRSNTHATVVLQEVLPGV-SGQYARGEFSKPVPGGRVVMCARYDPHRSGLPFTATSAKVRLTKGGAPRVFRVLLQPGVGCCVGFCCTHAIETGDAGQVWAEAGYNQVTETGKYEGAR 3534
++ARDPGSPP IFL++TPSPR A +++ + R+ +AP E A P G TEN PP + + + + G+ E E + GV + E X AE+LM LW D+PG + N A V LQEVLPGV G + E KPVPGGR++M ++D +GLPFTA SAKV W EAGYNQVTETGKY+GAR
Sbjct: 1 MQARDPGSPPPIFLVITPSPRSAPKITTTASSMRQSADRDAPDG------EKTIAQEREPEPGDSKTENEMDSHRRNEETGELLGEGPPXXXAAAGAVASAVSEMSRGGVVESPPEM-SAGCGVQRSSGERLEEXXXXXXXXXAEVLMNLWADQPGA-------DITTKKADWNASAMVALQEVLPGVPEGLHTSAESFKPVPGGRLIMRVKHDLEPNGLPFTAKSAKV---------------------------------------WEEAGYNQVTETGKYDGAR 234
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A2D4C107_PYTIN (Calpain catalytic domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C107_PYTIN) HSP 1 Score: 107 bits (268), Expect = 1.470e-19 Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 919 PSGDDIDPAMTAIFKVVGQLSPTLSRTG-CPLLWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKLYRLGG 1242
P G+ + P M + F+++ QL P R G P LWEAIYP+ + VP Y+PCG Y++KLF G+WR+V+VDDC P+D + +S ELWP +L+KA+ K++ G
Sbjct: 316 PHGEVVHPDMASYFRIIDQLYPHWGRAGETPYLWEAIYPQDTHGVPVYSPCGKYSVKLFVMGKWRRVDVDDCFPVDEEGEIQLVSSSMRAELWPSILAKAILKVFHWVG 424
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A482RSF0_9ARCH (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSF0_9ARCH) HSP 1 Score: 98.2 bits (243), Expect = 2.800e-17 Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 928 DDIDPAMTAIFKVVGQLSPTLSRTG-----------CPLLWEAIYPKT-SDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKLYRLGGYDLALAQEVSAITGDAAARDEGPAHASTPG 1332
D +DP + F ++ + P + + C LW A+YP+ +++ P YNP G YA+KLF AG+WRKV VDD +P+++ +A S D LELWP+LLSKA+Y +Y Y GD A D P S+PG
Sbjct: 152 DFVDPLICETFNIIAEFMPKIIKNTAEKPANVQEMHCNYLWRAVYPQIKTNQKPVYNPAGKYAVKLFLAGKWRKVYVDDSLPVNSKGQLAVAHSVDTLELWPILLSKAIYTMYTACLYTF----------GDKAPSDLLPIFRSSPG 288
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A0P1AB99_PLAHL (Cytosolic Ca2-dependent cysteine protease (Calpain), large subunit (EF-Hand protein superfamily) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB99_PLAHL) HSP 1 Score: 100 bits (248), Expect = 3.600e-17 Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 919 PSGDDIDPAMTAIFKVVGQLSPTLSRTG-------CPLLWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALY 1221
P GD I AM + F++V QL + +R P LW+AIYP+ SD P YNP G Y++KLF GRWR+V++DD +PLD+ + + +S ELWP LL KALY
Sbjct: 352 PRGDIIHSAMASYFRIVEQLYHSSNRRNHDGITFSVPFLWQAIYPQDSDGQPVYNPGGKYSVKLFVLGRWRRVDIDDKLPLDSNGNYIYLSSSLKYELWPCLLVKALY 459
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A397ER62_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ER62_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 4.930e-17 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 868 GAAPDF-LSDDDIAMLGAPSGDDIDPAMTAIFKVVGQLSPTLSRTGCPLLWEAIYPKT----SDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKLY 1230
G+AP + + + P GD +D + + +V+ +L + P WEAIYP+T + +P NP G Y +KLF G+WRK+EVDD +PLD V+ +S P E+WP LL+KA+YK++
Sbjct: 86 GSAPVIEIEPNSVVKPSVPEGDYVDSPLASGCRVISRLVDRMVANQ-PYFWEAIYPQTVTATNRRIPTVNPGGKYLVKLFVMGKWRKIEVDDRMPLDDQGKVVVLSSSQPSEIWPTLLAKAIYKVF 210
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: W2R2I1_PHYPN (Calpain catalytic domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R2I1_PHYPN) HSP 1 Score: 99.0 bits (245), Expect = 8.050e-17 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 919 PSGDDIDPAMTAIFKVVGQL---SPTLSRTGCPLLWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKL 1227
P GD I M + F++V QL S T + P LW+AIYP+ + P YNP G Y++KLF GRWR++++DD +PLDA + AS E+WP LL KALYK+
Sbjct: 350 PHGDVIHADMASYFRIVEQLYDSSKTSNNCMAPFLWQAIYPQDNTGQPVYNPGGKYSVKLFVFGRWRRIDIDDKLPLDADGKVIYLASSMKNEIWPSLLVKALYKV 455
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A7S2WPI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPI0_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.080e-16 Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1
Query: 943 AMTAIFKVVGQLSPTLSRT-GCPLLWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKLYRL 1236
A T+ V G+ + +T P LW AIYP+ P YNP G Y IKL+ +G WR +++DD +PLDA+ V A++ PLELWP+LLSKA+Y + L
Sbjct: 76 AQTSRVPVTGRQGTSPEKTRDSPFLWGAIYPQDDQGRPVYNPMGRYVIKLWCSGAWRGLDLDDWMPLDASGECVFASTVHPLELWPMLLSKAVYWVMHL 174
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Match: A0A7S3HP67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HP67_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.350e-16 Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 1
Query: 919 PSGDDIDPAMTAIFKVVGQLSPTLSRTGCPL-------------------------LWEAIYPKTSDEVPCYNPCGLYAIKLFAAGRWRKVEVDDCIPLDATRSPVIAASEDPLELWPLLLSKALYKLYRLGGY 1245
P G +IDP + +++V + +PT+ + L LW AI+P+ + P NP G Y ++L+ G+WR+V VDD +P+ A +P +A+S + LELWP+LL+KA+Y +Y GY
Sbjct: 212 PKGGEIDPFLCGAYRLVQRFTPTIVKARLNLAVVKEAVAGAEEGIEEERHIIQDTFLWRAIHPQLPNGKPVVNPAGKYCVRLYLCGKWRRVYVDDAVPVTAEGAPALASSSETLELWPMLLAKAIYAVYSACGY 345 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig79.15392.1 >prot_C-linearis_contig79.15392.1 ID=prot_C-linearis_contig79.15392.1|Name=mRNA_C-linearis_contig79.15392.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1922bp MPPKAKDKKGKQELLPTGVDYTRRPLPATEPCDARPTPRRELPVVSAHHSback to top mRNA from alignment at C-linearis_contig79:150828..170367+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig79.15392.1 ID=mRNA_C-linearis_contig79.15392.1|Name=mRNA_C-linearis_contig79.15392.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=19540bp|location=Sequence derived from alignment at C-linearis_contig79:150828..170367+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig79:150828..170367+ >mRNA_C-linearis_contig79.15392.1 ID=mRNA_C-linearis_contig79.15392.1|Name=mRNA_C-linearis_contig79.15392.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=11532bp|location=Sequence derived from alignment at C-linearis_contig79:150828..170367+ (Chordaria linearis ClinC8C monoicous)back to top |